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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064516 ID=TCONS_00064516|Name=TCONS_00064516|organism=Clytia hemisphaerica|type=transcript|length=644bp CTGCCATTTTTAGCCGTCATTTTGATCGAAAGTTGAAGGCTCATTTGTTA TTTACAAAATACTAATGAGATAAAATTCCGCTACATCATCAATTGCGTGT TAAAGCGAATTGTTACCTCCATAATGTTTAAAAACTTTCGGGACATTTCG GATTTATCGGGTTTTAGTTGCAGagatctcaaaaaaaatttaaaaagttg tggaagttttcaaaaaatctggGATTAAAACTTGTAAAACTCAGAGAAGA AGAGACTTCAATGTTCAATATGGTTAAATCAACTGACTCCAATGAAGAAA AGAAAGAACCAACAATGCGAGTTGGAGATGAATTTCAAGCTGAGGTACCT GACGTCTTACATGATTCCTCATTGGATAAAGATCATCGTCCTGAACCACT TCTTGTTTGGGCACCCTGTGAAAATGTATCTGATGAAAAAAtggaTGAAT ATTTACGAGTTGCCAAAGATAAACATGGCTACAATATGGAGCAGGCTTTA GGACTGCTTTATTGGCATAAATATGACATTGACAAAACATCTGAAGACTT GAGAAATTTCACACCATTACCTGATGCATGGAGCATGGAAGATCAAGTTA TATTTGAGCAATCCTTTAGTTCCTATGGAAAACACTTTCCTCGN Run BLAST on NCBI transcript from alignment at scaffold_418:218096..226091- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064516 ID=TCONS_00064516|Name=TCONS_00064516|organism=Clytia hemisphaerica|type=transcript|length=7996bp|location=Sequence derived from alignment at scaffold_418:218096..226091- (Clytia hemisphaerica) CTGCCATTTTTAGCCGTCATTTTGATCGAAAGTTGAAGGCTCATTTGTTA
TTTACAAAATACTAATGAGATAAAATTCCGCTACATCATCAATTGCGTGT
TAAAGCGAATTGTTACCTCCATAATGTTTAAAAACTTTCGGGACATTTCG
GATTTATCGGGTTTTAGTTGCAGAGATCTCAAAAAAAATTTAAAAAGTTG
TGGAAGTTTTCAAAAAATCTGGGATTAAAACTTGTAAAACTCAGAGAAGA
AGAGACTTCAATGTTCAATATGGTTAAATCAACTGACTCCAATGAAGAAA
AGAAAGGTTTGTTTTACAGCACATTTAAATGTTTTGTATAAATTTCTATC
AGTCTATCTGTCTATGGCAGGACCCTGCCGGTTGTTATAGCAAACGATAT
CATACTCCAGGATGCAAGTGAAATTTTTCAATCCGCGGACGTAGACGGGG
GTTCGGTTATTATCAGTTAGGGTTAGGGTTGGAGCTCAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCACGCTTTTAGCCTGAGACGTCCTATCTCATTT
ACACTGGGTGATGAATACCCCATGCAAATGCTCACCCCGTTCATTTGCCA
GGATGTGCCTGACTGACACACTATAAGTTAGCCTGGGAATCCAAGCGTTA
AACTTTTTTCACAGTCTAGTTTATGATATTTTTGCTGCTGGTTTAACGCT
TGGCGCAGGTAACTCGCGTGCAGGGACATTTTTCCCTGCAATGCAGGTTC
GGCCTGATTAGCCAGCTTTCAGCGTATTACTTNGACAATCTCTACACCGG
ACTTAAGGAAGTCGGATGTCCGGTGTCGGAGAAGGATATTTTTTTCCACC
GGACAATCAAAACACCGGACATGACTAGTCCGGCGGCCGGTGTTTTTTAA
TTTTTTGTTTCATAAATGTCCGGCGTCCAAAATTCCCTGTATGCAACACA
CCGGACTGACACCGGACTTATCGCGTCCTGTGTAGCGAAAGGATACTTTT
TGCCACCGGACAAATACACCGGACAGTCTGGTGCGTCGTAGGGATCCTAT
GTAGGGGCACCGGTAGGGTAGGGAGCTTTCTTAATTTTTAAAGGTCTGTA
AATTACACACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAGACTAATCTACCTGCACCAAGCTCTATAATTTTAGAA
CTTTGTGAGGTGAGGTATTTTTTGTTTTTTCTAAAATTATGAGCTTGGAT
TCCCAGGCTAACTATAAGTATTTGTGAACGAGAGCTTTTTGTTGTGTCTC
GTTGGCTCAAGCGGTTAGGTGTTGGGTTTGTAAACCAAGGGGCCATTCCA
GAATTTGTCTGTAACAGGGGGGCGGCGGAAGACACAAGATTTCCAAGGGC
AAAAGTTTTCACCAAAATTCGAAATTTCCAAGGTGAGAGAAGAAAAAATG
TATGAATTTCCAAGGCAATTGAATTAAAAAAGGCAAAAAAGAGTGGAATT
TCCGATGCATTTTGGAAAAGTACATAGATTTTTATCGGAATTTCCGACCA
CCACTGGAAAAATTATTTCCGAGGCTAGAAAAAAATTTAAAATGCACGTC
GTTCGACGGGGGGTAACAAAAATTTTTTGGAATGGCCCAAGGTTGCTTGC
ATTTGGTGGTTCGAGCCGGGGTCGGAGACCTGTTTCAACGGTACGGGCAA
ATTTCAGAAAAATACTTAGAAAACAGTTCAGAACAGTTAGAAACACTTGA
GAAAGACAGAAAATCAGAATAGAAGATAGGAAAGTAGAAAATAGAGGGAA
AATAAGAGACGATGCATCCTGGAGTATGATATCGTTTGCCAACCGACCCT
GCCGACGCACCATACTGTCTGGTGTATTTGTCCGGTGGCAAAAAGTATCC
TTTTTCTACACTTAGACGCAATAAGTCTGGTGTCAGTCCGGTGTTGCATA
CAAGGAATTTTGAACGCCGGACATTTATGAAACAAAAAATTAAGAAACAG
GACGCACCGGACTGGTCATGTCCGGTGTTTTGATTGTCTGGTGAAAAAAA
ATATCCTTCTTCGACACCGGACATCTGACTTCCTTAAGTCCGGTGTAGAG
ATTGTCCGGTGTTAAAAAAATTCTCATTTTACATCGGACTTTCGCGTGTA
CTGTGTTCGTTAAGCCCGGTGCGTCGGCAGGGTCCTTTTATGGCATGGCA
TGGTTGCCAAGTTCCAAAATTCGCAGTGCAGTGTGGAAGCGATGCAAAGT
CCATGCTGAATTGTTATTTGATTAAACTGAGGTGCACGCCAAAAGAAGTT
CCACTTGCGGAACAGCACCCACTGTAAGCCCCCAAACGGGTCCAGGGCTG
AGACCTGGTGGGGGTTCCGTTCAAGGGTAAAGCTTCTGAGGAATTTGAGC
TTGTCTACCTGAAAGTTGCTCAAAATTTGTGGAAAAAGAGCTTGAATAGC
TGGTACTTCTAAGAAAGAAATGTATGAAGCTAAATGGATCATGACCCTGA
GCAGTAGCGTGGTGGGTCGACTAAAATTCAGGCAAACTGGGGAGACAAAT
TTTAGAAGATTTTGGATTTTGGCACCCCCTATCTATCTATGAAAAGTAAA
TATTTTTTTAAAAACAACGCAATCAAAGCGAGCATTTTGGGTATTTTCTC
TCTTATTGGCCGGAAACTGCCATATCTTTAAGGTGTAAAAGAGCAACGGG
GAACCGAAATTAGTAATAAGAGGCGTCTTTTTCCAGACAATCTCAATCGA
ACAGAATCAACGATCGACCAGTCGAACCAAATCGAACGCAATCAACCGAT
TGAAATTTGATTGTCAAACACAATCGAATCTCAATCGAACGTCAAAATTG
TGGGTAATATTTGATTGGTTCGATTGTTGTTCGACTGATTCGATTGTCGT
TGTTGTCGGGAAACGTTGCCCGGTTCGGGAGCATGTTGTTGATCGGACCA
TACTGCTTTCTAATCGTCAAAACAAAGATGGCGGCAAAAAATAGACAATC
AACTCCAGACGATCTCAATCAAACGCAATTGAACACAATCGAACGCAATC
AAGCATCAATCAAACGCAATCGAATATCAATCGAATCTGAAAATTGCGGT
AATATTCGATTGAGATTCGATTGCGTTTGACAATGGAATTTCAATCGGTC
GATTGCGTTTGATTTGGTTCGACTGGTTCGATCGTCAATTCCGTCGATTG
AGATCATCTGGCTTTTTGCACCCTTTGAAAAATCTCCGCTGAGGGGCATT
TGCCCCCCCCCCCTGCCACCACGCTACTCTACTAACCATGAGCCATGTTT
TAAAAATCCAAAGTGAGTTGCGTTATTAATTCAAATGAGTTGAACACCTA
TTTTTTACTCTCTTCGTCGTTATGAAATCGGGCTTTAGAATGGCCCTGCT
CCTCTCGTTCGTCTTGAAAAGCGCCAATATCTTACTTTATATTTGCTCCT
TACGCCAATACTCTAAAAGTAATTACTGCCTCACGCCGAATATATTCGGA
GTCCTGTGCACTAATTCCAGGCTGGCAAAATTCCAAATGCAGGATCAGAT
GTGAGCGAAAAGTGAGAGCAAAATTGAGCTGGTGATTTTAGGGGGCAGGG
CCCCCTGGAAGAAAAGTTTTAATATTGAATTGATGGGGAATTGCAAAAAC
ATATCTAATATTTTACTTTTTTTATCATAATCAATGATTTTCCTCATGTT
CTTTGTTGTATTTTGTCTTTTTGCTTGACTGTACTTTGAACGTAAGTCTA
ATGAATTTTTGAAAATGCGGGACACACAGAGGATGCGGGCGTACAGTGGG
ATTGAAGGTCTATTTGCATACGTGACCTGCAGGATGCGGATCCTGGGTAA
TATCCTATTACAATTGGATTGCGTTAGATTTAGACTGTAACATCATTTGT
TTTTAAATTCTATGATTAATATCTATATATTAATAGCAGTAGTCTGTCTG
TCTGTTTTCTGTCACTAAGCAATGTTTTTTTTTGTTCTCGATAAGTTTGT
TTTAATTGACAGATCAGATAGAGCCTGGTTTAGACTTTATTCAGCCTTTG
TTTTGAAATTTAAGGCCCATCTACATTTAGTGATTTTAATTTCTGCCCAG
GCTTGCCCACCACTCTTTTCTTTTGTTTTAAAGGTTTTCAAATGTGATTA
ACAATCGTATTTATTAATGACATTCAAATTCTTTTCAAAACAAAACAAAT
TCCTTTTATAGAGAAGAACATTTCAAATGTAAATCAAAACATAAAATAAA
AAAGTTTGTTGAACAACAACAGCATTCAAAGAGCAATAAAAAGCATGAGA
AAAAAAAGTCCACCTCTTTCTTCATATAAAAACATTTGAGTCGCCGTTAC
TGTTAAAAAGTGTGTAAGACATTTTGCATATCTAAATTCGAAAAGTTAGA
TATGACAAAGGGTTAAAAAAAGCAATTTTTTATCGTCTTATTATTTTTTT
TAATCTAATAAAAATATAGAGTTGTTGCACTATTCTTTGTGGCTTTCTTT
CCCGCTTTTTGATTGTAAAAATGTGTACTTAGCTTGAGGCTAATTAATTT
CTACTTTTAATTACAAATCCATCTAAAAGGTTGATACTCAAAATCAATTA
TTATTTACAAATTGATTTAAATTAAATTGATAAAACCAACGCCACAGATT
TTGAAAAAAAATCACTCTCAATGTTCTGATTCTATTTTACTCCTTAAAAA
TTTGTAAAAATTCTCCTTTTAAAAGGTATACATAATGTTTATTAGGATGA
ATTCTTATAATCAATTATTCTCCTTTAGAACCAACAATGCGAGTTGGAGA
TGAATTTCAAGCTGAGGTACCTGACGTCTTACATGGTGGGTTGCTTGCGG
CTACTGGCTTTAATTTAAACTTTATTCTGGTTNTGAATTTCAAGCTGAGG
TACCTGACGTCTTACATGGTGGGTTGCTTGCTTACTTTATTCTGGTAACA
TTAAAGGTTTTATGTATCTTAACTGATCTTAATTGTTGCTCATATCATAT
CAGCATCATTGGTGGATAAATTCTATTTACTTCTAGTTCAGCAAACTTCA
TAAAAATGAATGATTTGTGGTTTGATGAACTTGAAGATCTTATTTAATAT
TCATGTTTTTTTGTTCAGATTCCTCATTGGATAAAGATCATCGTCCTGAA
CCACTTCTTGTTTGGGCACCCTGTGAAAATGTATCTGATGAAAAAAGTAA
GAGTACATGAATTGGATTTTTTAATGTTTGTTCTGTTTCGTTTATTGGAA
TTCTCTTGTATCTCTTTTTATTCTACTTTGTGTTAACATTTTTCTTTCAT
ATAATTATATATAAAGATTATGAAAAGGACCAAAAAAATATTTCCTGGCC
GCCTGTATTGCTTTTTTTTCGTCACCGGTTTTACTGTAGGGCAGGCCTTA
TTTCAGACGATTGTGATTATAGATTTTAATGTTATTTTTTTCAGTGGATG
AATATTTACGAGTTGCCAAAGATAAACATGGCTACAATATGGAGCAGGTT
GGGAGAAAATATTCTTTTGTAAACAGCTTGCAAGAAGTACTAATTAGGAA
TCCTCACAATACACAAAATTGGAATCTTACTTCCACTTAAAAAGAGACTT
TCTTTAAATATGCCAATAAATATGGGCAAGTGAAAACCAATATAACACTT
TTTATTAGTCGTCGAGACCGTAATTATTTGTTATTTTGAATAAGAAGAGA
CTATGATTATCCATATTTATCTTATTTACAGGCTTTAGGACTGCTTTATT
GGCATAAATATGACATTGACAAAACATCTGAAGACTTGAGAAATTTCACA
CCATTACCTGGTAAGTTGGGTTTGAACTTTCAAACCTGGGTATCCACTGA
AAGAAAGTAAGTCCGTTGCAAGTACCTGTTGACAAAAAATAAATCCCGAC
AACATCCAAACAGATTTTTTTTGCAACAAATAATTCATGATAAACTTATT
TTTTTCCGTGGACACCCAGCTTAATCATTTTATGAGATTAAAATATCAAT
AAAAAGATTTGGCTCAGCCCTATCATGCGCACCTTTCAAGCCCTACAGCA
CTGTCAGTTGTGATTGGTTAGGAGTTTACATGGAAAATTATTTCAAAATG
GGAAATTTTATTGAAAACACAAGCATAGAAGGGCCCCTTCACCCAGTGGG
GTGAAGTAATGTCACTTTAGTCAAGCTTGTTGGAATACAAAAAGTAGTGT
GCAATCTGTTGTTCTAGAGAAATCCCAGGGGGGGGGCAGTCAGGCAAATT
GACCGATGGGTATGTGCGGCGGTTAAGGGTATGTTTTTCAAAATATCAGA
AATGCCCTGTAAGGGTGGACTTTTGATAAATGCACTGTATGGGTGGAAAT
TTCAGCAAATCTAAGAAAAATTGCAAATTTTTGCTCGAAAATCTTGATTT
CTTTGCTCAAAAAGAGTTTAAAATTTGAAAAAAATGCACTGTATAAGAGT
ATAAATTTCACTGATTTTTTCTGCACTGTAAGGGTGCGATTCTAAAAGCC
AATTTTTTCGTTGCACATCCCGTCAGTTGGTAAACCCGCTGCCCCCCCCC
CCCCCGGTAGAGAAATAAATTTTTTTAACTTAGTTTGTTTCATATATAAC
CCAAAATTTTATTCAATGAAATAAAAACCTAAGTGCCCAAGTCATTTCTT
CACTAAGGGTTTACATACTAGGCATACTAGGAGATTGTTTGGAGGCCTCA
GAAATGTTCTTGTGGCTATCACAGTTTAAAGAGTCTGAACTAAAATAAAT
CAAAGTTAATGTTGTTATCATTTAGATGCATGGAGCATGGAAGATCAAGT
TATATTTGAGCAATCCTTTAGTTCCTATGGAAAACACTTTCCTCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064516-exon-scaffold_418-1575043694:225786..226091 | TCONS_00064516-exon-scaffold_418-1575043694:225786..226091 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1575043694:220107..220163 | TCONS_00064516-exon-scaffold_418-1575043694:220107..220163 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1575043694:219746..219823 | TCONS_00064516-exon-scaffold_418-1575043694:219746..219823 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1575043694:219445..219497 | TCONS_00064516-exon-scaffold_418-1575043694:219445..219497 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1575043694:219132..219210 | TCONS_00064516-exon-scaffold_418-1575043694:219132..219210 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1575043694:218096..218166 | TCONS_00064516-exon-scaffold_418-1575043694:218096..218166 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1510915933:225786..226091 | TCONS_00064516-exon-scaffold_418-1510915933:225786..226091 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1510915933:220107..220163 | TCONS_00064516-exon-scaffold_418-1510915933:220107..220163 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1510915933:219746..219823 | TCONS_00064516-exon-scaffold_418-1510915933:219746..219823 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1510915933:219445..219497 | TCONS_00064516-exon-scaffold_418-1510915933:219445..219497 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1510915933:219132..219210 | TCONS_00064516-exon-scaffold_418-1510915933:219132..219210 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1510915933:218096..218166 | TCONS_00064516-exon-scaffold_418-1510915933:218096..218166 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1491911889:225786..226091 | TCONS_00064516-exon-scaffold_418-1491911889:225786..226091 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1491911889:220107..220163 | TCONS_00064516-exon-scaffold_418-1491911889:220107..220163 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1491911889:219746..219823 | TCONS_00064516-exon-scaffold_418-1491911889:219746..219823 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1491911889:219445..219497 | TCONS_00064516-exon-scaffold_418-1491911889:219445..219497 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1491911889:219132..219210 | TCONS_00064516-exon-scaffold_418-1491911889:219132..219210 | Clytia hemisphaerica | exon |
TCONS_00064516-exon-scaffold_418-1491911889:218096..218166 | TCONS_00064516-exon-scaffold_418-1491911889:218096..218166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_418 | supercontig | scaffold_418:218096..226091 - |
Blast
BLAST of TCONS_00064516 vs. Swiss-Prot (Human)
Match: RCOR1 (REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 6.485e-37 Identity = 62/114 (54.39%), Postives = 88/114 (77.19%), Query Frame = 3
Query: 315 MRVGDEFQAEVPDV----LHDSSLDKDHRPEPLLVWAPCENVSDEKMDEYLRVAKDKHGYNMEQALGLLYWHKYDIDKTSEDLRNFTPLPDAWSMEDQVIFEQSFSSYGKHFPR 644
MRVG ++QA VPD L S ++D+ +LVW+P +N+S+ K+DEY+ +AK+KHGYNMEQALG+L+WHK++I+K+ DL NFTP PD W++ED+V+FEQ+FS +GK F R
Sbjct: 105 MRVGPQYQAVVPDFDPAKLARRSQERDNLG--MLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHR 216
The following BLAST results are available for this feature:
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