TCONS_00064470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064470
Unique NameTCONS_00064470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064470 ID=TCONS_00064470|Name=TCONS_00064470|organism=Clytia hemisphaerica|type=transcript|length=2029bp
caattttttgggtaaatttcaggcaaaaaaacagctaaaaaaggATGCCT
GAGGTTTGCTTGAAAGACTGTCAAGCATGGAGGGATGTTGGCCTCACGAT
GACTACTACAAGTAATGAGGCATGTAAATTATTTGATGATGTGATCACCC
AATATATCACATGGACGGAGAGTCCTGATGGTATGGAAAATACCGTCGTA
AAGCTACTTGAATCTGACTCTAATTTCATGATGGGTCAAGCTTTATCGAT
TGGGTTGGATATGATGGGAACTGGTCGTGCTCTTCATTTGGATAAGGAGT
TAGCGGAACAAATTAATAAATTTGAAAGTGATTTCAATAAGTCTGAGATT
ACACCAcgagaaaaattacactgccaAAGTGTGGTGTATTTTGCTAAAGG
TGAATATACGAAAGCCTGTGAATCTTGGGAAGAGATTTTGAAAGTCNGCC
AAAGTGTGGTGTATTTTGCTAAAGGTGAATATACGAAAGCCTGTGAATCT
TGGGAAGAGATTTTGAAAGTCTATCCTAAGGACAGTTTAGCTATCAAGTT
TGCGCATGATAGTTATTTTTATCTGGGTGATTCGGTCAAGATTCGGGATA
GTGTGGACAGAGTTTTACCATACTGGAAATCGAGTGATCCCTTATATGGT
TATCTTAAAGGAATGCTCGCCTTTGGTTTAGAAGAAACATACCGATACGA
AGAAGCTCAAAAAAGTAGCGAAGAAGCTCTCTCGTTAAACCCAACGGACT
GTTGGGCTACGCATGCTAAAGCTCATTGTTTTGAAATGACAGGACGTTTT
AATCAAGGAATCGAGTTCTTAAAAGATACTGAGAATGATTGGGCTAAAGG
TCGAATGCTAGCCTGTCATAATTATTGGCATTGGGCGCTTTATCATATCG
AACGAGGAGATTATGAAACAGCATTAGGAATCTATGATCATCAAGTTGAA
GAGAGAAGTAAGAGCTCGGGGGCTATGCTGGATATGGTCGACGCGGCTTC
CTTACTACAAAGATTCGAAATGCAAGGAGTCAACGTTGGTGATCGTTGGA
AAGAAATTTACGAGTTGGCTTTACCACATATTAATGATCATATCACTGTG
TTTAATGATTTTCATATGACGATGGCTTTCCTAGGGTGTGGGAAAACGGA
TGTTGCGTCCCGTTATATGAAATCGCTGAGAGATTACTGCGCTCATCATT
CTAGCTACAGTCGAGATTTGTTTCATAAAATGGGTGTTGATCTTTGCGAT
GGCTTAATAGCATTTTCTGAGGACCGATTTGATGCAGCAGTTCAGTTGTG
GTACCCTTTGAAAGATGACGTCATCGGTATGGGTGGAAGTCATGCACAAC
GAGATGTTTTTGATCAACTTTTGTTAAACGCTTGTATCGATTCCCCGAAA
AATGAAGACCGTGATTTAGCGCAACAAATGTTGAGTGAACGCAAAAAGAA
GAGAGAAAATTCTCCACTCACGGACAGGTTAATGCAGAAACTGCTTGCGA
AACATTAGTGATACGTTGATCAGCTAACATAATATACACTGAAATGTACT
GGTCGTGTTAAAGACAACGGAGAGCATATTTCACTTCTTTTACTTCTTCG
ATTTTAGTTTCATTCATGAGACACCCATGTCTTATTGAGTCAGCTCAGTT
GTTGTGAAATCAATCGGGGTGgctatgaaaaaataaatttcaccGGGTTT
GAATTTGAATCTTAGCTCACTGAGGGTGAGAACTTTTAGCTGTTTCACCA
GGGTGGGGTAAATgctttcattttaaagcattcGAGAGTTGGTTTACCTA
GAATTCACTTACTATTAATAtgtacttttttgtttttaccaGGTTGCCCT
AATTTATGCAATTTTTGACCGGGGTAGGACAATAAATATTCAAGTTTTGA
TCCGGGGGGGGGTAGAGAACTTTACCGCGGgttacacgtctttttttttt
taagaaacacacttttaagaaacatgaggcttagaatgcctaaaaactaa
gaaacatctaagaaacatgctgaggctga
Run BLAST on NCBI

protein sequence of TCONS_00064470-protein

>TCONS_00064470-protein ID=TCONS_00064470-protein|Name=TCONS_00064470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
MPEVCLKDCQAWRDVGLTMTTTSNEACKLFDDVITQYITWTESPDGMENT
VVKLLESDSNFMMGQALSIGLDMMGTGRALHLDKELAEQINKFESDFNKS
EITPREKLHCQSVVYFAKGEYTKACESWEEILKVXQSVVYFAKGEYTKAC
ESWEEILKVYPKDSLAIKFAHDSYFYLGDSVKIRDSVDRVLPYWKSSDPL
YGYLKGMLAFGLEETYRYEEAQKSSEEALSLNPTDCWATHAKAHCFEMTG
RFNQGIEFLKDTENDWAKGRMLACHNYWHWALYHIERGDYETALGIYDHQ
VEERSKSSGAMLDMVDAASLLQRFEMQGVNVGDRWKEIYELALPHINDHI
TVFNDFHMTMAFLGCGKTDVASRYMKSLRDYCAHHSSYSRDLFHKMGVDL
CDGLIAFSEDRFDAAVQLWYPLKDDVIGMGGSHAQRDVFDQLLLNACIDS
PKNEDRDLAQQMLSERKKKRENSPLTDRLMQKLLAKH
Run BLAST on NCBI

transcript from alignment at scaffold_416:18140..24199-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064470 ID=TCONS_00064470|Name=TCONS_00064470|organism=Clytia hemisphaerica|type=transcript|length=6060bp|location=Sequence derived from alignment at scaffold_416:18140..24199- (Clytia hemisphaerica)
CAATTTTTTGGGTAAATTTCAGGCAAAAAAACAGCTAAAAAAGGGTTTGT AATTGACCTACCACGGTGGGGTAGAGGTCCTATAAATTAACCTGTGTTCG TTCGTTCGTTTGTCTGTTCGTCTGTTATCAACTCTTCTCAGGATTGAATC ATAGGAATCTTTTGATTTTTGGTACTAAGGCGCAAAATGGTGGTGGCTAA AATGTGAAGGAGCTTGATTTTCGAAAAAAAATTCTTTGGGCAAATTTCAG CCAAAAAAACGGCTTAAAAAAGGATTTTTAAAGGGACATAAAAGTAGTAA AATGTAAACATTCACGAACCACATGTCATTAAAGAGAACAATTGAAATCA CGTGTCCAAAACAAACTTGTAAAACAATTGAACAATCAAAATTAGCCATA TTTGGTTTGATTTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTAT CCGCTGCATACAGTTTGTTTACAAATTTTGCAAGTACTGTTATGTCCCTT TTTAGACTTTGTGAAAAATTGGATCATTAATTTTTTCTGATTTTTTTGCA TGAAAGTAGGGTATCATCATTGGTAAAAGATGGCTGAAGCAGATTTTCAC AAAAAAAAAATTTCGGCTCAAAAAACGAATCTTTATCTATAAGAATCGCT ATTTATAAGCATAGATCAATGTTCTTAGCCATATTATTTTTATTAGTTTT CTTTAAGAAGAAAATGTCACGGTAGGGCGGGATGGTTTGAGTTTCTAGAA ACCTTCTTTAGTAAGCTGTGCATTTTTCTGATAGTGGATTGTTCTTATAA AAAAAAATGATAATAAAATTCAATAGTGTTGATAGTTTCTCCCAATAGAT ATGTTGTCAATAATATTGTTTTGTACTTTAACCAGTTATGTCTTATGTGT ATCATTGTTTCAATGTTCATTGATTAGTTTTGATATCCAGGTAGGTCCAT AAAAGTATCACTTTGACCGACCCTAAAAATTTTTTCGTTTCCGGTCCACC GGCTGGGTGAAACTTTTTTTCGTCATCACCCGGCCGCATTTTTTTCTTCA TAAGAACCAAATAGATAACAGATGAAACTTTCTTCTTAAAAACCTTTACT CATGACTCATTCAAACTGTTACATCGTTCCTATATAACACTCTTCAAAAA GTAAGGAAGGGAAGTAAAGTAAAGGAATTATATGGTGCTATATACACCCG ACTCGTCTGAAACTGATGTCAGCAAAATTTTAATAAAAGAGTCCTTTCAA ATTTGTAAATAAAAGGAAGAAATCCTTGTGGACCCACATTTTTCTTTATT CATTACAAAAGATTCTATTTATTTCAATCTGCTGAATCAACATACATTAT TATGGCGCGCCAAAGCGGAAATAAATCCTATCTCTTTAAAACAATACTAT CTTTGTTGTAAACATACTATCTTCGTTTAAAACATACTATCTTTTTAAAA CAATCCTATCTTTGTTGTAAACATACTATCTTCGTTTAAAACATACTATC TTTTTAAAACAATCCTATCTTTGTTGTAAACATACTATCTTCGTTTAAAA CATACTATCTTTTTAAAACAATCCTATCTTTGTTGTAAACATACTATCTT CGTTTAAAACATACTATCTTTTTAAAACAATCCTATCTTTGTTGTAAACA TACTATCTTCGTTTAAAACATACTATCTTTTTAAAACAATCCTATCTTTG TTGTAAACATACTATCTTCGTTTAAAACATACTATCTTTTTAAAACAATC CTATCTTTGTTGTAAACATACTATCTTCGTTTAAAACATACTATCTTTTT AAAACAATCCTATCTTTGTTGTAAACATACTATCTTCGTTTAAAACATAC TATCTTTTTAAAACAATCCTATCTTTGTTGTAAACATACTATCTTCGTTT AAAACATACTATCTTTTTAAAACAATCCTATCTTTGTTGTAAACATACTA TCTTCGTTTAAAACATACTATCTTTTTAAAACAATCCTATCTTTGTTGTA AACATACTATCTTCGTTTAAAACATACTATCTTTTTAAAACAATCCTATC TTTGTTGTAAACATACTATCTTCGTTTAAAACATACTATCTTTTTAAAAC AATCCTATCTTTGTTGTAAACATACTATCTTCGTTTAAAACATACTATCT TTTTAAAACAATCCTATCTTTGTTGTAAACATACTATCTTCGTTTAAAAC ATACTATCTTTTTAAAACAATCCTATCTTTGTTGTAAACATACTATCTTC GTTTAAAACATACTATCTTTTTAAAACAATCCTATCTTTGTTGTAAACAT ACTATCTTCGTTTAAAACATACTATCTTTTTAAAACAATCCTATCTTTGT TGTAAACATACTATCTTCGTTTAAAACATACTATCTTTTTAAAACAATCC TATCTTTGTTGTAAACATACTATCTTCGTTTAAAACATACTATCTTTTTA AAACAATCCTATCTTTGTTGTAAACATACTATCTTCGTTTAAAACATACT ATCTTTTTAAAACAATCCTATCTTTGTTGTAAACATACTATCTTCGTTTA AAACATACTATCTTCGTTTAAAAAATAGTATTATTTTTTAAAGATACTAT GTTTTAAACGAAAATAGTATTTTTTAAGCAAAAAATAGTATGTTTTAAAA AAGATACTATGTTTTAAACGAAGATAGTATGTTTTTAAAAAAAGATAGTA TGTTTTAAACGAAGATAGTATTGTTTTAAGAAGATAGTATTTATTTCCGC TTTGGCGCGCCATACATTATAACTATGTAAAAGGTCAATGACTTTAAAGA TCAAATAAATAGTGTTATGCATATTAAATCAATTTATTAGAATGAAAAGT TAGTTGGTTCTAAGAAAAAAAATCACTAAGTAAAGCTTTTTGTAATTAAT AGCAACACCTGGCAACACATTTCTTTCAGTGAATTAAAGAGAGAAAAAAT ATAAAGACAGAATGTGGGGCAACACTAACAGCCAGAGAGATGATTTTTTT CTTCCTAATTTTTTTTATTAGAAATCATGAAAAGGACCAAAAAAAAATTT TTCCCAGCCGCCCGCATGACTTTTTATTTCGTCACCCGGTGGACCGGAAA TAAATTTTTTTTAGGGTTGGCCTTGTTTTTCTTGAAAATTCAAAAACTTT CAATCATTTGGGAATTGCCGGAGATGGATAGTTCCTTTTTCCAAAATACC TGAGATATATTACATTTTTCAACAAATCCAAAAAAATTCGGAAATACAGG AGATGTGTGAGAATTTTCGTTGGTTTATTGCATCAAGAATTGTATTACTC TCAAGTAGTATGATTTCTTTAAAGCTTTAAGTTTGCTAAGGATCTAGAAA CAGTCTTGAAATACTTACCTAGTATTTTTCAATCAAATCAATAGTTTGGA AAGAGTTTATCAAAGGCAATGATTGCTAAAGCAGGTTTTATTGTATTTGG ATATTTTAGGTGATGAAAATGACTAATTTGATCAATTTTGACCAAATTTC AATTTTCCGGGGGTAAAAAGTTGAAATTTTCCTATTTTCCGACCCTTAGT GGGACTGAAATTTGATTTTCTGATTTTTCCGACCCTTAGCGGGACTTTGG AAATCCCAAAAAGGTACCCTTAAGGGCGGCACATACCGTACCCTCCATTT TCCTAAGTACCCCCTCCCCCCGTATATTCCAAGTCTTCTTGGAGCAAATT TGAGCTTTTAAATCCTGAGATCCTAAGGCCGTAACGTAAGTCTTTTAGTC TCGTGTTAAAAATTTACTTTCTAACTGTAGTTTAAGACACTTAAAAATCA TTTGTATGTAGTGTTTAAAATTTCGCCGGGAANTGTAGTGGTTATCACCC TTGAATTTCGTCTGGGAGGTCAAGGTTCGATCCTGGTGCTATGATTCACT TTTACCTTCGCCCAGGTCAACCCATGCCTTGTGAGGGGAACTGACTACCA TTACTCTAATACAAGAGTATGGGGAGTATACCAGGCGTAGCATGTGGTGT AGTGACGATTGCTCTCTGAAAAAGTTCTAGTGATAATCCTTAGCTTTAGA ATGTTATATTCTTTTATCTTTCTAGATGCCTGAGGTTTGCTTGAAAGACT GTCAAGCATGGAGGGATGTTGGCCTCACGATGACTACTACAAGTAATGAG GCATGTAAATTATTTGATGATGTGATCACCCAATATATCACATGGACGGA GAGTCCTGATGGTATGGAAAATACCGTCGTAAAGCTACTTGAATCTGACT CTAATTTCATGATGGGTCAAGCTTTATCGATTGGGTTGGATATGATGGGA ACTGGTCGTGCTCTTCATTTGGATAAGGAGTTAGCGGAACAAATTAATAA ATTTGAAAGTGATTTCAATAAGTCTGAGATTACACCACGAGAAAAATTAC ACTGCCAAAGTGTGGTGTATTTTGCTAAAGGTGAATATACGAAAGCCTGT GAATCTTGGGAAGAGATTTTGAAAGTCNGCCAAAGTGTGGTGTATTTTGC TAAAGGTGAATATACGAAAGCCTGTGAATCTTGGGAAGAGATTTTGAAAG TCTATCCTAAGGACAGTTTAGCTATCAAGTTTGCGCATGATAGTTATTTT TATCTGGGTGATTCGGTCAAGATTCGGGATAGTGTGGACAGAGTTTTACC ATACTGGAAATCGAGTGATCCCTTATATGGTTATCTTAAAGGAATGCTCG CCTTTGGTTTAGAAGAAACATACCGATACGAAGAAGCTCAAAAAAGTAGC GAAGAAGCTCTCTCGTTAAACCCAACGGACTGTTGGGCTACGCATGCTAA AGCTCATTGTTTTGAAATGACAGGACGTTTTAATCAAGGAATCGAGTTCT TAAAAGATACTGAGAATGATTGGGCTAAAGGTCGAATGCTAGCCTGTCAT AATTATTGGCATTGGGCGCTTTATCATATCGAACGAGGAGATTATGAAAC AGCATTAGGAATCTATGATCATCAAGTTGAAGAGAGAAGTAAGAGCTCGG GGGCTATGCTGGATATGGTCGACGCGGCTTCCTTACTACAAAGATTCGAA ATGCAAGGAGTCAACGTTGGTGATCGTTGGAAAGAAATTTACGAGTTGGC TTTACCACATATTAATGATCATATCACTGTGTTTAATGATTTTCATATGA CGATGGCTTTCCTAGGGTGTGGGAAAACGGATGTTGCGTCCCGTTATATG AAATCGCTGAGAGATTACTGCGCTCATCATTCTAGCTACAGTCGAGATTT GTTTCATAAAATGGGTGTTGATCTTTGCGATGGCTTAATAGCATTTTCTG AGGACCGATTTGATGCAGCAGTTCAGTTGTGGTACCCTTTGAAAGATGAC GTCATCGGTATGGGTGGAAGTCATGCACAACGAGATGTTTTTGATCAACT TTTGTTAAACGCTTGTATCGATTCCCCGAAAAATGAAGACCGTGATTTAG CGCAACAAATGTTGAGTGAACGCAAAAAGAAGAGAGAAAATTCTCCACTC ACGGACAGGTTAATGCAGAAACTGCTTGCGAAACATTAGTGATACGTTGA TCAGCTAACATAATATACACTGAAATGTACTGGTCGTGTTAAAGACAACG GAGAGCATATTTCACTTCTTTTACTTCTTCGATTTTAGTTTCATTCATGA GACACCCATGTCTTATTGAGTCAGCTCAGTTGTTGTGAAATCAATCGGGG TGGCTATGAAAAAATAAATTTCACCGGGTTTGAATTTGAATCTTAGCTCA CTGAGGGTGAGAACTTTTAGCTGTTTCACCAGGGTGGGGTAAATGCTTTC ATTTTAAAGCATTCGAGAGTTGGTTTACCTAGAATTCACTTACTATTAAT ATGTACTTTTTTGTTTTTACCAGGTTGCCCTAATTTATGCAATTTTTGAC CGGGGTAGGACAATAAATATTCAAGTTTTGATCCGGGGGGGGGTAGAGAA CTTTACCGCGGGTTACACGTCTTTTTTTTTTTAAGAAACACACTTTTAAG AAACATGAGGCTTAGAATGCCTAAAAACTAAGAAACATCTAAGAAACATG CTGAGGCTGA

Coding sequence (CDS) from alignment at scaffold_416:18140..24199-

>TCONS_00064470 ID=TCONS_00064470|Name=TCONS_00064470|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_416:18140..24199- (Clytia hemisphaerica)
ATGCCTGAGGTTTGCTTGAAAGACTGTCAAGCATGGAGGGATGTTGGCCT
CACGATGACTACTACAAGTAATGAGGCATGTAAATTATTTGATGATGTGA
TCACCCAATATATCACATGGACGGAGAGTCCTGATGGTATGGAAAATACC
GTCGTAAAGCTACTTGAATCTGACTCTAATTTCATGATGGGTCAAGCTTT
ATCGATTGGGTTGGATATGATGGGAACTGGTCGTGCTCTTCATTTGGATA
AGGAGTTAGCGGAACAAATTAATAAATTTGAAAGTGATTTCAATAAGTCT
GAGATTACACCACGAGAAAAATTACACTGCCAAAGTGTGGTGTATTTTGC
TAAAGGTGAATATACGAAAGCCTGTGAATCTTGGGAAGAGATTTTGAAAG
TCNGCCAAAGTGTGGTGTATTTTGCTAAAGGTGAATATACGAAAGCCTGT
GAATCTTGGGAAGAGATTTTGAAAGTCTATCCTAAGGACAGTTTAGCTAT
CAAGTTTGCGCATGATAGTTATTTTTATCTGGGTGATTCGGTCAAGATTC
GGGATAGTGTGGACAGAGTTTTACCATACTGGAAATCGAGTGATCCCTTA
TATGGTTATCTTAAAGGAATGCTCGCCTTTGGTTTAGAAGAAACATACCG
ATACGAAGAAGCTCAAAAAAGTAGCGAAGAAGCTCTCTCGTTAAACCCAA
CGGACTGTTGGGCTACGCATGCTAAAGCTCATTGTTTTGAAATGACAGGA
CGTTTTAATCAAGGAATCGAGTTCTTAAAAGATACTGAGAATGATTGGGC
TAAAGGTCGAATGCTAGCCTGTCATAATTATTGGCATTGGGCGCTTTATC
ATATCGAACGAGGAGATTATGAAACAGCATTAGGAATCTATGATCATCAA
GTTGAAGAGAGAAGTAAGAGCTCGGGGGCTATGCTGGATATGGTCGACGC
GGCTTCCTTACTACAAAGATTCGAAATGCAAGGAGTCAACGTTGGTGATC
GTTGGAAAGAAATTTACGAGTTGGCTTTACCACATATTAATGATCATATC
ACTGTGTTTAATGATTTTCATATGACGATGGCTTTCCTAGGGTGTGGGAA
AACGGATGTTGCGTCCCGTTATATGAAATCGCTGAGAGATTACTGCGCTC
ATCATTCTAGCTACAGTCGAGATTTGTTTCATAAAATGGGTGTTGATCTT
TGCGATGGCTTAATAGCATTTTCTGAGGACCGATTTGATGCAGCAGTTCA
GTTGTGGTACCCTTTGAAAGATGACGTCATCGGTATGGGTGGAAGTCATG
CACAACGAGATGTTTTTGATCAACTTTTGTTAAACGCTTGTATCGATTCC
CCGAAAAATGAAGACCGTGATTTAGCGCAACAAATGTTGAGTGAACGCAA
AAAGAAGAGAGAAAATTCTCCACTCACGGACAGGTTAATGCAGAAACTGC
TTGCGAAACATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040432XLOC_040432Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064470-proteinTCONS_00064470-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064470-exon-scaffold_416-1575043694:24156..24199TCONS_00064470-exon-scaffold_416-1575043694:24156..24199Clytia hemisphaericaexon
TCONS_00064470-exon-scaffold_416-1575043694:18140..20124TCONS_00064470-exon-scaffold_416-1575043694:18140..20124Clytia hemisphaericaexon
TCONS_00064470-exon-scaffold_416-1510915933:24156..24199TCONS_00064470-exon-scaffold_416-1510915933:24156..24199Clytia hemisphaericaexon
TCONS_00064470-exon-scaffold_416-1510915933:18140..20124TCONS_00064470-exon-scaffold_416-1510915933:18140..20124Clytia hemisphaericaexon
TCONS_00064470-exon-scaffold_416-1491911889:24156..24199TCONS_00064470-exon-scaffold_416-1491911889:24156..24199Clytia hemisphaericaexon
TCONS_00064470-exon-scaffold_416-1491911889:18140..20124TCONS_00064470-exon-scaffold_416-1491911889:18140..20124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_416supercontigscaffold_416:18140..24199 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.61791 9.55927 6.8374 8.19797 10.4735 2.42016 3.25057 2.98418 6.39015 6.64419 4.81549 4.22912 6.36565 6.27444 6.36868 9.21254 8.5294 6.5644 4.19471 3.8413 4.31826 6.35344 6.59089 7.74238 0.510886 2.13047 5.85878 4.4594 6.68589 6.62452
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR033891TTC38
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00064470 vs. Swiss-Prot (Human)
Match: TTC38 (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 4.377e-136
Identity = 202/485 (41.65%), Postives = 296/485 (61.03%), Query Frame = 3
Query:   60 LKDCQAWRDVGLTMTTTSNEACKLFDDVITQYITWT--ESPDGMENTVVKLLESDSNFMMGQALSIGLDMMGTGRALHLDKELAEQINKFESDFNKSEITPREKLHCQSVVYFAKGEYTKACESWEEILKVXQSVVYFAKGEYTKACESWEEILKVYPKDSLAIKFAHDSYFYLGDSVKIRDSVDRVLPYWKSSDPLYGYLKGMLAFGLEETYRYEEAQKSSEEALSLNPTDCWATHAKAHCFEMTGRFNQGIEFLKDTENDWAKGRMLACHNYWHWALYHIERGDYETALGIYDHQVEERSKSSGAMLDMVDAASLLQRFEMQGVNVGDRWKEIYELALPHINDHITVFNDFHMTMAFLGCGKTDVASRYMKSLRDYCAHHSSYSRDLFHK-MGVDLCDGLIAFSEDRFDAAVQLWYPLKDDVIGMGGSHAQRDVFDQLLLNACIDSPKNEDRDLAQQMLSERKKKRENSPLTDRLMQKLLAKH 1505
            L+DCQAW+D  L ++TTSNEACKLFD  +TQY+ WT  +S  G+E  + KL  +D  F+MG A++ GL ++GTG ++ LDKEL   +           +T RE+LH  +V  FA G + K                         ACE WE+IL+ +P D LA+KF+HD+YFYLG   ++RDSV R+ P+W    PL  Y+KG+ +FGL ET  Y++A+K ++EALS+NPTD W+ H  AH  EM      G+EF++ +E  W    MLACHNYWHWALY IE+G+YE AL IYD  +    +++ AMLD+VD+ S+L R +M+GV+VG RW+++  +A  H  DHI +FND H  MA LG          + +LRD         + L  + +G+ LC  L+   +   D  ++L  P++  ++ +GGS+AQRDVF+QLL++A ++   +  +++A+ +L ER   + NSPLT+RL++K    H
Sbjct:    7 LRDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVEISRTQPLTRREQLHVSAVETFANGNFPK-------------------------ACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHSETFWKDSDMLACHNYWHWALYLIEKGEYEAALTIYDTHILPSLQANDAMLDVVDSCSMLYRLQMEGVSVGQRWQDVLPVARKHSRDHILLFNDAHFLMASLGAHDPQTTQELLTTLRDASESPGENCQHLLARDVGLPLCQALVEAEDGNPDRVLELLLPIRYRIVQLGGSNAQRDVFNQLLIHAALNCTSSVHKNVARSLLMERDALKPNSPLTERLIRKAATVH 466          
The following BLAST results are available for this feature:
BLAST of TCONS_00064470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC384.377e-13641.65Tetratricopeptide repeat protein 38 OS=Homo sapien... [more]
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