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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064482 ID=TCONS_00064482|Name=TCONS_00064482|organism=Clytia hemisphaerica|type=transcript|length=1234bp
TTATAGATCTTAGAAACGAGGTTAAAACACATTTGGTGTGCAATTAAAAA
TTGATAGATGGCCTCGTTTTCATATTGCAGTTTCGATGAATATCTAACCC
ACGCAAATTGAGCGAAATGATAAAGGTATAAATAGGAGGAGATAGAGAGC
ATATACATCAATTTGTAGAGGTGTGTCGGTCGATATTGGTGCATAAATTT
TCCAATCTATTGCAGCCTAGTTTTATCAAGGAGACAGCAGTTCAATATGC
ATAAACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCA
CTTGCAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGG
AAAACATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTA
GTATCACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAAC
CCAAAGACCTGTGAAACTAAGTGTGTTTGTCCAACAATCTGCACCAAAGA
ATACAAGCCAGTATGTGGATCTGATGGTAAAACCTATGGAAACGCCTGCG
AATTGAATGTAGCAAGCTGTAAAAGCCAGGAAAGCGGTGGTAAACCCATC
TCCAAGAAAAGTGATGGCAAATGTCCTTGCCAGAATCTTTGTCCAACAAC
TCTGTGTGGACCTCGAAGAAAATGCGTCTGGAACCAGAAGACTTGCAAAT
CCTCATGTCCATGTAGAAAAAGCTGTCGTGGAGTACGATGCAAGAATAAG
GCTAGATGCTTCCAAGATAAGAAAACTTGCAGAAGATTCTGCAGATGTTC
GAGAGCTTGTccaaaaatttacagaccagtgtGTGGATCAAACGGTGTAA
CCTACGCCAACCAATGTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGA
AAGATCACCAAGAAGAGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCG
CAATGTCCGATGTGCAAATGGTGCCCGGTGCTTTCACAATCCACGAACCT
GCAAAACTAAATGCGCGTGTTCAAAAGCTTGTCCCAAGATCTTGAAGCCA
GTTTGCGGTACCGATGGAGTGACTTATGACAATGATTGCTTATTGAGATA
TGCCACGTGTAAGAGCAAAggaaaaatccagaaaaagaaAGATGGCAAAT
GTTGTTCAGTTGATTGCACCACAGCTAAATGTTCCAAAGGCGCCAGATGT
TTCCATGATCCTTTAAAATGTGTCACCAAATGCG Run BLAST on NCBI transcript from alignment at scaffold_418:89518..91822+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064482 ID=TCONS_00064482|Name=TCONS_00064482|organism=Clytia hemisphaerica|type=transcript|length=2305bp|location=Sequence derived from alignment at scaffold_418:89518..91822+ (Clytia hemisphaerica)
TTATAGATCTTAGAAACGAGGTTAAAACACATTTGGTGTGCAATTAAAAA
TTGATAGATGGCCTCGTTTTCATATTGCAGTTTCGATGAATATCTAACCC
ACGCAAATTGAGCGAAATGATAAAGGTATAAATAGGAGGAGATAGAGAGC
ATATACATCAATTTGTAGAGGTGTGTCGGTCGATATTGGTGCATAAATTT
TCCAATCTATTGCAGCCTAGTTTTATCAAGGAGACAGCAGTTCAATATGC
ATAAACTATTTTTGCTCAGTTTGGGCTTGCTTTGTGTCTTGCAGTTGTCA
CTTGCAAAACACTGTACCAAAAGTTGTAGATACGTTAATTGTGGCAAAGG
AAAACATTGTGTTGTAGATAAGAAGAAATGTACAACTGCTTGTGTTTGTA
GTATCACGTGTGCCAATGTGTTTTGTGCATATGGAAATTGTCAACATAAC
CCAAAGACCTGTGAAACTAAGTGTGGTAAGTTTTTTAGTTCAACTTCTTG
AATTCATTTATCCATATTTGGCCCTTGTGATTTTTCCGCGCTTTATTCGC
GTTCTCTCGTACAAAAAAACCAGCTACAATCTACTTTCGAATAAGCCAAA
GAAATTTAACTCCGGATTTTGTTATATTTAATCCTTAGTTTAATCTCTCG
TTACACTTCTgtcaatacaaaataaacaaatcgaGTGAAGAAGTGATCGA
GTCGAGCCGGTTGGTTATGCAGAACAAAAGTATATGTTTTTATCGAATAT
TAGAcgttataaaaaaatgtgaatCCCTTTCTCATTCAGTATCCCAATTG
AATCATCCCATAAATGAAACAATCAATCTCTTTCTTACAGTTTGTCCAAC
AATCTGCACCAAAGAATACAAGCCAGTATGTGGATCTGATGGTAAAACCT
ATGGAAACGCCTGCGAATTGAATGTAGCAAGCTGTAAAAGCCAGGAAAGC
GGTGGTAAACCCATCTCCAAGAAAAGTGATGGCAAATGTCCTTGCCAGAA
TCTTTGTCCAACAACTCTGTGTGGACCTCGAAGAAAATGCGTCTGGAACC
AGAAGACTTGCAAATCCTCATGTCCATGTAGAAAAAGCTGTCGTGGAGTA
CGATGCAAGAATAAGGCTAGATGCTTCCAAGATAAGAAAACTTGCAGAAG
ATTCTGCAGTACGTATctctaatttgaaaaaaaataccataAACAGTAGG
TCAAAACGTTAAGGGTTATAGACTATATTAAAACTCCAAGGAACTCTTTT
ACATACTTAGAGTACTTTAAAATCCAATGCTCACACAAACATATACAAAA
ATTAATAATGAATTTTGGTTCTTTTAAGGATGTTCGAGAGCTTGTccaaa
aatttacagaccagtgtGTGGATCAAACGGTGTAACCTACGCCAACCAAT
GTCTCCTCAATTACGCCACTTGCCAAAGCAAAGGAAAGATCACCAAGAAG
AGAAACGGAAGATGTCCGTGCAAAAAGACTTGCCGCAATGTCCGATGTGC
AAATGGTGCCCGGTGCTTTCACAATCCACGAACCTGCAAAACTAAATGCG
GTAAGGTTCTAATCAAAACTTTCCCTCGATTTCATGGAAATAGTTGGCTT
AGTTTTTTGGGAACATACGTATAACGAAATGATTTCAGCTTGTTGAAAGC
ACATCGGCCTGTTTCAGAAAATGCCCGTACatggggatggaggatatata
ttgtccggggggtagcgaaaaatcatcaaaatttgctttgtccggggtgt
aaatttgctctgtccggggggtcaactgatgcttgtccggcgGTAAAACC
CGTTATCCGGGgagccaaaagtcactttttcctgggggtaaatcactgaa
aatccTCCACCcgcatattcaatttttttctggaaaagtctaTTTTGACC
CGGTGATATTTAGACAGTAAATACGAAGATTGTCATTATGGAAAGTCGGT
CatatgattcaatttttcagaTATTATTCCAAGCTTTTAAGTAACCAACA
TCTAGAACAAAAAGACTTTCCTTGGCGTATGGCTTTCTATTGGGCATTTG
CAAGCATTTTTATGAATTCTGTTCATTCCCCTACAGCGTGTTCAAAAGCT
TGTCCCAAGATCTTGAAGCCAGTTTGCGGTACCGATGGAGTGACTTATGA
CAATGATTGCTTATTGAGATATGCCACGTGTAAGAGCAAAggaaaaatcc
agaaaaagaaAGATGGCAAATGTTGTTCAGTTGATTGCACCACAGCTAAA
TGTTCCAAAGGCGCCAGATGTTTCCATGATCCTTTAAAATGTGTCACCAA
ATGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064482-exon-scaffold_418-1491911889:89518..89992 | TCONS_00064482-exon-scaffold_418-1491911889:89518..89992 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1510915933:89518..89992 | TCONS_00064482-exon-scaffold_418-1510915933:89518..89992 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1575043694:89518..89992 | TCONS_00064482-exon-scaffold_418-1575043694:89518..89992 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1491911889:90358..90675 | TCONS_00064482-exon-scaffold_418-1491911889:90358..90675 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1510915933:90358..90675 | TCONS_00064482-exon-scaffold_418-1510915933:90358..90675 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1575043694:90358..90675 | TCONS_00064482-exon-scaffold_418-1575043694:90358..90675 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1491911889:90846..91067 | TCONS_00064482-exon-scaffold_418-1491911889:90846..91067 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1510915933:90846..91067 | TCONS_00064482-exon-scaffold_418-1510915933:90846..91067 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1575043694:90846..91067 | TCONS_00064482-exon-scaffold_418-1575043694:90846..91067 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1491911889:91604..91822 | TCONS_00064482-exon-scaffold_418-1491911889:91604..91822 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1510915933:91604..91822 | TCONS_00064482-exon-scaffold_418-1510915933:91604..91822 | Clytia hemisphaerica | exon |
| TCONS_00064482-exon-scaffold_418-1575043694:91604..91822 | TCONS_00064482-exon-scaffold_418-1575043694:91604..91822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:89518..91822 + |
Blast
The following BLAST results are available for this feature:
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