TCONS_00064411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064411
Unique NameTCONS_00064411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064411 ID=TCONS_00064411|Name=TCONS_00064411|organism=Clytia hemisphaerica|type=transcript|length=748bp
AATATGTGTCCAAGTAGAATTGTAGAATTTAAATAGAAGCACTTTTGGGG
TCTTCTAGTCTgctagtttgtttacatttggtaatTTTGGCCCACATGTT
TCCTGACTCTGATGACTTGTTTGGACCATATTTCCAGGGACAACATGGAT
ACAAAACNATACCCCTTGGAATCTTGATCAACCGTACAACATCTAGAGCA
TGCAGGAACGTTAAATTGTGGAATCGGAGGATAGTTTTCGATGTTCTATC
CTTTTCCTCGGCATACATAATCTCTTGGATTTCACACAATTGTTGAAGAA
TTTTGAGGTTGCAAGGCACTGCCTGGTAGATGTTTTTGATGTGACCCGCT
ATGGTGTGAAGTGGCTCTACTGGCAAAATTTCGTAGTCTTCATGACCAAC
ATCTTTCAACTCCATCTTCCGGGATTCGTACAAAAATGCAGGCAGATGGT
GTATTCCAGTTATTTCGTTGTCGTATTTTCCTTTCAACATGTCTTTATTT
TAACCTCGCGTTCGTGGAGCTGACTGATGATATCCGGCTTGGTGATTCTT
TCGGAAGGATTTACGATGCCGTTTACGATCGATTGTCTTCCGTAGCAATG
CTATGGGAGTTTGAGGTACCAACTCGTAACCAAAAAGAATCAAACGTAGT
TATGGTCATGAATCAAAAACATTTATGGAATATACAACACCTCATTCCTG
AAAGAGTCGACAAAACTCTTTTCGTGTCAAAATACTGCTCCaggtaaa
Run BLAST on NCBI

transcript from alignment at scaffold_414:7656..9399+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064411 ID=TCONS_00064411|Name=TCONS_00064411|organism=Clytia hemisphaerica|type=transcript|length=1744bp|location=Sequence derived from alignment at scaffold_414:7656..9399+ (Clytia hemisphaerica)
AATATGTGTCCAAGTAGAATTGTAGAATTTAAATAGAAGCACTTTTGGGG
TCTTCTAGTCTgctagtttgtttacatttggtaatTTTGGCCCACATGTT
TCCTGACTCTGATGACTTGTTTGGACCATATTTCCAGGGACAACATGGAT
ACAAAACNATACCCCTTGGAATCTTGATCAACCGTACAACATCTAGAGCA
TGCAGGAACGTTAAATTGTGGAATCGGAGGATAGTTTTCGATGTTCTATC
CTTTTCCTCGGCATACATAATCTCTTGGATTTCACACAATTGTTGAAGAA
TTTTGAGGTATGGTTTCTCTAGCTTATCCTTCATATCTGTTCATATAGAT
GGTAACGTCTATGAGACTGCAACGATAGTCTGTACACCATTTCGCATCTT
TCCCTAGATTtttaaaagttgatattttaATCATAATCAAATACATGAGA
CTGGTTTATGctattagttacacggtcttctTGAAGTGGGATACAGGATT
GAACCTTTAAGATGGCATAACTTATGTTTTTCGAACATATGGAATCTCAA
AGTTCTACTTTAAAGGAGCGAGTTCTCAGTTTATTTACCTGAAAACGAGG
CATCGATCGCATCTTCCAACtcttgcttttcttttttcaacagGTTGCAA
GGCACTGCCTGGTAGATGTTTTTGATGTGACCCGCTATGGTGTGAAGTGG
CTCTACTGGCAAAATTTCGTAGTCTTCATGACCAACATCTTTCAACTCCA
TCTTCCGGGATTCGTACAAAAATGCAGGCAGATGGTGTATTCCAGTTATT
TCGTTGTCGTATTTTCCTTTCAACATGTCTTTATTTTAACCTCGCGTTCG
TGGAGCTGACTGATGATATCCGGCTTGGTGATTCTTTCGGAAGGATTTAC
GATGCCGTTTACGATCGATTGTCTTCCGTAGCAATGCTATGGGAGTTTGA
GGTAGGCTTGACGATTTATCAGAAATTCCGCTCAATTTTATATAGAAAct
gaatttttggaaaatagttacTCCATAGATAagggtggtgcctaagccca
aaattgtcgattttagtagaatatggtgtactaagtgagcacattatttt
ttaaattttaggcttttaaaaattccggaagcaaaaaaatgcaaaatatt
tttttcaaaactaaaaaaattcactattttttcaatcatgaaagatattt
taacatacttggaaaatgattgagatatttaactcttgaacggttgTTAG
TAAGACATACCCAATAAAGCTGTATCataaatgaggaattcagtgaaata
attgccaaatttggcatttttgggggtggtatataCCAATTTTGAGGGTC
AAATCAATTAGTACACCAGAGAACTATGGagtaactgcaagggtggtggt
gtctgaaaacaatgtcaaaaattgcagttactccacatagtgtaaGACCC
CCCTGGAGTATATGAAAAAGTCCTTAAATTTTTACAGAAATCTCCTCGGA
AAAGTGAAAAATCCTATATTCtccttaaatttgaaattttgaaagctgtG
GGAACCCTGATTGTAGAAAGTAGTGCATGTTAATAGTTTCTGCAATCATC
TTTCATTTAAGGTACCAACTCGTAACCAAAAAGAATCAAACGTAGTTATG
GTCATGAATCAAAAACATTTATGGAATATACAACACCTCATTCCTGAAAG
AGTCGACAAAACTCTTTTCGTGTCAAAATACTGCTCCaggtaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040389XLOC_040389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064411-exon-scaffold_414-1491911889:7656..7962TCONS_00064411-exon-scaffold_414-1491911889:7656..7962Clytia hemisphaericaexon
TCONS_00064411-exon-scaffold_414-1510915933:7656..7962TCONS_00064411-exon-scaffold_414-1510915933:7656..7962Clytia hemisphaericaexon
TCONS_00064411-exon-scaffold_414-1575043694:7656..7962TCONS_00064411-exon-scaffold_414-1575043694:7656..7962Clytia hemisphaericaexon
TCONS_00064411-exon-scaffold_414-1491911889:8299..8606TCONS_00064411-exon-scaffold_414-1491911889:8299..8606Clytia hemisphaericaexon
TCONS_00064411-exon-scaffold_414-1510915933:8299..8606TCONS_00064411-exon-scaffold_414-1510915933:8299..8606Clytia hemisphaericaexon
TCONS_00064411-exon-scaffold_414-1575043694:8299..8606TCONS_00064411-exon-scaffold_414-1575043694:8299..8606Clytia hemisphaericaexon
TCONS_00064411-exon-scaffold_414-1491911889:9267..9399TCONS_00064411-exon-scaffold_414-1491911889:9267..9399Clytia hemisphaericaexon
TCONS_00064411-exon-scaffold_414-1510915933:9267..9399TCONS_00064411-exon-scaffold_414-1510915933:9267..9399Clytia hemisphaericaexon
TCONS_00064411-exon-scaffold_414-1575043694:9267..9399TCONS_00064411-exon-scaffold_414-1575043694:9267..9399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:7656..9399 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18003	1.34263	0.482101	0.550315	64.3369	50.3726	25.5983	31.667	14.1213	17.811	13.0608	12.2619	12.943	12.2747	6.2454	9.04803	10.1176	7.96763	6.69159	9.11368	12.0209	14.1642	4.35892	6.45126	18.8624	23.8434	13.6227	9.9422	5.63298	5.70463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top