Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064440 ID=TCONS_00064440|Name=TCONS_00064440|organism=Clytia hemisphaerica|type=transcript|length=2423bpRun BLAST on NCBI protein sequence of F-actin capping protein subunit beta >TCONS_00064440-protein ID=TCONS_00064440-protein|Name=F-actin capping protein subunit beta|organism=Clytia hemisphaerica|type=polypeptide|length=272bp MGDKQLDCALDLMRRLPPQQIEKNLSDLIDLRPELCEDLLSSVDQPLKIARun BLAST on NCBI transcript from alignment at scaffold_415:10331..23800- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064440 ID=TCONS_00064440|Name=TCONS_00064440|organism=Clytia hemisphaerica|type=transcript|length=13470bp|location=Sequence derived from alignment at scaffold_415:10331..23800- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_415:10331..23800- >TCONS_00064440 ID=TCONS_00064440|Name=TCONS_00064440|organism=Clytia hemisphaerica|type=CDS|length=7371bp|location=Sequence derived from alignment at scaffold_415:10331..23800- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064440 vs. Swiss-Prot (Human)
Match: CAPZB (F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4) HSP 1 Score: 462.996 bits (1190), Expect = 3.826e-157 Identity = 220/270 (81.48%), Postives = 239/270 (88.52%), Query Frame = 2 Query: 197 MGDKQLDCALDLMRRLPPQQIEKNLSDLIDLRPELCEDLLSSVDQPLKIARDKETGKDYLLCDYNRDGDSYRSPWSNTYDPPLDDGALPSDRLRKLEIDANAAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIRGCWDSIHVVEVQEKSGGSKAHYKLTSTAMLWLQTNKASSGTMNLGGSLTRQTEMDNAVSDSNPHIINIGRMIEDMENKIRNTLNEIYFGKTRDIVNSVRSINNLEDKKKQNNLQAELFKNLKARQ 1006 M D+QLDCALDLMRRLPPQQIEKNLSDLIDL P LCEDLLSSVDQPLKIARDK GKDYLLCDYNRDGDSYRSPWSN YDPPL+DGA+PS RLRKLE++AN AFDQYR++YFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKI+GCWDSIHVVEVQEKS G AHYKLTST MLWLQTNK+ SGTMNLGGSLTRQ E D VSD +PHI NIGR++EDMENKIR+TLNEIYFGKT+DIVN +RSI+ + D +K LQ EL + L RQ Sbjct: 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSIDAIPDNQKFKQLQRELSQVLTQRQ 270 The following BLAST results are available for this feature:
BLAST of TCONS_00064440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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