TCONS_00064482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064482
Unique NameTCONS_00064482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064482 ID=TCONS_00064482|Name=TCONS_00064482|organism=Clytia hemisphaerica|type=transcript|length=1234bp
TTATAGATCTTAGAAACGAGGTTAAAACACATTTGGTGTGCAATTAAAAA
TTGATAGATGGCCTCGTTTTCATATTGCAGTTTCGATGAATATCTAACCC
ACGCAAATTGAGCGAAATGATAAAGGTATAAATAGGAGGAGATAGAGAGC
ATATACATCAATTTGTAGAGGTGTGTCGGTCGATATTGGTGCATAAATTT
TCCAATCTATTGCAGCCTAGTTTTATCAAGGAGACAGCAGTTCAATATGC
ATAAACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCA
CTTGCAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGG
AAAACATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTA
GTATCACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAAC
CCAAAGACCTGTGAAACTAAGTGTGTTTGTCCAACAATCTGCACCAAAGA
ATACAAGCCAGTATGTGGATCTGATGGTAAAACCTATGGAAACGCCTGCG
AATTGAATGTAGCAAGCTGTAAAAGCCAGGAAAGCGGTGGTAAACCCATC
TCCAAGAAAAGTGATGGCAAATGTCCTTGCCAGAATCTTTGTCCAACAAC
TCTGTGTGGACCTCGAAGAAAATGCGTCTGGAACCAGAAGACTTGCAAAT
CCTCATGTCCATGTAGAAAAAGCTGTCGTGGAGTACGATGCAAGAATAAG
GCTAGATGCTTCCAAGATAAGAAAACTTGCAGAAGATTCTGCAGATGTTC
GAGAGCTTGTccaaaaatttacagaccagtgtGTGGATCAAACGGTGTAA
CCTACGCCAACCAATGTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGA
AAGATCACCAAGAAGAGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCG
CAATGTCCGATGTGCAAATGGTGCCCGGTGCTTTCACAATCCACGAACCT
GCAAAACTAAATGCGCGTGTTCAAAAGCTTGTCCCAAGATCTTGAAGCCA
GTTTGCGGTACCGATGGAGTGACTTATGACAATGATTGCTTATTGAGATA
TGCCACGTGTAAGAGCAAAggaaaaatccagaaaaagaaAGATGGCAAAT
GTTGTTCAGTTGATTGCACCACAGCTAAATGTTCCAAAGGCGCCAGATGT
TTCCATGATCCTTTAAAATGTGTCACCAAATGCG
Run BLAST on NCBI

transcript from alignment at scaffold_418:89518..91822+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064482 ID=TCONS_00064482|Name=TCONS_00064482|organism=Clytia hemisphaerica|type=transcript|length=2305bp|location=Sequence derived from alignment at scaffold_418:89518..91822+ (Clytia hemisphaerica)
TTATAGATCTTAGAAACGAGGTTAAAACACATTTGGTGTGCAATTAAAAA
TTGATAGATGGCCTCGTTTTCATATTGCAGTTTCGATGAATATCTAACCC
ACGCAAATTGAGCGAAATGATAAAGGTATAAATAGGAGGAGATAGAGAGC
ATATACATCAATTTGTAGAGGTGTGTCGGTCGATATTGGTGCATAAATTT
TCCAATCTATTGCAGCCTAGTTTTATCAAGGAGACAGCAGTTCAATATGC
ATAAACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCA
CTTGCAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGG
AAAACATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTA
GTATCACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAAC
CCAAAGACCTGTGAAACTAAGTGTGGTAAGTTTTTTAGTTCAACTTCTTG
AATTCATTTATCCATATTTGGCCCTTGTGATTTTTCCGCGCTTTATTCGC
GTTCTCTCGTACAAAAAAACCAGCTACAATCTACTTTCGAATAAGCCAAA
GAAATTTAACTCCGGATTTTGTTATATTTAATCCTTAGTTTAATCTCTCG
TTACACTTCTgtcaatacaaaataaacaaatcgaGTGAAGAAGTGATCGA
GTCGAGCCGGTTGGTTATGCAGAACAAAAGTATATGTTTTTATCGAATAT
TAGAcgttataaaaaaatgtgaatCCCTTTCTCATTCAGTATCCCAATTG
AATCATCCCATAAATGAAACAATCAATCTCTTTCTTACAGTTTGTCCAAC
AATCTGCACCAAAGAATACAAGCCAGTATGTGGATCTGATGGTAAAACCT
ATGGAAACGCCTGCGAATTGAATGTAGCAAGCTGTAAAAGCCAGGAAAGC
GGTGGTAAACCCATCTCCAAGAAAAGTGATGGCAAATGTCCTTGCCAGAA
TCTTTGTCCAACAACTCTGTGTGGACCTCGAAGAAAATGCGTCTGGAACC
AGAAGACTTGCAAATCCTCATGTCCATGTAGAAAAAGCTGTCGTGGAGTA
CGATGCAAGAATAAGGCTAGATGCTTCCAAGATAAGAAAACTTGCAGAAG
ATTCTGCAGTACGTATctctaatttgaaaaaaaataccataAACAGTAGG
TCAAAACGTTAAGGGTTATAGACTATATTAAAACTCCAAGGAACTCTTTT
ACATACTTAGAGTACTTTAAAATCCAATGCTCACACAAACATATACAAAA
ATTAATAATGAATTTTGGTTCTTTTAAGGATGTTCGAGAGCTTGTccaaa
aatttacagaccagtgtGTGGATCAAACGGTGTAACCTACGCCAACCAAT
GTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGAAAGATCACCAAGAAG
AGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCGCAATGTCCGATGTGC
AAATGGTGCCCGGTGCTTTCACAATCCACGAACCTGCAAAACTAAATGCG
GTAAGGTTCTAATCAAAACTTTCCCTCGATTTCATGGAAATAGTTGGCTT
AGTTTTTTGGGAACATACGTATAACGAAATGATTTCAGCTTGTTGAAAGC
ACATCGGCCTGTTTCAGAAAATGCCCGTACatggggatggaggatatata
ttgtccggggggtagcgaaaaatcatcaaaatttgctttgtccggggtgt
aaatttgctctgtccggggggtcaactgatgcttgtccggcgGTAAAACC
CGTTATCCGGGgagccaaaagtcactttttcctgggggtaaatcactgaa
aatccTCCACCcgcatattcaatttttttctggaaaagtctaTTTTGACC
CGGTGATATTTAGACAGTAAATACGAAGATTGTCATTATGGAAAGTCGGT
CatatgattcaatttttcagaTATTATTCCAAGCTTTTAAGTAACCAACA
TCTAGAACAAAAAGACTTTCCTTGGCGTATGGCTTTCTATTGGGCATTTG
CAAGCATTTTTATGAATTCTGTTCATTCCCCTACAGCGTGTTCAAAAGCT
TGTCCCAAGATCTTGAAGCCAGTTTGCGGTACCGATGGAGTGACTTATGA
CAATGATTGCTTATTGAGATATGCCACGTGTAAGAGCAAAggaaaaatcc
agaaaaagaaAGATGGCAAATGTTGTTCAGTTGATTGCACCACAGCTAAA
TGTTCCAAAGGCGCCAGATGTTTCCATGATCCTTTAAAATGTGTCACCAA
ATGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040444XLOC_040444Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064482-exon-scaffold_418-1491911889:89518..89992TCONS_00064482-exon-scaffold_418-1491911889:89518..89992Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1510915933:89518..89992TCONS_00064482-exon-scaffold_418-1510915933:89518..89992Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1575043694:89518..89992TCONS_00064482-exon-scaffold_418-1575043694:89518..89992Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1491911889:90358..90675TCONS_00064482-exon-scaffold_418-1491911889:90358..90675Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1510915933:90358..90675TCONS_00064482-exon-scaffold_418-1510915933:90358..90675Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1575043694:90358..90675TCONS_00064482-exon-scaffold_418-1575043694:90358..90675Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1491911889:90846..91067TCONS_00064482-exon-scaffold_418-1491911889:90846..91067Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1510915933:90846..91067TCONS_00064482-exon-scaffold_418-1510915933:90846..91067Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1575043694:90846..91067TCONS_00064482-exon-scaffold_418-1575043694:90846..91067Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1491911889:91604..91822TCONS_00064482-exon-scaffold_418-1491911889:91604..91822Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1510915933:91604..91822TCONS_00064482-exon-scaffold_418-1510915933:91604..91822Clytia hemisphaericaexon
TCONS_00064482-exon-scaffold_418-1575043694:91604..91822TCONS_00064482-exon-scaffold_418-1575043694:91604..91822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:89518..91822 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173062	0	0.19595	0.460095	2.52055	1.84423	3.29298	3.95771	34.3934	37.6012	31.6286	42.0883	364.697	437.932	315.425	216.297	5.93164	19.2441	30.5448	46.0216	5.0664	3.43967	8.75606	13.3307	47.1842	85.7855	0.126396	1.4933	7.01729	3.49647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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