TCONS_00064461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064461
Unique NameTCONS_00064461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064461 ID=TCONS_00064461|Name=TCONS_00064461|organism=Clytia hemisphaerica|type=transcript|length=668bp
ATGAACAATAATGAACAAACGTTGTATAGAAACCACAGGTTAAATCAAAC
CCAAGCAACTTAATTATTAATGCTCTGATTTGATTATTTGTGGAAACTAA
ACGTCTATAGCAACGTCCAACATGGATTCAATCGATTTTTAAACCGATGG
CCGCTCTTCAGATAACCACCAACCTTGTGTCGGACACGATGTGACTATTG
AAAACGTCCACGACTGCTCCTCTTTTGTTTATGAGCCAATCACATTGGTG
TTTATCGTACAAACTATTTGTATTGAGATCATATGAATCACCTAAACGTT
GACCACGATGACTTTCCGATTTTCGATGAGCATGATAAGACTTTTAGATC
TTTCTTAGCTGATTTTAATGAACTGTCTTCCGTTGCTGAATTGAGTGACA
ACCAGAAGCTGACTCTACTACCAACCCGTTTGAGACGAAGACCAAAATGG
TAATTTCGAGGACTAAGCAACGAGCGAAAGAATACGTATGATAAAGACAT
TGAAAGTCTGATTACTGAGTTTGACAATGAATCTCTTTTGAGAAAGGATC
TCTATTCTATCAAACAGGGTCAATCTACGTTAGATGAATATGTTGAGAAA
ATGGAACAAATGTTTACCGAGCTGAATGTTAAACCAGATGAAAAGTTAGA
TTTCTTTATGGCTGGTTN
Run BLAST on NCBI

transcript from alignment at scaffold_415:129846..130513

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064461 ID=TCONS_00064461|Name=TCONS_00064461|organism=Clytia hemisphaerica|type=transcript|length=668bp|location=Sequence derived from alignment at scaffold_415:129846..130513 (Clytia hemisphaerica)
NAACCAGCCATAAAGAAATCTAACTTTTCATCTGGTTTAACATTCAGCTC
GGTAAACATTTGTTCCATTTTCTCAACATATTCATCTAACGTAGATTGAC
CCTGTTTGATAGAATAGAGATCCTTTCTCAAAAGAGATTCATTGTCAAAC
TCAGTAATCAGACTTTCAATGTCTTTATCATACGTATTCTTTCGCTCGTT
GCTTAGTCCTCGAAATTACCATTTTGGTCTTCGTCTCAAACGGGTTGGTA
GTAGAGTCAGCTTCTGGTTGTCACTCAATTCAGCAACGGAAGACAGTTCA
TTAAAATCAGCTAAGAAAGATCTAAAAGTCTTATCATGCTCATCGAAAAT
CGGAAAGTCATCGTGGTCAACGTTTAGGTGATTCATATGATCTCAATACA
AATAGTTTGTACGATAAACACCAATGTGATTGGCTCATAAACAAAAGAGG
AGCAGTCGTGGACGTTTTCAATAGTCACATCGTGTCCGACACAAGGTTGG
TGGTTATCTGAAGAGCGGCCATCGGTTTAAAAATCGATTGAATCCATGTT
GGACGTTGCTATAGACGTTTAGTTTCCACAAATAATCAAATCAGAGCATT
AATAATTAAGTTGCTTGGGTTTGATTTAACCTGTGGTTTCTATACAACGT
TTGTTCATTATTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040424XLOC_040424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064461-exon-scaffold_415-1491911889:129846..130513TCONS_00064461-exon-scaffold_415-1491911889:129846..130513Clytia hemisphaericaexon
TCONS_00064461-exon-scaffold_415-1510915933:129846..130513TCONS_00064461-exon-scaffold_415-1510915933:129846..130513Clytia hemisphaericaexon
TCONS_00064461-exon-scaffold_415-1575043694:129846..130513TCONS_00064461-exon-scaffold_415-1575043694:129846..130513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:129846..130513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.179244	0.0584749	0.244498	0	0.328023	0.173531	2.32052	3.62139	2.70016	1.82149	2.16559	1.6926	7.23195	6.88148	12.0057	22.2688	13.5255	14.5699	1.85738	2.92573	13.5101	15.6937	14.2727	15.9867	0.174187	1.15759	4.0212	1.52692	0.354857	0.532652
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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