TCONS_00064336 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064336
Unique Name	TCONS_00064336
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	252

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_411:51024..57890-

transcript sequence

>TCONS_00064336 ID=TCONS_00064336|Name=TCONS_00064336|organism=Clytia hemisphaerica|type=transcript|length=252bp
aaaaaattataaattattcCCCGAATTTTCCcgatttcgatttcgatttc
aaTCAAGATGGCGGCCCAGAATGGAGGAGCTCGACGAGTTTTCGTTGTAG
GAGTTGGAATGACTAAGttTGAAAAGCCAGGCAGACGAGATGACTTCGAC
TATCCAGATATGGCTAAAGAATGTGTGACCAAAGCCCTTGAAGACGCTGG
GATATCTTACACAGAAATCCAACAAGCTACTGTCGGCTATTGTTACGGTA
TG

Run BLAST on NCBI

transcript from alignment at scaffold_411:51024..57890-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064336 ID=TCONS_00064336|Name=TCONS_00064336|organism=Clytia hemisphaerica|type=transcript|length=6867bp|location=Sequence derived from alignment at scaffold_411:51024..57890- (Clytia hemisphaerica)
AAAAAATTATAAATTATTCCCCGAATTTTCCCGATTTCGATTTCGATTTC
AATCAAGATGGCGGCCCAGAATGGAGGAGCTCGACGAGTTTTCGTTGTAG
GAGTTGGAATGACTAAGGTAATTAGCTCTTTTACACCATGATTTTCTACT
ATTGGTGCTAACTACTGCTTGGGAAGGGTCACACAAAACAAATGATATGC
ATATATTGGACTTTGTACCAGAGCATTTGCCATGCCCCTTGCCTTGCGAA
ATCACTATTTTATTTTGGTAGCTCTAAACACTAAAGCTCCACTGGCACTG
CTGTTCCCCTCAGGCAAAATCAGTCAGGGAAATCCCTCAATTGCAGTAGT
AATTTTTTACTGCAATTGCGGTATAAATGTCACTTTCGCATTTTTCATAT
ACCGCAATTGCAGTTATATTCAAAAAACAGAATTCAAGATTCAAGGCACG
TGCGTTTGGTTTGGGAACGCGAAACACGAACGCAAACTACTTATGTCTAA
ACTTTTCAATATATCTCCAGAACTAACAAATTTTTTGAAATTCTGTAAAA
AGGTCTAAGTTCCTGAATAGTTTTACTATGTTCTATGAAAATATCATAAG
CATCAGTCAAATACTCGTTCATCTATTTAAGATTGAAGACANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGATTGAAGACAAAAATTTGCGAAGAAAAA
TAAACCTTGAGCACAAAAAATGCTTTTTTAAACACTTTTTTCCACCGAAA
AACAAATAACTTTTACAGACTTTCCTTCCCCAAACATTGAAGAAGCCTCT
ACTAATTAAAGTAAATGAGATAAGATTTAAGATAAAACCATAAAGTCAAC
CAGAATTTACAACCTTTCGTCGGAAGCAAAAGACGTGCTTTTCTCGCCGC
CATTTTGTTTTAGAATGAGAATTCTAGAGAATTCCATTCGTTTCCAGCTC
CCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAGAAAATTGGAAAAAGCTGGTTTTTGACTGT
TTCTGATCCTAAAGTGCTATTTTTTGGTAAAAGCTATGCAATTTATGTTT
GGATTTCTAGAAAGCTTACCTATTCATTGTTAATTCATTTTTTATTTGAA
AGTAATCTCTTCATTGAATAAAAAGATATAGTCAAATCTTGTAGGGTCAT
TTTTCCAAAATCTTTTGCCAAATTTGATTTTCGCATTTCTCCATTTTACC
TTACGCAAACGCACGTGAAGGAGAAAACAAGCAATTTTTGTACATAATTG
ATCATATCTTTTTAATGCACAGAGACAAAATATTTTTTCCATAGATCACA
TTCATAATGTTCATACAATGTACTTAAAATTGCAAAATGCATCGGAAATT
CCACTCTTTTTTGCCTTTTTTAATTCAATTGCCTTGGAAATTCATACATT
TTCTTCTCTCGCCTTGGAAATTTCGAATTTTGGTGAAAACTTTTACCCTC
AGAAATCCTGTGTCATCTGCCCCCCTGTTACAGACAAATTCTGGAATGGC
CCAATGAAAAATGTGTTTTTTTATCAAAGCGTGTTCAAAACTGTACTTTT
TAAAGTTGCCAATTTGCGCGTAAAGGTGAAGCAAGTGAAATTGCATGCTT
TCAGGGGAGCGAGTTTGCGGATGAAATCAGAAAGAAATTGGCTGAATAGA
TTTTCCCAAAACTTGTTTTTTATCGGTATGTAGTTGGACCCCCCACATGT
GTCTGATTTAGAGATGCGTGTGTTAAAATGTTCGATCGAAGAAATAAGTT
TTCACCAATGTCTAAACTTTTGATTCGATTTAATTTACAAGCTTTTTGAT
ATTGAATTGACAAGAATGTGGAGCAAGATTGGTCAGAAAGCGGAAAAGAA
TAAATTTTTTTTGCTTATATCTGTCAGCATAATATAAAAAAAGGCAAACA
CTGTCCTGATATGAAACATGTGTCTGATATGGAACGGGAAAACTTATGTA
AAAATAAAACCTTTAAGCTAGGCTATTACTATTTTTATTACTTGCTTTTT
TGATACTTTTTGAAGGCTTCTTTGTTCGTCTCAACAATCATCCAATTTGA
GAAATCCGATGATGGACCATGACTTTGATGCTATTTGAATCAACTCTCCT
AAGAGGAAAGTAATTCGGCAGCAGTGGCTTGTCCGGTAGTCTGGTAGTGA
ATCGAGAAAATGGTCCAATTGATGTTTGAAATTAGTTTTGGAGCAGTTTT
TGAGGTTACTGATGGATTGTGGGAGGGCGTTAAATAGTCTGGGACCTTCT
TCTGACAGGGAGTCTCTCCATATGTTTTTTTGCCTTATGTTCACCTCTTT
TAGATAACATTTTTACCCAGTCTCTGGTTATCGTAACTGAAGATGCCACC
TTTGTTTTCAGCATAGTTAAAATTTGGTACAAGCTGTTCTAGGATGCTCT
AGGTGTAGATAATCCTGTATCATTCTCTGCGCCGCTCCAGGCTGTATATA
TAGTTTAAGTTCTTTGAGCTTCTCCCAATAGTTGAGATGTTGAAGTGTAG
GGATTCCATTCAGGTAAGATTTTTGAAGTGATTCCAGTTGTTGGATCAGA
TATCTCTTTGAAGGTGACCACAGCTGGAGCAATAGTCAATGTGTGGTAGT
ACCAGTGACTTCCAAAGAGTTAGCATTGCTTGACAATCTCTTGTTTTGAA
CGTTCAATGGATCCAAGCAATGATACTTTTGACTTTCTCGATCTGGTTTG
TGATGTTTGCTGTATGTCATGTTCAAGCCATTGAGCTGCATGTTGTTTAA
TGATGTCCATTGACACACCACATCAAGGTCGTTTTGTAGAAATTGAACAT
CTATCAGTGTTATTAGAGATCTCCTTCATTAAAACGTGTATCGTCAGCAA
ATGAAGATAGAAATGAATGTAGAATGTTAGTGTCAATATCTTGGATCATT
ATCAGGAAGAGAACCAAGGAACTTTGATTTTTGACATGGGTTCATGTATA
AAACATCTAATTCCGTTATTACGGGATTTTTAGGTTTTGCCTGGAAAGGC
TTATGATGACGTCATCACAAAACTTTCAATCTCCATAACTTTCGATAGGA
AGATTTTCAAGGCATGTTTTATACCTCAATTTTCATCAGCATTTCATGCT
CTTTCCGCTGAAACCATCAGATGTTAAATATTTTCAAAAAATTTTTTTTG
CCCAGCCACCTGATGACGTCATCTGGCAGGTGGCCAGGTAGGAAAATTTG
GTGTTACTGTTTATAATTAAGTTTTAGACCCTGTAAGGATCATCTGTGTC
AAATTTCATGCTTTTATCACCATTTGAAGTATTTTTGTGCTAACTGACCT
CACTATCAGGGCCTCTGAACCGTTCTTGTACAAAAAATCTTTTCAAGATA
CAACTTTTTAACAAGGGCTTATCTTTTTCCACTCTTTGATTTTTGTTCTC
TCTCAATTTTTGTCAATTCATCGGTGATCTTAATTTCACGAACTTCTCGT
GTTGTTTCAATTCAGTCAACTTCTTCATGAATCTGTATTTGATATGACTG
TTTTTGAACGCAACTTTGATTGGGCGCATAACTTTCTGTTAGTCACACTA
TGAAATCAAGCCTTAATAAAAAACTTAACATCAGTCATCTACAGGATGTA
TTTGTAGCAACAAGGATGAGAGTTACCTGAATCAAGCTCAAGATCCCAAG
ACAATTACAGGGCTGCAAATAAGCGTCGGTCATCAGTCAATGTCCGACTG
AAAAAGCTATTTGACCGACTGAAAATCTTTTGTATCGGTTATGATGTCCA
AATGAAAAAAGGAACAAACCATTAACTTGAGAGTTGAAAATAAATCTCTT
ACACCCCTGTCTCTTACTTAGCCTATTCTTTTAATACTCGGTTCCTTTGT
AGCTTTCAGGGTGTTTCTAAGTTAACTTTTATCGACTTGCTTTCTTCGTT
ACTTTCTTTGTTTCTAAGATCACTTTTATCAACCTGCTTTCTTTGTAACT
CTTTTAAGGATGTTTCTAAATTACTTTTGTCAACTAGCTTTCTTCGTAAC
CTTCTTTGTTTCTAAGATCACTTTTATCAACCTGCTTTCTTTGTAACTCT
TTTAAGGATGTTTCTAAATTACTTTTGTCAACTAGCTTTCTTCGTAACCT
TCTTTGTTTCTAAGATCACTTTTATCAATTTGCTTTCTTTGTAACTTTCA
AGAGTTTTCTTAAGACCATTTTCATCAACTTGCTTACTTCATAACTTTCA
AGAGTAGTGTTTCTAAGTTAACTTTTATCAACTTGCTTTCTTCGTAACTT
CCAAGGGTGTTTCTAAGATCACTTTTATCGAATCAATTTCTCTGTTATAT
ACAGTAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATACACTGAATG
ACCGACAGGATTTTGAGTTTGACCGACAGGATTTCATTTCTGTCGGACAT
GATGTCCGATTGACTAAAAATATTTATTTGCAGCCCTGCAATTAATTAAA
ACTTGAAAGTTGAAATGAAACAAAAAAATGACGATTGCTATAAACGTGCA
GCAACGCGAATCAACTAACTAAATTTCATCATTCAATTCCTGAGACAGCG
CTTCGATTTGTTAGGCCTTGATTACACGATAAAGTGAAATTAATTTCGCA
CATGTAAATGGGTCAGTGTTTAAGCTCTGGCAAATTGTAATAACCCTTTA
ATAATTTATTTTTTTTACTTTCAGTTTGAAAAGCCAGGCAGACGAGATGA
CTTCGACTATCCAGATATGGCTAAAGAATGTGGTAGGTTTATGAAAGTTC
ATTTTGGCTTAAGTGCACACTCTTTTTTTGAACGCTTCTTGAACGCTGAT
TTTCAGATCTCTTCTTTAAGTTTCCTAATTTAAACATTAGGGAGATAATC
ATGTCAGCTAATTCTCACACTCCCTTTTGCTCATTTGAATTCGAAATTGA
TCCAAAAACCATGAGGGGGTGTATAGTGCTAAGGTTCGTGCTTGTTGTTT
ATTTGTAGACATGACCTCGGAAAACCAACTATTTGAGAGACTAAATTTTT
TGTAAAGAAGTTACCCTAGAGAGACTACGTGAAGAGTGACCTTTAGTTCA
AGTACAATATGTTAATCACACAATACGCTGCAATACGTGCTCACTCAGTA
CCATGATATCAGCAAAATAAGATAGAAATAATCTAATAAAGATGAAAGAT
ACAATTTGAAACCTTTGAAAGGTTTTTTCTTACTTTTCCTTGTTTTTGAT
TGTTTTGTACCCTTTTTAAAGAGACCCAACACCTACCTTAAGGGAACTAA
TTTTTGCGGGAACTAAATTTTGCGGTTTTTGCGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTCACAGTACGGCTCTAATTTTCTTTCAAGTGAGAAATCCGCAAA
ATTAAGTTCCCGCAAATATTAAATATTAAATCTTGAACTGCGAACCGCAA
AAATTAGTTTCCGCAAAAAATAGTTCCCTTAAGGTATCTTACCTCTGTGT
CTGAAAAGGTATTCGTGGATAAAGGTATTCCAGGTGCAGAAAGAAAGCTT
TAGCATGACTTTGGATAACACTGACGCATTTAAGACCATAGAGCAAGTAC
GTCGGAAACATGCGAAGGAGTGCAATGAAATTACAATTACAAATCTCTTC
CCCTGATAAGTCTTAAAACCGCCTATGGATAACATTTTCATTATTTCCAT
CTGTAGGAAAATTAGGCTTGGAGAATGTGCAAAAAAAGTATAAAATTCAT
GATGGTAAGATTCTAAGGATCTCATTATGTTTTTGGTCAATTTCATCATG
ATCGTTCTTATTATCATATATTTTGAATTTCCTTATTTAGTGACCAAAGC
CCTTGAAGACGCTGGGATATCTTACACAGAAATCCAACAAGCTACTGTCG
GCTATTGTTACGGTATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040340	XLOC_040340	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00064336-exon-scaffold_411-1575043694:57774..57890	TCONS_00064336-exon-scaffold_411-1575043694:57774..57890	Clytia hemisphaerica	exon
TCONS_00064336-exon-scaffold_411-1575043694:52409..52466	TCONS_00064336-exon-scaffold_411-1575043694:52409..52466	Clytia hemisphaerica	exon
TCONS_00064336-exon-scaffold_411-1575043694:51024..51100	TCONS_00064336-exon-scaffold_411-1575043694:51024..51100	Clytia hemisphaerica	exon
TCONS_00064336-exon-scaffold_411-1510915933:57774..57890	TCONS_00064336-exon-scaffold_411-1510915933:57774..57890	Clytia hemisphaerica	exon
TCONS_00064336-exon-scaffold_411-1510915933:52409..52466	TCONS_00064336-exon-scaffold_411-1510915933:52409..52466	Clytia hemisphaerica	exon
TCONS_00064336-exon-scaffold_411-1510915933:51024..51100	TCONS_00064336-exon-scaffold_411-1510915933:51024..51100	Clytia hemisphaerica	exon
TCONS_00064336-exon-scaffold_411-1491911889:57774..57890	TCONS_00064336-exon-scaffold_411-1491911889:57774..57890	Clytia hemisphaerica	exon
TCONS_00064336-exon-scaffold_411-1491911889:52409..52466	TCONS_00064336-exon-scaffold_411-1491911889:52409..52466	Clytia hemisphaerica	exon
TCONS_00064336-exon-scaffold_411-1491911889:51024..51100	TCONS_00064336-exon-scaffold_411-1491911889:51024..51100	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_411	supercontig	scaffold_411:51024..57890 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.3128	54.3285	55.5109	80.6402	83.1454	74.4102	43.9314	59.9038	21.283	35.6669	32.3614	36.1148	60.7663	58.4889	49.773	74.2365	54.0913	40.5811	30.7963	27.2682	18.6735	26.2739	27.255	26.3274	55.8283	49.8254	33.6129	30.4373	30.506	38.641

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00064336 vs. Swiss-Prot (Human)

BLAST of TCONS_00064336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00064336 (transcript) - C. hemisphaerica