TCONS_00064423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064423
Unique NameTCONS_00064423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064423 ID=TCONS_00064423|Name=TCONS_00064423|organism=Clytia hemisphaerica|type=transcript|length=277bp
ATGGAATTGAGATTCAGTAAGTATACTTGATTTCCTCTGTGGTACTTTTA
GCTTTATCTAGGGAAAGCATTCTGGCATTGACTTCAtagttggaaatttc
aagtttcgacaacaaaaacattgcaaagTTCAAATAACTTTAACATGTGA
TATTTATAAAGTCTGACTATTGATGGGCCATGATTTTGACAGGTCAGTGG
ATTGACTCACAAGgctttgacaatttttcagccaaaacataATTTCATCG
GTGGACTTTACCAGTTTACAGTCTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_414:9660..9936

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064423 ID=TCONS_00064423|Name=TCONS_00064423|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at scaffold_414:9660..9936 (Clytia hemisphaerica)
CACAGACTGTAAACTGGTAAAGTCCACCGATGAAATtatgttttggctga
aaaattgtcaaagcCTTGTGAGTCAATCCACTGACCTGTCAAAATCATGG
CCCATCAATAGTCAGACTTTATAAATATCACATGTTAAAGTTATTTGAAc
tttgcaatgtttttgttgtcgaaacttgaaatttccaactaTGAAGTCAA
TGCCAGAATGCTTTCCCTAGATAAAGCTAAAAGTACCACAGAGGAAATCA
AGTATACTTACTGAATCTCAATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040397XLOC_040397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064423-exon-scaffold_414-1491911889:9660..9936TCONS_00064423-exon-scaffold_414-1491911889:9660..9936Clytia hemisphaericaexon
TCONS_00064423-exon-scaffold_414-1510915933:9660..9936TCONS_00064423-exon-scaffold_414-1510915933:9660..9936Clytia hemisphaericaexon
TCONS_00064423-exon-scaffold_414-1575043694:9660..9936TCONS_00064423-exon-scaffold_414-1575043694:9660..9936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:9660..9936 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.00332	1.13498	0.569861	2.08125	0	1.32279	0	0	0	0	0.468161	0.422162	3.01104	3.21328	5.75625	0.386188	0.547688	0	1.93963	1.362	0	0	1.28772	2.76166	2.22463	0	2.00357	6.36388	6.87602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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