TCONS_00064288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064288
Unique NameTCONS_00064288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064288 ID=TCONS_00064288|Name=TCONS_00064288|organism=Clytia hemisphaerica|type=transcript|length=616bp
AATAGCGGTTTCTCTTAATAATTTGTTGTTGTCGTTATATATACTTTCAT
TTCATATTTGAAACATTGGCAAATTGTCAGTCACTAACTATGTATTGCTC
ACTATCCAACTATTAAAAAAAGCAAGGGAAGTGAAATTATAAGTTCGGTA
CATGATTTTGTTTTCCGTCAGTGTTACGCTTGTTTCTTATCTTATATTAA
TGGCCGTTCAGTATAACAGGTGCACCCGGGGGGgtgcactcatatggtcc
gacctgtggcatgtgccacccttaagggtaggtttttcgagacccttAAA
ATGCACTATAAGGCTGTACTTTTGATACAGTGCACTTTAGGGGTCTCGTT
TTAGCTGGatgtactgtaagggtgtgttttggGGACAATGACAATGATAC
ATTACTATTGGATGACAATATCTTGCTGAATTCCAactctgacagtaaaa
atctgatgtatcttGATAATTTTGACTCGTACCCATTTGGATTTGTCTTG
CACATTTTGTCGACATCTCAGGGTCATTTTTagatggcttcagcaaaata
agatatgcaATAAAAACTACACTGTAAAAGGGTGAGAAACGTTCGATAAA
ATGAACTgcaagggta
Run BLAST on NCBI

transcript from alignment at scaffold_41:813416..814031

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064288 ID=TCONS_00064288|Name=TCONS_00064288|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at scaffold_41:813416..814031 (Clytia hemisphaerica)
tacccttgcAGTTCATTTTATCGAACGTTTCTCACCCTTTTACAGTGTAG
TTTTTATtgcatatcttattttgctgaagccatctAAAAATGACCCTGAG
ATGTCGACAAAATGTGCAAGACAAATCCAAATGGGTACGAGTCAAAATTA
TCaagatacatcagatttttactgtcagagtTGGAATTCAGCAAGATATT
GTCATCCAATAGTAATGTATCATTGTCATTGTCCccaaaacacaccctta
cagtacatCCAGCTAAAACGAGACCCCTAAAGTGCACTGTATCAAAAGTA
CAGCCTTATAGTGCATTTTaagggtctcgaaaaacctacccttaagggtg
gcacatgccacaggtcggaccatatgagtgcacCCCCCCGGGTGCACCTG
TTATACTGAACGGCCATTAATATAAGATAAGAAACAAGCGTAACACTGAC
GGAAAACAAAATCATGTACCGAACTTATAATTTCACTTCCCTTGCTTTTT
TTAATAGTTGGATAGTGAGCAATACATAGTTAGTGACTGACAATTTGCCA
ATGTTTCAAATATGAAATGAAAGTATATATAACGACAACAACAAATTATT
AAGAGAAACCGCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040308XLOC_040308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064288-exon-scaffold_41-1491911889:813416..814031TCONS_00064288-exon-scaffold_41-1491911889:813416..814031Clytia hemisphaericaexon
TCONS_00064288-exon-scaffold_41-1510915933:813416..814031TCONS_00064288-exon-scaffold_41-1510915933:813416..814031Clytia hemisphaericaexon
TCONS_00064288-exon-scaffold_41-1575043694:813416..814031TCONS_00064288-exon-scaffold_41-1575043694:813416..814031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:813416..814031 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0871689	0.170007	0.0986971	0.193119	1.41063	1.85783	1.34483	1.46885	1.83639	1.72874	2.47279	2.78659	0.115947	0.240823	0.0494974	0.106237	0	0.0670712	0.0926625	0.387858	0.16856	0	0	0	0	0	0.119526	0.127561	0.0967507	0.197147
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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