TCONS_00064515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064515
Unique NameTCONS_00064515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064515 ID=TCONS_00064515|Name=TCONS_00064515|organism=Clytia hemisphaerica|type=transcript|length=644bp
CTGCCATTTTTAGCCGTCATTTTGATCGAAAGTTGAAGGCTCATTTGTTA
TTTACAAAATACTAATGAGATAAAATTCCGCTACATCATCAATTGCGTGT
TAAAGCGAATTGTTACCTCCATAATGTTTAAAAACTTTCGGGACATTTCG
GATTTATCGGGTTTTAGTTGCAGagatctcaaaaaaaatttaaaaagttg
tggaagttttcaaaaaatctggGATTAAAACTTGTAAAACTCAGAGAAGA
AGAGACTTCAATGTTCAATATGGTTAAATCAACTGACTCCAATGAAGAAA
AGAAAGAACCAACAATGCGAGTTGGAGATGAATTTCAAGCTGAGGTACCT
GACGTCTTACATGATTCCTCATTGGATAAAGATCATCGTCCTGAACCACT
TCTTGTTTGGGCACCCTGTGAAAATGTATCTGATGAAAAAAtggaTGAAT
ATTTACGAGTTGCCAAAGATAAACATGGCTACAATATGGAGCAGGCTTTA
GGACTGCTTTATTGGCATAAATATGACATTGACAAAACATCTGAAGACTT
GAGAAATTTCACACCATTACCTGATGCATGGAGCATGGAAGATCAAGTTA
TATTTGAGCAATCCTTTAGTTCCTATGGAAAACACTTTCCTCGN
Run BLAST on NCBI

transcript from alignment at scaffold_418:218096..226091-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064515 ID=TCONS_00064515|Name=TCONS_00064515|organism=Clytia hemisphaerica|type=transcript|length=7996bp|location=Sequence derived from alignment at scaffold_418:218096..226091- (Clytia hemisphaerica)
CTGCCATTTTTAGCCGTCATTTTGATCGAAAGTTGAAGGCTCATTTGTTA
TTTACAAAATACTAATGAGATAAAATTCCGCTACATCATCAATTGCGTGT
TAAAGCGAATTGTTACCTCCATAATGTTTAAAAACTTTCGGGACATTTCG
GATTTATCGGGTTTTAGTTGCAGAGATCTCAAAAAAAATTTAAAAAGTTG
TGGAAGTTTTCAAAAAATCTGGGATTAAAACTTGTAAAACTCAGAGAAGA
AGAGACTTCAATGTTCAATATGGTTAAATCAACTGACTCCAATGAAGAAA
AGAAAGGTTTGTTTTACAGCACATTTAAATGTTTTGTATAAATTTCTATC
AGTCTATCTGTCTATGGCAGGACCCTGCCGGTTGTTATAGCAAACGATAT
CATACTCCAGGATGCAAGTGAAATTTTTCAATCCGCGGACGTAGACGGGG
GTTCGGTTATTATCAGTTAGGGTTAGGGTTGGAGCTCAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCACGCTTTTAGCCTGAGACGTCCTATCTCATTT
ACACTGGGTGATGAATACCCCATGCAAATGCTCACCCCGTTCATTTGCCA
GGATGTGCCTGACTGACACACTATAAGTTAGCCTGGGAATCCAAGCGTTA
AACTTTTTTCACAGTCTAGTTTATGATATTTTTGCTGCTGGTTTAACGCT
TGGCGCAGGTAACTCGCGTGCAGGGACATTTTTCCCTGCAATGCAGGTTC
GGCCTGATTAGCCAGCTTTCAGCGTATTACTTNGACAATCTCTACACCGG
ACTTAAGGAAGTCGGATGTCCGGTGTCGGAGAAGGATATTTTTTTCCACC
GGACAATCAAAACACCGGACATGACTAGTCCGGCGGCCGGTGTTTTTTAA
TTTTTTGTTTCATAAATGTCCGGCGTCCAAAATTCCCTGTATGCAACACA
CCGGACTGACACCGGACTTATCGCGTCCTGTGTAGCGAAAGGATACTTTT
TGCCACCGGACAAATACACCGGACAGTCTGGTGCGTCGTAGGGATCCTAT
GTAGGGGCACCGGTAGGGTAGGGAGCTTTCTTAATTTTTAAAGGTCTGTA
AATTACACACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAGACTAATCTACCTGCACCAAGCTCTATAATTTTAGAA
CTTTGTGAGGTGAGGTATTTTTTGTTTTTTCTAAAATTATGAGCTTGGAT
TCCCAGGCTAACTATAAGTATTTGTGAACGAGAGCTTTTTGTTGTGTCTC
GTTGGCTCAAGCGGTTAGGTGTTGGGTTTGTAAACCAAGGGGCCATTCCA
GAATTTGTCTGTAACAGGGGGGCGGCGGAAGACACAAGATTTCCAAGGGC
AAAAGTTTTCACCAAAATTCGAAATTTCCAAGGTGAGAGAAGAAAAAATG
TATGAATTTCCAAGGCAATTGAATTAAAAAAGGCAAAAAAGAGTGGAATT
TCCGATGCATTTTGGAAAAGTACATAGATTTTTATCGGAATTTCCGACCA
CCACTGGAAAAATTATTTCCGAGGCTAGAAAAAAATTTAAAATGCACGTC
GTTCGACGGGGGGTAACAAAAATTTTTTGGAATGGCCCAAGGTTGCTTGC
ATTTGGTGGTTCGAGCCGGGGTCGGAGACCTGTTTCAACGGTACGGGCAA
ATTTCAGAAAAATACTTAGAAAACAGTTCAGAACAGTTAGAAACACTTGA
GAAAGACAGAAAATCAGAATAGAAGATAGGAAAGTAGAAAATAGAGGGAA
AATAAGAGACGATGCATCCTGGAGTATGATATCGTTTGCCAACCGACCCT
GCCGACGCACCATACTGTCTGGTGTATTTGTCCGGTGGCAAAAAGTATCC
TTTTTCTACACTTAGACGCAATAAGTCTGGTGTCAGTCCGGTGTTGCATA
CAAGGAATTTTGAACGCCGGACATTTATGAAACAAAAAATTAAGAAACAG
GACGCACCGGACTGGTCATGTCCGGTGTTTTGATTGTCTGGTGAAAAAAA
ATATCCTTCTTCGACACCGGACATCTGACTTCCTTAAGTCCGGTGTAGAG
ATTGTCCGGTGTTAAAAAAATTCTCATTTTACATCGGACTTTCGCGTGTA
CTGTGTTCGTTAAGCCCGGTGCGTCGGCAGGGTCCTTTTATGGCATGGCA
TGGTTGCCAAGTTCCAAAATTCGCAGTGCAGTGTGGAAGCGATGCAAAGT
CCATGCTGAATTGTTATTTGATTAAACTGAGGTGCACGCCAAAAGAAGTT
CCACTTGCGGAACAGCACCCACTGTAAGCCCCCAAACGGGTCCAGGGCTG
AGACCTGGTGGGGGTTCCGTTCAAGGGTAAAGCTTCTGAGGAATTTGAGC
TTGTCTACCTGAAAGTTGCTCAAAATTTGTGGAAAAAGAGCTTGAATAGC
TGGTACTTCTAAGAAAGAAATGTATGAAGCTAAATGGATCATGACCCTGA
GCAGTAGCGTGGTGGGTCGACTAAAATTCAGGCAAACTGGGGAGACAAAT
TTTAGAAGATTTTGGATTTTGGCACCCCCTATCTATCTATGAAAAGTAAA
TATTTTTTTAAAAACAACGCAATCAAAGCGAGCATTTTGGGTATTTTCTC
TCTTATTGGCCGGAAACTGCCATATCTTTAAGGTGTAAAAGAGCAACGGG
GAACCGAAATTAGTAATAAGAGGCGTCTTTTTCCAGACAATCTCAATCGA
ACAGAATCAACGATCGACCAGTCGAACCAAATCGAACGCAATCAACCGAT
TGAAATTTGATTGTCAAACACAATCGAATCTCAATCGAACGTCAAAATTG
TGGGTAATATTTGATTGGTTCGATTGTTGTTCGACTGATTCGATTGTCGT
TGTTGTCGGGAAACGTTGCCCGGTTCGGGAGCATGTTGTTGATCGGACCA
TACTGCTTTCTAATCGTCAAAACAAAGATGGCGGCAAAAAATAGACAATC
AACTCCAGACGATCTCAATCAAACGCAATTGAACACAATCGAACGCAATC
AAGCATCAATCAAACGCAATCGAATATCAATCGAATCTGAAAATTGCGGT
AATATTCGATTGAGATTCGATTGCGTTTGACAATGGAATTTCAATCGGTC
GATTGCGTTTGATTTGGTTCGACTGGTTCGATCGTCAATTCCGTCGATTG
AGATCATCTGGCTTTTTGCACCCTTTGAAAAATCTCCGCTGAGGGGCATT
TGCCCCCCCCCCCTGCCACCACGCTACTCTACTAACCATGAGCCATGTTT
TAAAAATCCAAAGTGAGTTGCGTTATTAATTCAAATGAGTTGAACACCTA
TTTTTTACTCTCTTCGTCGTTATGAAATCGGGCTTTAGAATGGCCCTGCT
CCTCTCGTTCGTCTTGAAAAGCGCCAATATCTTACTTTATATTTGCTCCT
TACGCCAATACTCTAAAAGTAATTACTGCCTCACGCCGAATATATTCGGA
GTCCTGTGCACTAATTCCAGGCTGGCAAAATTCCAAATGCAGGATCAGAT
GTGAGCGAAAAGTGAGAGCAAAATTGAGCTGGTGATTTTAGGGGGCAGGG
CCCCCTGGAAGAAAAGTTTTAATATTGAATTGATGGGGAATTGCAAAAAC
ATATCTAATATTTTACTTTTTTTATCATAATCAATGATTTTCCTCATGTT
CTTTGTTGTATTTTGTCTTTTTGCTTGACTGTACTTTGAACGTAAGTCTA
ATGAATTTTTGAAAATGCGGGACACACAGAGGATGCGGGCGTACAGTGGG
ATTGAAGGTCTATTTGCATACGTGACCTGCAGGATGCGGATCCTGGGTAA
TATCCTATTACAATTGGATTGCGTTAGATTTAGACTGTAACATCATTTGT
TTTTAAATTCTATGATTAATATCTATATATTAATAGCAGTAGTCTGTCTG
TCTGTTTTCTGTCACTAAGCAATGTTTTTTTTTGTTCTCGATAAGTTTGT
TTTAATTGACAGATCAGATAGAGCCTGGTTTAGACTTTATTCAGCCTTTG
TTTTGAAATTTAAGGCCCATCTACATTTAGTGATTTTAATTTCTGCCCAG
GCTTGCCCACCACTCTTTTCTTTTGTTTTAAAGGTTTTCAAATGTGATTA
ACAATCGTATTTATTAATGACATTCAAATTCTTTTCAAAACAAAACAAAT
TCCTTTTATAGAGAAGAACATTTCAAATGTAAATCAAAACATAAAATAAA
AAAGTTTGTTGAACAACAACAGCATTCAAAGAGCAATAAAAAGCATGAGA
AAAAAAAGTCCACCTCTTTCTTCATATAAAAACATTTGAGTCGCCGTTAC
TGTTAAAAAGTGTGTAAGACATTTTGCATATCTAAATTCGAAAAGTTAGA
TATGACAAAGGGTTAAAAAAAGCAATTTTTTATCGTCTTATTATTTTTTT
TAATCTAATAAAAATATAGAGTTGTTGCACTATTCTTTGTGGCTTTCTTT
CCCGCTTTTTGATTGTAAAAATGTGTACTTAGCTTGAGGCTAATTAATTT
CTACTTTTAATTACAAATCCATCTAAAAGGTTGATACTCAAAATCAATTA
TTATTTACAAATTGATTTAAATTAAATTGATAAAACCAACGCCACAGATT
TTGAAAAAAAATCACTCTCAATGTTCTGATTCTATTTTACTCCTTAAAAA
TTTGTAAAAATTCTCCTTTTAAAAGGTATACATAATGTTTATTAGGATGA
ATTCTTATAATCAATTATTCTCCTTTAGAACCAACAATGCGAGTTGGAGA
TGAATTTCAAGCTGAGGTACCTGACGTCTTACATGGTGGGTTGCTTGCGG
CTACTGGCTTTAATTTAAACTTTATTCTGGTTNTGAATTTCAAGCTGAGG
TACCTGACGTCTTACATGGTGGGTTGCTTGCTTACTTTATTCTGGTAACA
TTAAAGGTTTTATGTATCTTAACTGATCTTAATTGTTGCTCATATCATAT
CAGCATCATTGGTGGATAAATTCTATTTACTTCTAGTTCAGCAAACTTCA
TAAAAATGAATGATTTGTGGTTTGATGAACTTGAAGATCTTATTTAATAT
TCATGTTTTTTTGTTCAGATTCCTCATTGGATAAAGATCATCGTCCTGAA
CCACTTCTTGTTTGGGCACCCTGTGAAAATGTATCTGATGAAAAAAGTAA
GAGTACATGAATTGGATTTTTTAATGTTTGTTCTGTTTCGTTTATTGGAA
TTCTCTTGTATCTCTTTTTATTCTACTTTGTGTTAACATTTTTCTTTCAT
ATAATTATATATAAAGATTATGAAAAGGACCAAAAAAATATTTCCTGGCC
GCCTGTATTGCTTTTTTTTCGTCACCGGTTTTACTGTAGGGCAGGCCTTA
TTTCAGACGATTGTGATTATAGATTTTAATGTTATTTTTTTCAGTGGATG
AATATTTACGAGTTGCCAAAGATAAACATGGCTACAATATGGAGCAGGTT
GGGAGAAAATATTCTTTTGTAAACAGCTTGCAAGAAGTACTAATTAGGAA
TCCTCACAATACACAAAATTGGAATCTTACTTCCACTTAAAAAGAGACTT
TCTTTAAATATGCCAATAAATATGGGCAAGTGAAAACCAATATAACACTT
TTTATTAGTCGTCGAGACCGTAATTATTTGTTATTTTGAATAAGAAGAGA
CTATGATTATCCATATTTATCTTATTTACAGGCTTTAGGACTGCTTTATT
GGCATAAATATGACATTGACAAAACATCTGAAGACTTGAGAAATTTCACA
CCATTACCTGGTAAGTTGGGTTTGAACTTTCAAACCTGGGTATCCACTGA
AAGAAAGTAAGTCCGTTGCAAGTACCTGTTGACAAAAAATAAATCCCGAC
AACATCCAAACAGATTTTTTTTGCAACAAATAATTCATGATAAACTTATT
TTTTTCCGTGGACACCCAGCTTAATCATTTTATGAGATTAAAATATCAAT
AAAAAGATTTGGCTCAGCCCTATCATGCGCACCTTTCAAGCCCTACAGCA
CTGTCAGTTGTGATTGGTTAGGAGTTTACATGGAAAATTATTTCAAAATG
GGAAATTTTATTGAAAACACAAGCATAGAAGGGCCCCTTCACCCAGTGGG
GTGAAGTAATGTCACTTTAGTCAAGCTTGTTGGAATACAAAAAGTAGTGT
GCAATCTGTTGTTCTAGAGAAATCCCAGGGGGGGGGCAGTCAGGCAAATT
GACCGATGGGTATGTGCGGCGGTTAAGGGTATGTTTTTCAAAATATCAGA
AATGCCCTGTAAGGGTGGACTTTTGATAAATGCACTGTATGGGTGGAAAT
TTCAGCAAATCTAAGAAAAATTGCAAATTTTTGCTCGAAAATCTTGATTT
CTTTGCTCAAAAAGAGTTTAAAATTTGAAAAAAATGCACTGTATAAGAGT
ATAAATTTCACTGATTTTTTCTGCACTGTAAGGGTGCGATTCTAAAAGCC
AATTTTTTCGTTGCACATCCCGTCAGTTGGTAAACCCGCTGCCCCCCCCC
CCCCCGGTAGAGAAATAAATTTTTTTAACTTAGTTTGTTTCATATATAAC
CCAAAATTTTATTCAATGAAATAAAAACCTAAGTGCCCAAGTCATTTCTT
CACTAAGGGTTTACATACTAGGCATACTAGGAGATTGTTTGGAGGCCTCA
GAAATGTTCTTGTGGCTATCACAGTTTAAAGAGTCTGAACTAAAATAAAT
CAAAGTTAATGTTGTTATCATTTAGATGCATGGAGCATGGAAGATCAAGT
TATATTTGAGCAATCCTTTAGTTCCTATGGAAAACACTTTCCTCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040461XLOC_040461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064515-exon-scaffold_418-1575043694:225786..226091TCONS_00064515-exon-scaffold_418-1575043694:225786..226091Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1575043694:220126..220163TCONS_00064515-exon-scaffold_418-1575043694:220126..220163Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1575043694:220024..220042TCONS_00064515-exon-scaffold_418-1575043694:220024..220042Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1575043694:219746..219823TCONS_00064515-exon-scaffold_418-1575043694:219746..219823Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1575043694:219445..219497TCONS_00064515-exon-scaffold_418-1575043694:219445..219497Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1575043694:219132..219210TCONS_00064515-exon-scaffold_418-1575043694:219132..219210Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1575043694:218096..218166TCONS_00064515-exon-scaffold_418-1575043694:218096..218166Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1510915933:225786..226091TCONS_00064515-exon-scaffold_418-1510915933:225786..226091Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1510915933:220126..220163TCONS_00064515-exon-scaffold_418-1510915933:220126..220163Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1510915933:220024..220042TCONS_00064515-exon-scaffold_418-1510915933:220024..220042Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1510915933:219746..219823TCONS_00064515-exon-scaffold_418-1510915933:219746..219823Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1510915933:219445..219497TCONS_00064515-exon-scaffold_418-1510915933:219445..219497Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1510915933:219132..219210TCONS_00064515-exon-scaffold_418-1510915933:219132..219210Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1510915933:218096..218166TCONS_00064515-exon-scaffold_418-1510915933:218096..218166Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1491911889:225786..226091TCONS_00064515-exon-scaffold_418-1491911889:225786..226091Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1491911889:220126..220163TCONS_00064515-exon-scaffold_418-1491911889:220126..220163Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1491911889:220024..220042TCONS_00064515-exon-scaffold_418-1491911889:220024..220042Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1491911889:219746..219823TCONS_00064515-exon-scaffold_418-1491911889:219746..219823Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1491911889:219445..219497TCONS_00064515-exon-scaffold_418-1491911889:219445..219497Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1491911889:219132..219210TCONS_00064515-exon-scaffold_418-1491911889:219132..219210Clytia hemisphaericaexon
TCONS_00064515-exon-scaffold_418-1491911889:218096..218166TCONS_00064515-exon-scaffold_418-1491911889:218096..218166Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:218096..226091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.506825	0.123559	0.573853	0.561426	6.32221	4.99589	3.42092	5.3377	0.213546	0.264511	0.770222	0.253157	0.168537	0.612594	0.287792	0.308845	0.570707	0.194986	0.404075	0.28189	0.490027	0.717054	1.01695	1.18872	1.22435	3.27811	0.173739	1.11252	0.843804	1.43284
Blast
[Close]
BLAST of TCONS_00064515 vs. Swiss-Prot (Human)
Match: RCOR1 (REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 6.485e-37
Identity = 62/114 (54.39%), Postives = 88/114 (77.19%), Query Frame = 3 
Query:  315 MRVGDEFQAEVPDV----LHDSSLDKDHRPEPLLVWAPCENVSDEKMDEYLRVAKDKHGYNMEQALGLLYWHKYDIDKTSEDLRNFTPLPDAWSMEDQVIFEQSFSSYGKHFPR 644
            MRVG ++QA VPD     L   S ++D+    +LVW+P +N+S+ K+DEY+ +AK+KHGYNMEQALG+L+WHK++I+K+  DL NFTP PD W++ED+V+FEQ+FS +GK F R
Sbjct:  105 MRVGPQYQAVVPDFDPAKLARRSQERDNLG--MLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHR 216
The following BLAST results are available for this feature:
BLAST of TCONS_00064515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RCOR16.485e-3754.39REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 S... [more]
back to top