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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064279 ID=TCONS_00064279|Name=TCONS_00064279|organism=Clytia hemisphaerica|type=transcript|length=1451bp
TTCGTAAATAAATATGTATAACTGAAGCTAAATGAGACTACTTAGTAACA
AATTTTACTAATACTGAAGACTGGAAGTactaaaataagaaaagaaacaa
GCAATGAAGAAATGGCCGAATCAGCAGTTAGCAGAGTCCACAGAATCTAA
ACAAAACTTTCTATCAGCATCAAAAAATGACTATTCGGTGTACGAATTCA
AACTCAATGAGAAGGGCTTGGACTGGCATGAGGAGAGCGAAGAAGAAAGG
CCATTATTCTACAGCTCGACGTCTGGTTTTGACACTACAGGAAAAATCTA
TTCTGTTTTGTTTCGGCCGACACCGAGTTATTGTCATCCAGACCCAAGGA
ACATTCTGTACTTACTGTATTACCAAGATAGATCACTCGTCAGTAAACAA
TTCAACCTTGAAGCAAAACAAGGACGGCTTGAATATGACCCAAACTTGAT
GCGCtggttttattttcaagaaaccAAGGATAAAAAACAGGTGGTAATTT
ATAGTGGCTGTGTACAAAGTTTGATTGGTTCTCCAATCGAGTCAATCGAT
ATGATGGCAGATGAATATAAGTGCACAAGTCTCACTTTTGGCAGCTTGGT
AATGTCAACACATTGGCTCTTAAATCCTATCAATGAGAAGGGCTTTCTCC
TTGTAAAAACGTGCGAAGAACAACAACACGATGAAAAATTGCAGCTCTAC
TTTTTCCAATATGGTGAAAAAGAGATCGCTCATTACAAGAAGATTGAAAT
CGAACAAAGCGAATACTCTAAAGTATTTGTCAAGCACTACTATTTAAAGC
GTGTGTACACAGTTGAGGAagacataaataaaatctacgTTCTGTCACAA
GAGGGCTTAAGAATGATCGACAAATACCATCTCACGTGTTTTGATGATTC
AGGTAAATTGTTATTCACGTTTGAATTAGGTGTTCTTCGGGAAAATTACG
ATTTTTTTGACCAACTAGTAATGTAATGATCTCAATGGACATTAAAATCC
AAGTAGCCAAAGCTACTGAAGATGGATTAATTGTGATGAGAGAATTCAAG
ATGAAAAAATCCACCAGAGATAATGGAAATATAATGATGGGCTATCCAAG
ATATCATTTGATGAAACTCTCAGGGAGAGCTTTTATTGTATTTCAGATGC
GACTTTCCAATAAACTCTATCTTTACGACGTATATTCAGAAACAGGGGAG
CCGATAGGGATTTGCGGTATAACAGGTTGGGACTATTGGGACAATATAAA
ATTTGATATCAATCATCAACTAACAGATGTGGCATTATTAGAATATCATC
AATTCATGATAGGTGATAAAGTACAAGTTGAGTTTTCGACCTTCGAAAGA
CTTAGTACAAAGAAAAATGATTCTCCTGGCTTACAATGGCTGGAGCCTGA
TCGGGTTATTCATTGAAAGCTCTATAACAATGCTGTTTTCAATTTCCTTA
C Run BLAST on NCBI protein sequence of TCONS_00064279-protein >TCONS_00064279-protein ID=TCONS_00064279-protein|Name=TCONS_00064279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MKKWPNQQLAESTESKQNFLSASKNDYSVYEFKLNEKGLDWHEESEEERP
LFYSSTSGFDTTGKIYSVLFRPTPSYCHPDPRNILYLLYYQDRSLVSKQF
NLEAKQGRLEYDPNLMRWFYFQETKDKKQVVIYSGCVQSLIGSPIESIDM
MADEYKCTSLTFGSLVMSTHWLLNPINEKGFLLVKTCEEQQHDEKLQLYF
FQYGEKEIAHYKKIEIEQSEYSKVFVKHYYLKRVYTVEEDINKIYVLSQE
GLRMIDKYHLTCFDDSGKLLFTFELGVLRENYDFFDQLVM Run BLAST on NCBI transcript from alignment at scaffold_41:650705..652155 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064279 ID=TCONS_00064279|Name=TCONS_00064279|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at scaffold_41:650705..652155 (Clytia hemisphaerica)
GTAAGGAAATTGAAAACAGCATTGTTATAGAGCTTTCAATGAATAACCCG
ATCAGGCTCCAGCCATTGTAAGCCAGGAGAATCATTTTTCTTTGTACTAA
GTCTTTCGAAGGTCGAAAACTCAACTTGTACTTTATCACCTATCATGAAT
TGATGATATTCTAATAATGCCACATCTGTTAGTTGATGATTGATATCAAA
TTTTATATTGTCCCAATAGTCCCAACCTGTTATACCGCAAATCCCTATCG
GCTCCCCTGTTTCTGAATATACGTCGTAAAGATAGAGTTTATTGGAAAGT
CGCATCTGAAATACAATAAAAGCTCTCCCTGAGAGTTTCATCAAATGATA
TCTTGGATAGCCCATCATTATATTTCCATTATCTCTGGTGGATTTTTTCA
TCTTGAATTCTCTCATCACAATTAATCCATCTTCAGTAGCTTTGGCTACT
TGGATTTTAATGTCCATTGAGATCATTACATTACTAGTTGGTCAAAAAAA
TCGTAATTTTCCCGAAGAACACCTAATTCAAACGTGAATAACAATTTACC
TGAATCATCAAAACACGTGAGATGGTATTTGTCGATCATTCTTAAGCCCT
CTTGTGACAGAAcgtagattttatttatgtctTCCTCAACTGTGTACACA
CGCTTTAAATAGTAGTGCTTGACAAATACTTTAGAGTATTCGCTTTGTTC
GATTTCAATCTTCTTGTAATGAGCGATCTCTTTTTCACCATATTGGAAAA
AGTAGAGCTGCAATTTTTCATCGTGTTGTTGTTCTTCGCACGTTTTTACA
AGGAGAAAGCCCTTCTCATTGATAGGATTTAAGAGCCAATGTGTTGACAT
TACCAAGCTGCCAAAAGTGAGACTTGTGCACTTATATTCATCTGCCATCA
TATCGATTGACTCGATTGGAGAACCAATCAAACTTTGTACACAGCCACTA
TAAATTACCACCTGTTTTTTATCCTTggtttcttgaaaataaaaccaGCG
CATCAAGTTTGGGTCATATTCAAGCCGTCCTTGTTTTGCTTCAAGGTTGA
ATTGTTTACTGACGAGTGATCTATCTTGGTAATACAGTAAGTACAGAATG
TTCCTTGGGTCTGGATGACAATAACTCGGTGTCGGCCGAAACAAAACAGA
ATAGATTTTTCCTGTAGTGTCAAAACCAGACGTCGAGCTGTAGAATAATG
GCCTTTCTTCTTCGCTCTCCTCATGCCAGTCCAAGCCCTTCTCATTGAGT
TTGAATTCGTACACCGAATAGTCATTTTTTGATGCTGATAGAAAGTTTTG
TTTAGATTCTGTGGACTCTGCTAACTGCTGATTCGGCCATTTCTTCATTG
CttgtttcttttcttattttagtACTTCCAGTCTTCAGTATTAGTAAAAT
TTGTTACTAAGTAGTCTCATTTAGCTTCAGTTATACATATTTATTTACGA
A Coding sequence (CDS) from alignment at scaffold_41:650705..652155 >TCONS_00064279 ID=TCONS_00064279|Name=TCONS_00064279|organism=Clytia hemisphaerica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_41:650705..652155 (Clytia hemisphaerica)
TTACATTACTAGTTGGTCAAAAAAATCGTAATTTTCCCGAAGAACACCTA
ATTCAAACGTGAATAACAATTTACCTGAATCATCAAAACACGTGAGATGG
TATTTGTCGATCATTCTTAAGCCCTCTTGTGACAGAAcgtagattttatt
tatgtctTCCTCAACTGTGTACACACGCTTTAAATAGTAGTGCTTGACAA
ATACTTTAGAGTATTCGCTTTGTTCGATTTCAATCTTCTTGTAATGAGCG
ATCTCTTTTTCACCATATTGGAAAAAGTAGAGCTGCAATTTTTCATCGTG
TTGTTGTTCTTCGCACGTTTTTACAAGGAGAAAGCCCTTCTCATTGATAG
GATTTAAGAGCCAATGTGTTGACATTACCAAGCTGCCAAAAGTGAGACTT
GTGCACTTATATTCATCTGCCATCATATCGATTGACTCGATTGGAGAACC
AATCAAACTTTGTACACAGCCACTATAAATTACCACCTGTTTTTTATCCT
TggtttcttgaaaataaaaccaGCGCATCAAGTTTGGGTCATATTCAAGC
CGTCCTTGTTTTGCTTCAAGGTTGAATTGTTTACTGACGAGTGATCTATC
TTGGTAATACAGTAAGTACAGAATGTTCCTTGGGTCTGGATGACAATAAC
TCGGTGTCGGCCGAAACAAAACAGAATAGATTTTTCCTGTAGTGTCAAAA
CCAGACGTCGAGCTGTAGAATAATGGCCTTTCTTCTTCGCTCTCCTCATG
CCAGTCCAAGCCCTTCTCATTGAGTTTGAATTCGTACACCGAATAGTCAT
TTTTTGATGCTGATAGAAAGTTTTGTTTAGATTCTGTGGACTCTGCTAAC
TGCTGATTCGGCCATTTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064279-exon-scaffold_41-1491911889:650705..652155 | TCONS_00064279-exon-scaffold_41-1491911889:650705..652155 | Clytia hemisphaerica | exon |
| TCONS_00064279-exon-scaffold_41-1510915933:650705..652155 | TCONS_00064279-exon-scaffold_41-1510915933:650705..652155 | Clytia hemisphaerica | exon |
| TCONS_00064279-exon-scaffold_41-1575043694:650705..652155 | TCONS_00064279-exon-scaffold_41-1575043694:650705..652155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:650705..652155 . |
Blast
The following BLAST results are available for this feature:
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