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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064335 ID=TCONS_00064335|Name=TCONS_00064335|organism=Clytia hemisphaerica|type=transcript|length=805bp
GCTTAAAGAACACTTTAAAACTGATTGAACTTCCAGCCTAAAGggtgaaa
aatgaagatgatgaaacttcttgttttattgttttgcaTGGTGGTTGTTG
TTCACTTCGATTGTGTTGAATCATGCAACACGCAATTGGTGACGGAAGGG
ACAACTGACCAAGGTGGTTTTGGTTATAGCGGCCAGCTGAACTCGGGCAT
AACACAATGCAAATTGATAAGCGAAGGTTATCCAGTAAAATATTCGAGTG
TCGGGGTATGTAGTACAGCACTTAGTTGTAATTTACAAGGCCGTAATAAC
GATAATACATGTAACAATTACTGTATATTCACCATTAATGCATGCTATGG
TTTATGTTCACCTGAAGATGAATGCTCCGGATCACCAGCAGGACAATACA
AATGCGTATGTTTTAAAGCTGACGAAAGCAATGGAATACCATCAACACAA
CCACCAAGTggtaaatgaaaacaaaaaatacatttaatttATATCATCGT
ATATATCTTCAACAATATCACTTAGCGGTAAATGAACCAGTGAAACCAAT
CTGAAGCtaaaaacatttcatccaaccagcttttatttttttgcaaatta
tttttatgagGACCCAATTTATAAGAACGTTCAGTCTGAACTttggaaca
aaataagaacaccGTGCACCTTGATTTTTACAAGTTTCTTATAATAACAT
TTTGATATATTATATTATGACTTAAGAACATTTCATtcatctatattata
atacgcttaaattAGAACTCTCCCATTGGGCTCTTACAGAAAGCTTTTGT
ACAGG Run BLAST on NCBI protein sequence of TCONS_00064335-protein >TCONS_00064335-protein ID=TCONS_00064335-protein|Name=TCONS_00064335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MKMMKLLVLLFCMVVVVHFDCVESCNTQLVTEGTTDQGGFGYSGQLNSGI
TQCKLISEGYPVKYSSVGVCSTALSCNLQGRNNDNTCNNYCIFTINACYG
LCSPEDECSGSPAGQYKCVCFKADESNGIPSTQPPSGK Run BLAST on NCBI transcript from alignment at scaffold_411:175754..178894+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064335 ID=TCONS_00064335|Name=TCONS_00064335|organism=Clytia hemisphaerica|type=transcript|length=3141bp|location=Sequence derived from alignment at scaffold_411:175754..178894+ (Clytia hemisphaerica)
GCTTAAAGAACACTTTAAAACTGATTGAACTTCCAGCCTAAAGGTGAGCT
CTTTGGTTTATTTTTTACATTCCTCAATATatggcagattttttttctaa
atatttgcCGTACGATAGCTAAACTTTGCCATTGCCACTTTACCACGGGG
ACAGACAAACACTCTAGGTAGGTACAAAAGTAGCTTCAAACTTTTAGGCA
GTCAGATTAAAGGCCtgtttgtttcaaaaaaaaatttgtcggTCTGGTGG
AAAGATCTTGAAAGTATGTTAGGGATGTTGCCTCGAGAATGACAGAGTTT
AGCCATCTAATCATCTAAGGGTATAATCGGGGCAATAGCGTCGAGTATTG
ATCTCTGTCAAAAATGGTGTGTAAAGGAccgatattttttatttgtttca
taCAGTATCTAAGGTAAGACTCGACTTTAATTGAAAAGAATGATTAGAAA
ACATATTGGTTAGTTGTCCTTTGCAAGATATGAAgaaagtactttaggcg
tactcttaggttccaaataaacggcgaAATTTTAATAGACGAGATGGGGG
ACCTAATCgccgggggaggggggttggaaattgtacttctgaaaacccaa
aattaaggtaaatataggctaaaatcaggctttttggagcaaaataaggg
gacttcattttgccaactgaaaatattcttaaaaaataataaacggggga
ggggTGGTCCTAATAagtcgaaataccgttttcccgtcaaaatttttgct
gaatcccggaatcccgaaaattgaaaaaaataataacaccgtcacaccgg
tttgtacaggttcaaataccggcataatgacaagaAATAAAGCCAAATAc
tgtcaccgtctgattttaaaataccgttttcccgtcttttttttcgtcaa
atcccgtaataccgtactaaaaaagggccaatcccgtcacaccgtaaaag
aaCAACCCCCCTTACAcgcttatttttataagaatacactttataagaat
gtccatgatgaaaatggccaaaaaattaagaatgcgctaagaatatcacc
atcatggaattttgctactcaagctaagaatgccatttttagcattttca
attataaattaccaattaccCCCttagtaaggctcactcctttatTCATT
ATAATGCCAGtctttatgcttgagacgtatgtactaaatgtcaaatctag
tctgaattaagTTCCTAACTtgagaatgctgtaagaatattttNttatgc
ttgagacgtatgtactaaatatcaaatctagtctgaattaagTTCCTAAC
Ctgagaatgctgtaagaatattccaggataattttcccaaaaaagttaag
gatatccatgatgaaatggatttacaccattcttatataaaaaagtgtgt
aacaGAAAATTTTGCTCACCATTTTTAATGAGTTGTCATTTTAGGTAGGT
CATCATAATTTCGATTTTACAGTTTTTTATAATACTAAAATTCAAGTTAA
GCCTTcctctaaaaaataaaaaaagaatcaacTATAAACCTTTGACCGTA
AGCTTACAACTTTGACTTTATTTGGCCCACCCGGtatatttataagaata
tttatgatgaaattggccaaaagttaagaatatgctaaggatatCAACAT
CATGAAATTTGGCAACAAAACCTAAGAATTTCATTTATAGAatattttta
actgtaAATTACCTATTATCCCCCGGTTCACAAAAATACTATTTCGTGCT
TCCGGTGTGTATTTCACTGTTAAATCTGGCTTGAAAACTTAGAATATAAC
TGTTAGaatatatttcaatattttaggaatatgaaaaaaaagtcttataa
aatacacgtttttttaaatagaagaacatacaaagtttttgaagcttttt
tatgttcttaagtttttaagttttaagcttgaaaatgttcttaacatgtt
cttactttcaccatttacacgctttttcatttataagaatacactttata
agaatgtccatgatgaaaatggccaaaaaattaagaataatgctaagaat
atcaccatcatgggattttgctactcaagctaagaatgccatttttagag
cattttcaattataaattgtcaattaccctcAAGTAAGGTTCACTCCTTT
Cggaaaatgtcattttttgcttaagacgtatgtactaaatgttaaatcta
gtctgaattaggattctaacctaagaatgctatcGCAGAagattttagga
tgattttcccaaaaaagttaagaatatccatgatgaaatggatttacacc
attcttataaaaaagaagcgtgtaGTCAGTAttccattttcctaaggaaA
TAGGTGTTTTATGTTCCACATGTTTTTAgggtgaaaaatgaagatgatga
aacttcttgttttattgttttgcaTGGTGGTTGTTGTTCACTTCGATTGT
GTTGAATCATGCAACACGCAATTGGTGACGGAAGGGACAACTGACCAAGG
TGGTTTTGGTTATAGCGGCCAGCTGAACTCGGGCATAACACAATGCAAAT
TGATAAGCGAAGGTTATCCAGTAAAATATTCGAGTGTCGGGGTATGTAGT
ACAGCACTTAGTTGTAATTTACAAGGCCGTAATAACGATAATACATGTAA
CAATTACTGTATATTCACCATTAATGCATGCTATGGTTTATGTTCACCTG
AAGATGAATGCTCCGGATCACCAGCAGGACAATACAAATGCGTATGTTTT
AAAGCTGACGAAAGCAATGGAATACCATCAACACAACCACCAAGTggtaa
atgaaaacaaaaaatacatttaatttATATCATCGTATATATCTTCAACA
ATATCACTTAGCGGTAAATGAACCAGTGAAACCAATCTGAAGCtaaaaac
atttcatccaaccagcttttatttttttgcaaattatttttatgagGACC
CAATTTATAAGAACGTTCAGTCTGAACTttggaacaaaataagaacaccG
TGCACCTTGATTTTTACAAGTTTCTTATAATAACATTTTGATATATTATA
TTATGACTTAAGAACATTTCATtcatctatattataatacgcttaaattA
GAACTCTCCCATTGGGCTCTTACAGAAAGCTTTTGTACAGG Coding sequence (CDS) from alignment at scaffold_411:175754..178894+ >TCONS_00064335 ID=TCONS_00064335|Name=TCONS_00064335|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_411:175754..178894+ (Clytia hemisphaerica)
atgaagatgatgaaacttcttgttttattgttttgcaTGGTGGTTGTTGT
TCACTTCGATTGTGTTGAATCATGCAACACGCAATTGGTGACGGAAGGGA
CAACTGACCAAGGTGGTTTTGGTTATAGCGGCCAGCTGAACTCGGGCATA
ACACAATGCAAATTGATAAGCGAAGGTTATCCAGTAAAATATTCGAGTGT
CGGGGTATGTAGTACAGCACTTAGTTGTAATTTACAAGGCCGTAATAACG
ATAATACATGTAACAATTACTGTATATTCACCATTAATGCATGCTATGGT
TTATGTTCACCTGAAGATGAATGCTCCGGATCACCAGCAGGACAATACAA
ATGCGTATGTTTTAAAGCTGACGAAAGCAATGGAATACCATCAACACAAC
CACCAAGTggtaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064335-exon-scaffold_411-1491911889:175754..175796 | TCONS_00064335-exon-scaffold_411-1491911889:175754..175796 | Clytia hemisphaerica | exon |
| TCONS_00064335-exon-scaffold_411-1510915933:175754..175796 | TCONS_00064335-exon-scaffold_411-1510915933:175754..175796 | Clytia hemisphaerica | exon |
| TCONS_00064335-exon-scaffold_411-1575043694:175754..175796 | TCONS_00064335-exon-scaffold_411-1575043694:175754..175796 | Clytia hemisphaerica | exon |
| TCONS_00064335-exon-scaffold_411-1491911889:178133..178894 | TCONS_00064335-exon-scaffold_411-1491911889:178133..178894 | Clytia hemisphaerica | exon |
| TCONS_00064335-exon-scaffold_411-1510915933:178133..178894 | TCONS_00064335-exon-scaffold_411-1510915933:178133..178894 | Clytia hemisphaerica | exon |
| TCONS_00064335-exon-scaffold_411-1575043694:178133..178894 | TCONS_00064335-exon-scaffold_411-1575043694:178133..178894 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_411 | supercontig | scaffold_411:175754..178894 + |
Blast
The following BLAST results are available for this feature:
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