TCONS_00064486 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064486
Unique Name	TCONS_00064486
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1519

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_418:105418..112058+

transcript sequence

>TCONS_00064486 ID=TCONS_00064486|Name=TCONS_00064486|organism=Clytia hemisphaerica|type=transcript|length=1519bp
TCAGGGACAGAAGAATTTTTCATAGCAACAATGATTATTCTAGTTCTCAT
CTCAGGATTTGGTGCTATGTTGCAGGGTGCATTGTTCGGGCTTGCCGGGA
TGATGCCACCACGATATATTCAAGCAGTGATGGCTGGACAAGGTCTTGGA
GGATTCTTTGTTTGTATTGTTAGTATCTTGTCTTCTGTGGTTCAAAGATT
ACGGACAGTTCTTTTGGATATTTTTGTACTGGTATATTTGCAATGATCAT
CTCACTGCTTGCCTATGTTTACCTTGAACGACTGCCCATCGTGAAATATT
ACACCAACATTACGAAAGGAGTTTGTTTCTGCACTTGTGAATGTGAAAAC
GAATGTCATCTAAACAGCACTATAACAAATATAACAAATAACGAAGACAC
CAAGGAGGATGATGACNAATGTCATTTAAACAGCACTATAACAAATAAAG
AAGACACCAAAGAGGATGATAAACAAGAAAAAGAAGGCGAGActaccaac
aacaacaacaaggatATCAATTACCTACGCatcattaagaaaatcaaaTG
TATGATGTTGACAGTCTACATCACTTTCCTGGTCACTCTCTCTGTTTTCC
CTTCCCTGACCGCTCGCATCGAATCCACGTGGGCTGATCAGAACAAATGG
ACTgAATCGCTCTTCGTGCTGGTTGGATGTTTCTTAACTTACAATTTATT
TGATTATATTGGAAAATCAGCGGtcagtttctttcaaaagCCTACCAATG
AAAGACCTTGGTTGTTAGTCGTCCTGGCCGCACTAAGAGTATTATTCATt
ccattattcttattttgcaACGTGCAACCACGGATATCAAACATCCCTGT
AGCGTTCAGTCACGATTCATTACCGATCATTTTCATGGCTTTATTCGCGT
TCACGGGAGGCTATTTAGGAAGCCTTCCTTTTATTTACGGACCAAGcaTG
GTGGAACCGCACGAACAGGAAATCACCGCCACCCTCATCGTTTTCTCATT
GGTGGCCGGATTGACTAGTGGCGCCGCTCTCTCGTTTGCCATTGCTCCAA
ACGTTTAGCTCTCTGTTACATTTTTATAGCATTTTTCTTATTTACTTCAC
TAAAAAGATAGAGATAttatttttgttcatatttcaaaattctgaaTCGT
AAATTATACTGGATAAAAGACGTCAGTCAACTTTTAATCTCCGGTCAGAT
TCTGATTACTCCACGCATGACACTCCGTAAGAGAGTCTGCCCAGGCGGGC
CATATTAGATGAGCTTTTGAATGTGATTGGCTGAAGCGAAACAATCGCAC
TAAAACAGACGCCAATCTTTAACACAAACATAAACATTAAAACGTAGTCA
CTTTCACAAGCAAGATCAACGGGGTTTTGATTGTCTAAAATGAGCAACTG
ATATAAATCACATTCGCTTTTAGAATAAAACAGTGTGCGCATAATGGATG
ATCTATTATGAGATTAGCTATATTTTGACTTTATAGAAACTTTATGAAAA
TAATGACATTATGCTTGTG

Run BLAST on NCBI

transcript from alignment at scaffold_418:105418..112058+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064486 ID=TCONS_00064486|Name=TCONS_00064486|organism=Clytia hemisphaerica|type=transcript|length=6641bp|location=Sequence derived from alignment at scaffold_418:105418..112058+ (Clytia hemisphaerica)
TCAGGGACAGAAGAATTTTTCATAGCAACAATGATTATTCTAGTTCTCAT
CTCAGGTAAGTcaatactttaagggcagaaactttcgcgggcagaaactt
tcgcgagaccGAAAAGTCGTGAAATTTCCCGGATttaaatttcgtgattt
ttactttttgaagaaaatttacggaagaaaatttcgcggttttttgtgaa
tgttaaattttaataactttcgcgagtggctagggaaagtgaataaagat
tatttcaaatctcatttttttcttcaatcgaaagagtgatatgctaataa
atgaaaaataaactatttgcaCTTCTTCCTTCCATTCCGAATCCTAGTCA
CTGCGCTAATATCGACTCTCCTCGGcttttaaaatttggaaaaaactttc
gcgatttttgggaaaatttcatttttcgcgaaattaactttcgcgaattt
cttgtttaatttctaacctggcagaaactttcgcgaaaaaatgccaaaaa
cgcgaaaaacgcgaatgtttctgcccgcgaaagtttctgctcttaAAGAT
ATCATTCGAGTCATCAAAGAAAGCCTGTCTAATCAACAAAACACACTAAA
CACAAtaaaagttttcgaataaaAGCGAAACTTTGAAAGGGAACTCTAGT
AGCTAATTGAGGGTTGTAGGAATTcgataaaaatatttgacgtcagaaat
gaattcatcaaattcaaaaagtcattaCGTGAATTTATACCACGACCCAC
GGTATTGCCCGGACTTTTTCGGGCCACTCGAATTGGCCTGTCCATGTTCG
GGCCGGGTCGGTTTTTTTGGCCTGAACTTGGCACCAATGTTCATCGAGtc
aaagaatatttttactattttggcCTGAATATGACCTGAAAATGTTCGGG
TATGTTCGGGCCATTCCATGGTTCCTTTTTACCTGACGCGTGAAGCGACA
CGGAAATGCAAGTTAAGGAAATTGGgttacaaaaatacaagaaGTGGAAT
Ccactttttcataattttctcgaaataacttgaaatattttataacattt
tctTCAGGATTTGGTGCTATGTTGCAGGGTGCATTGTTCGGGCTTGCCGG
GATGATGCCACCACGATATATTCAAGCAGTGATGGCTGGACAAGGTCTTG
GAGGATTCTTTGTTTGTATTGTTAGTATCTTGTCTTCTGTAGGTAGGTGA
CTTCTAAGAATTTATTATTTTGTAATCTTCCAAAACGAGATTAAACTATT
TTGTTGGATAAAATCAACGATGAACAGATAGTTTCTAGGCTGCTGTGTCC
ACTAACAGACTCGTGCTACTTATAGACAATACTACCTGTGATTTTATAGG
ttttatagaggtctgcgattcagaatAGATAGTTTAAGAACGATAAAGAC
TCTTGTAAGCATGGCCTTATGGCCTAAACAAGtcttattttgatttgttt
ctttTAGTATCGACTAGGTACCAAACATTAGAATTTGGCATAGATCACAC
GCTTATAGATATGCCATGTGTAGACAAAGATACAGATCATAGAGATCATC
ACATTGGAATTTaatttcttaaataaaaaaaattgaatcttgTTTAGGTG
GTTCAAAGATTACGGACAGTTCTTTTGGATATTTTTGTACTGGTATATTT
GCAATGATCATCTCACTGCTTGCCTATGTTTACCTTGAACGACTGGTAAG
TTAACGATGACAAAATAATGTTAATTTTCCAATAGTTGACAAGCcacttt
taaagtaaaatttaaatCGATAGGCCGCTGATTGACgcacaaaatattca
aaataggTCAGCGTCTTCTAGTTATTatcaaagacaaaataaccgATTTG
CCAGATTTCCCTGAAATCCGCCGAATTAAGTCCCcgctgaaaattatttt
tgcgcCATAcaccaaattcaattttttccatACATTCTCCAAAGTCGAAC
TTCTCGCCTTAAAAGAGATTATTCTCTCATTCAATAACGATTCtcggcca
aaaatatcctgtaACCGCAAAAGTAGTAATTCCTGTCAAATTTACTTTTT
CCAGGCACCCGCTAAATTAAATTTCCACCGAAATTTCTACTCAATTTGCG
ACTTTCCCTTTTTCAGCCCATCGTGAAATATTACACCAACATTACGAAAG
GAGTTTGTTTCTGCACTTGTGAATGTGGTAGGTTACTTTATATCACTTTA
TGGGGGTGAAAATGTATTATAAAATTGACAAACTATCATCACGAAAGTTA
AGATGCCAGAAAGATGGGTTAAACACAGGTTGAACCAATCATAACACTGA
GAAAGAAAATGGTAAAGGTCAGCCAGATATCGTAATGCAGGATGTTAAAA
CCTGTAAACCCATAATCAATCAACAGACATATTCACaacttacaaaaaaa
aagatcgCATGTAAATCAACAATTCCAATTTACGATTCCCAATTAAATTT
TCTAATCCTTAATTCTCCAATCATAGAAAACGAATGTCATCTAAACAGCA
CTATAACAAATATAACAAATAACGAAGACACCAAGGAGGATGATGACNAA
TGTCATTTAAACAGCACTATAACAAATAAAGAAGACACCAAAGAGGATGA
TAAACAAGAAAAAGAAGGCGAGActaccaacaacaacaacaaggatATCA
ATTACCTACGCatcattaagaaaatcaaaTGTATGATGTTGACAGTCTAC
ATCACTTTCCTGGTCACTCTCTCTGTTTTCCCTTCCCTGACCGCTCGCAT
CGAATCCACGTGGGCTGATCAGAACAAATGGACTggtaattaattatttt
tttcattttcattgtaaATCTTATtacagttgagctagaatctgagaatg
tctgtgtgtgtgtgtgtgtgcgtctgtctgtgtgtgtgtctgtcaccaaa
actttggggcaggctggagacttcaaaaatggtccgattgggttgaaatt
ttgcacccttgatccttgggcaaatccctgggggtgtttttttgattttt
ggagcctggggacgagtttttcgccaaaacgaggctaaaactttggggca
ggctggagacttcaaaaatggtccgattgggttgaaattttgcacccttg
atccttgggcaaatccctgggggtgtttttttgatttttggagcctgggg
acgagtttttcgccaaaacgaggctaaaactttggggcaggctggagact
tcaaaaatggtccgattgggttgaaattttgcacccttgatccttgggca
aatccctgggggtgtttttttgatttttggagcctggggacgagtttttc
gccaaaacgaggctaaaactttggggcaggctggagacttcaaaaatggt
ccgattgggttgaaattttgcacccttgatccttgggcaaatccctgggg
gtgtttttttgatttttggagcctggggacgagtttttcgccaaaacgag
gctaaaactttggggcaggctggagacttcaaaaatggtccgattgggtt
gaaattttgcacccttgatccttgggcaaatccctgggggtgtttttttg
atttttggagcctggggacgagtttttcgccaaaacgaggctaaaacttt
ggggcaggctggagacttcaaaaatggtccgattgggttgaaattttgca
cccttgatccttgggcaaatccctgggggtgtttttttgatttttggagc
ctggggacgagtttttcgccaaaacgaggctaaaactttggggcaggctg
gagacttcaaaaatggtccgatttggctgaaattttgcacacttgattct
tgggcaaatccctgggggtatttttttcattttttcaaaattttaatttt
tggggcctggggacgagttttttgccaaaacgaggctaaaacccaaagtg
ctataatttttcttaagccattaagtttacaattgggcctacgaatgatt
tcaaagatactgaagttgagccagtgcgtttagcacgttcgacagttttt
ttcattttcattgtaaATCTTATTAAAGGAGGGTACTACGTAACTTCTTT
GTTAAGAACTTTTGCTTCCGGGAAACCGTAAAAACCTTATTAAACGGGGT
AATTAGATAACTTCCAGTCTAGCCATGCTATACgatcatggcgttctaaa
gtATGCATCCGAGGAATGATACTTTTTCTTAATAATTAAAGAATTCCAGT
GACTTTCATACGTGGGGTACATGAAAATCTGAGATTGCTAAATCTAGAAA
TGACATGCTAATATGTCTCAACTTCAAACTTAAAGTTTAAAACTTGTTCT
GTACTGTATACGCTTAGATTTTATTCTTTAGAATCGCTCTTCGTGCTGGT
TGGATGTTTCTTAACTTACAATTTATTTGATTATATTGGAAAATCAGCGG
tcagtttctttcaaaaggtaaacgaaagtatttttttatttcaatggaAA
TTAAGATCTTTCAAGCGAGTTGGTGTCATTCATTAGAAGCAGCAGTGTGG
TAGCTAAACAAACAAAGTGGCGCAATTTCTTGTGCCTCTTCTttttactc
tgtaccagagtgtatctcacgttcatcgcttcgtagtacactctatGCGC
ATTGtttgtttgatgaaaaaattcccgtacggagacctctacgatgaagt
atgatttataaatagcaacacttctctcatcgtctcccctctttCACCAA
CACTCTATTGCAGCGGTCAGTTTGAAaaaccttaaatgaaaaaagacaat
gacaacagaccctcaacggcaatgaattttgagattagccgtagatactg
tgtctgtgtacagacaacttCTTTTTGGAACCCTTAAAAACGCCACCACC
AAACGACATTAAGCAatcgaaaatagaaaaaattttcatcatACTAACAA
ACTAATTGCTCCTCCTTTTTACATCATTTCAGCCTACCAATGAAAGACCT
TGGTTGTTAGTCGTCCTGGCCGCACTAAGAGTATTATTCATtccattatt
cttattttgcaACGTGCAACCACGGATATCAAACATCCCTGTAGCGTTCA
GTCACGATTCATTACCGATCATTTTCATGGCTTTATTCGCGTTCACGGGA
GGCTATTTAGGAAGCCTTCCTTTTATTTACGGACCAAGGTTAGTGATGAC
AATTTTTCTGGCCATTTCTGTTGCTTCTGACTCCTTGACAGAAAAAGGTT
TCACCTCGACTTACTTCATTGAGTAGATCAGtcatttgtttttgaaaagt
aCATCCTTATTTTTGCAAACGCGTTTGCCCTTTTCTCTTGAAATCAAGAC
ACAATATGGTTTGATTCCACTGACCTTTACATACCctagcaaaatctttg
atcggagctttttgaaaagtggtaccctaatggcgacactactcaatagt
ggtgtaaatgcatcgagagcgttagatctacttttcctcgaaaACTTACT
TCATAACGCCGTTAGACGTtaccaattcaaaaaagacTTCTATCAAAGAT
GGTGAATGTAGCTTGGCCCATGGATATATAAAAGTCAGTGGTTGATtcct
tttatcaaaaaaatggGCAGATTTCACCCAAACTAAACGAAAATGTTCTC
ATGTAAAAGAACTGATTGAATGAGAACTGCTTCTTGTAACTACAATATAG
TCTACAGGCTCCTTTATAGGACAAGTCTAAAATGTGAGCTTACACAACAG
AAAGCACCTGATCACATCTGCGTTACTTGTAACTTGTTTTACTTCCCGCA
TCGAATAGTTCGATACTCAATCGATTGAATCAAGAATACTAATAATCGAC
CCAAACTTTAACGGTCATCGATTTCCAATCGAAATAAATATCGAATGATA
ATCGACAAACTATGGAACATTAAtcgatttgttttcttttttgtatcgat
taattcgattaatTAAAATTTAGTCATTGATCGATTCCCTTTCGATTTCG
ATTGTGAAATCTGATTGATTCGATCATCAAATTTTCAGCTTGTTTATACG
ACAAATCTTAAAGTTCAAATTCAACCGAAAATCGAACTTACATTcattct
gttttctttttctttcagcaTGGTGGAACCGCACGAACAGGAAATCACCG
CCACCCTCATCGTTTTCTCATTGGTGGCCGGATTGACTAGTGGCGCCGCT
CTCTCGTTTGCCATTGCTCCAAACGTTTAGCTCTCTGTTACATTTTTATA
GCATTTTTCTTATTTACTTCACTAAAAAGATAGAGATAttatttttgttc
atatttcaaaattctgaaTCGTAAATTATACTGGATAAAAGACGTCAGTC
AACTTTTAATCTCCGGTCAGATTCTGATTACTCCACGCATGACACTCCGT
AAGAGAGTCTGCCCAGGCGGGCCATATTAGATGAGCTTTTGAATGTGATT
GGCTGAAGCGAAACAATCGCACTAAAACAGACGCCAATCTTTAACACAAA
CATAAACATTAAAACGTAGTCACTTTCACAAGCAAGATCAACGGGGTTTT
GATTGTCTAAAATGAGCAACTGATATAAATCACATTCGCTTTTAGAATAA
AACAGTGTGCGCATAATGGATGATCTATTATGAGATTAGCTATATTTTGA
CTTTATAGAAACTTTATGAAAATAATGACATTATGCTTGTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040446	XLOC_040446	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_418	supercontig	scaffold_418:105418..112058 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.470304	0.0437089	0	0	0	0	0	0	0	0	0	0	0	0	0	0.404008	0.636206	0.0595486	0	0	0

Blast

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BLAST of TCONS_00064486 vs. Swiss-Prot (Human)
Match: S29A2 (Equilibrative nucleoside transporter 2 OS=Homo sapiens GN=SLC29A2 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 6.775e-26
Identity = 72/169 (42.60%), Postives = 104/169 (61.54%), Query Frame = 3

Query:  531 IIKKIKCMMLTVYITFLVTLSVFPSLTARIESTWADQNKWTESLFVLVGCFLTYNLFDYIGKSAVSFFQKPTNERPWXXXXXXXXXXXFIPLFLFCNVQPRISNIPVAFSHDSLPIIFMALFAFTGGYLGSLPFIYGPSMVEPHEQEITATLIVFSLVAGLTSGAALSF 1037
            + +KI    L + + F VTLSVFP++TA + S+     KW++  F  + CFL +N+ D++G+S  S+F  P +E   LL +L  LR LF+PLF+ C+V P+ S +P+ F  D+  I FM LFA + GYL SL     P  V PHE+E+   L+ F L  GL+ GA+LSF
Sbjct:  286 VFQKIWLTALCLVLVFTVTLSVFPAITAMVTSS-TSPGKWSQ-FFNPICCFLLFNIMDWLGRSLTSYFLWP-DEDSRLLPLLVCLRFLFVPLFMLCHV-PQRSRLPILFPQDAYFITFMLLFAVSNGYLVSLTMCLAPRQVLPHEREVAGALMTFFLALGLSCGASLSF 450

The following BLAST results are available for this feature:

BLAST of TCONS_00064486 vs. Swiss-Prot (Human)

BLAST of TCONS_00064486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S29A2	6.775e-26	42.60	Equilibrative nucleoside transporter 2 OS=Homo sap...	[more]

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TCONS_00064486 (transcript) - C. hemisphaerica