TCONS_00064348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064348
Unique NameTCONS_00064348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064348 ID=TCONS_00064348|Name=TCONS_00064348|organism=Clytia hemisphaerica|type=transcript|length=707bp
GTACGGTCTAGTTGTGCAAATATTGTGCACAAAGgcgtaaaagcatgaaa
ctttgcacaatggtagtttaggagtcaaaaatggatttaaatctcagacc
caaaaaattgacacctgtttgtgtattttacagaccagaataggtttcca
gactaaaatgaaaattcttttctCCAAAGTATGTCATGTTACATACCGTT
GGAAAGCATTTTTCATGCCCGTTCAGAAAAACATTAcaacccatatctga
aaatgaagccaataaaagttattggggaagattgtttgaaaaatgaccga
aaatgacaTAATTGCTGACGTAAGCAAAAATTCCAGGACCACACAGACac
gtttatttttgtgaaattcaatagaGGATCTTTCAATGACCAAATGGATA
GCTTTGCTTGAGAGTTAACCTCACTTGACATAGAATATGGCGTTTTCATG
ACCGATCGAAAGCCTTAGGCTAAAGGGTTTGCACCGGGCATGCCCATGGT
AGAGCATTACTAAGGCAAAATTTGTCAACCTAACAATACTCAAAAAAACT
ATTGTGAAATAAGCTTGCAGCTGATCTAGCCAATAGTATTTAGTACCTGA
GAGGTTCtctattgaatttcacaaaaataaacacgtTTGGGTGGTCCTGg
aatttttgctgacatcagcaattacgtcattttcggtcattttttaaaca
accTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_411:4563..5269

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064348 ID=TCONS_00064348|Name=TCONS_00064348|organism=Clytia hemisphaerica|type=transcript|length=707bp|location=Sequence derived from alignment at scaffold_411:4563..5269 (Clytia hemisphaerica)
GGAAggttgtttaaaaaatgaccgaaaatgacgtaattgctgatgtcagc
aaaaattcCAGGACCACCCAAacgtgtttatttttgtgaaattcaataga
GAACCTCTCAGGTACTAAATACTATTGGCTAGATCAGCTGCAAGCTTATT
TCACAATAGTTTTTTTGAGTATTGTTAGGTTGACAAATTTTGCCTTAGTA
ATGCTCTACCATGGGCATGCCCGGTGCAAACCCTTTAGCCTAAGGCTTTC
GATCGGTCATGAAAACGCCATATTCTATGTCAAGTGAGGTTAACTCTCAA
GCAAAGCTATCCATTTGGTCATTGAAAGATCCtctattgaatttcacaaa
aataaacgtGTCTGTGTGGTCCTGGAATTTTTGCTTACGTCAGCAATTAt
gtcattttcggtcatttttcaaacaatcttccccaataacttttattggc
ttcattttcagatatgggttgTAATGTTTTTCTGAACGGGCATGAAAAAT
GCTTTCCAACGGTATGTAACATGACATACTTTGGagaaaagaattttcat
tttagtctggaaacctattctggtctgtaaaatacacaaacaggtgtcaa
ttttttgggtctgagatttaaatccatttttgactcctaaactaccattg
tgcaaagtttcatgcttttacgcCTTTGTGCACAATATTTGCACAACTAG
ACCGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040347XLOC_040347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064348-exon-scaffold_411-1491911889:4563..5269TCONS_00064348-exon-scaffold_411-1491911889:4563..5269Clytia hemisphaericaexon
TCONS_00064348-exon-scaffold_411-1510915933:4563..5269TCONS_00064348-exon-scaffold_411-1510915933:4563..5269Clytia hemisphaericaexon
TCONS_00064348-exon-scaffold_411-1575043694:4563..5269TCONS_00064348-exon-scaffold_411-1575043694:4563..5269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_411supercontigscaffold_411:4563..5269 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.16553	4.32723	3.55785	3.88347	14.8655	6.33492	9.05858	11.8954	5.70101	7.51038	7.91322	6.12167	11.3898	11.614	9.92845	10.2943	7.3736	7.98713	14.5258	14.001	14.8779	12.9895	6.46823	6.73079	1.21227	3.94481	13.1567	16.6882	17.9627	15.2632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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