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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064519 ID=TCONS_00064519|Name=TCONS_00064519|organism=Clytia hemisphaerica|type=transcript|length=1559bp
CAACAAAACTCGAAACACAAATTACATAGATCTGAAAAATCTAATCAAAC
TGAATCATATTGAAAAACATGATTGTGGATAAATTGAAAGAAACGTTTGA
AtTATGGGGTATCGGCAAATCAGGCTACCGATGCAAAGTTTGTCAAATCG
TTTGTCACAAAGATTGCAAGAATCATGTTGTGATGGAATGTCGACCTCAA
CGATCATTCTCTATGAGAGaTCCAAAGAAGTCTTTAAAGAAACGAATGAA
CCACGATTCTTCATGGCAAGGGTCCACAGATTCTGTGGTCAACGAATCAT
TGGATTCCACTACCATCAGTCGATTCTCCGACAGCTCTGTCGATTTCTCA
GATGCGTTGATCATCGAACGACTGAAAGAAAGAATCACTAGACTCGAAGT
CgaaaaaattgaaatgaagaaagaaaattcaacGTTGAAGACGAAACTGA
ATACAGCTGAGAAACAAGTCGAATCTTTGCAATCACAACTAGAACAGATT
CGTCCTCTCTCCGTCAAATTCATGCTCGACCAACTAGAACGGTTGAGCAC
GTGTAAGGAGACGGATCTTTAATGTGATTGGTAGTTGAGAATCAGTCCTT
TAACCTGATTGGTTGGTTTGGAGATGCATCAGTAACGTGATTGGTTCATT
GATATTCATCCTTGAATCTGATtggatcatttgaaaaaaaaagaaggatt
CCGCCAAGCGTGCCCATTTGGAGAGGCTAAATGTACTCATTTTCACATGA
AGGCCGTTCTATAGACATTCGTCTGCCGTAACTTAAGACCTTCGTACTGA
AATGTGAAATGGTAAACATTACTCAATAATCTCTATCAATCAAAAGAACA
TTTTAGAGAGAGCTCGAAAGCTCATTAAACTAGAGTTGGACTTTAATAGA
TACATCTAAAACTGCTTTATTTTGGAGTTCACCTGGAAAAAAGACAATAT
TTCTTCTGCTACAGCACAGTTTTCCTCTGTGTTACTCCGAACTTGAATCG
TTCTTCAGAAAGCTCTTAATTTTATTCTTTATATATTAAGATGATATACA
CTTTATTTATAGTATTTATTTATTATCTTAAAAATGCCAGTTAATACctt
ttagaaaattttataaGGTAACATAGAAAACTTTGCTTGTATATATTTAG
TTTTTGCCATAACTTCTATGTTGAACTTACCGTCCCctgtaaaaattcaa
aacgatattccaatgaaaaaaaatagaaatatttaaagtgatattatgaa
aatttttgatctcAATCCTCTGACATGATGAAAACATGATGACCTTTAGA
AAACCATTTAGAGATTTTTCAGCCATAAAAGTTACGAAAAAGTCACTATT
TCTTTCGtattttgtgtgaatatttcaatttttatttgtatattttgttt
ctaaaaaatctcaTCAAATCCTTCAatattcatttcatttaaaatatTAT
TCGTTCGTTTAGttattttctaaatatttgtcaaaattttatttttttgt
agaaTATCGCAAACTTATACGTCAAAAGTGAATTCAATATGAATACCATT
CTTTAAATT Run BLAST on NCBI transcript from alignment at scaffold_418:251945..255281- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064519 ID=TCONS_00064519|Name=TCONS_00064519|organism=Clytia hemisphaerica|type=transcript|length=3337bp|location=Sequence derived from alignment at scaffold_418:251945..255281- (Clytia hemisphaerica)
CAACAAAACTCGAAACACAAATTACATAGATCTGAAAAATCTAATCAAAC
TGAATCATATTGAAAAACATGATTGTGGATAAATTGAAAGAAACGTTTGA
AGTAAGTATCTCTGTCAATTTCCTCTCATGTTAAACGACAACCCTCACTA
AAACTTCCGTAATTTGAGAAACTCTCACAGCGAACTCTCTATTGATGGTA
CATTTTAGAGGGCTTTTAAGAGTCCTAAGTACACATGAATGAAATTTTAC
TCATCAAGAAGGAAAATAACTATTTGAGGAAAGTCAACTCATGGGCTTCC
TTAGACATTAGATTCTGTAAAGTTCACGCATGCACGCGCCGAGTTTTAAA
ATACTAAAGTAGTAATATACTCTGAATTCATTTGTAAGAAAGGATGATGA
TAAGAAAGTGAAATCTATAAGAATATGAATAGCCCGTAGAAGTGTGCAAA
TAAAAACGCACAAAACAAAATGTCAAAAATTACCTCCAACGGGAAATGAC
ATCAATTTGTAGTATATAACGGTAGTTAAACCCTGCTGACAAGTTCATTC
ATTTCTCGCAAAATGAGTTTTCGGCGACGTCATAATTTGTCGACCTATTA
GCTTCATCTGTTTCTTGTCTCTTTTCCTCACTCTCTTTCGCCATACTTAA
GGAGATGCCGATTGTCAAGACAATGATGCGAGTTAACCGCAATCTTTTGC
TTTCTATATAAACACAAACATTTTGCCATTAGAGTAACATTTTCATTTTC
GGCTGTCATTTCACAAGAAAACATCTTTGAGGCACTTTGTGAACGAAAAC
ACTTAAATGCAGTTATGGTATTGAAAAACACGAACTGTCTTTCGCCTGCT
TCGTTGAAAACAACGAAATCTGTGAAATATTCTTTGAAAGCCATTGCTTA
CTCTCTGGTAAGATCTCTTTGCCAATTTGCCATTGAAATTATATTGATTT
ATGAAATATTACTTTTTCTGAATGGAATTGTCAGAGAACTTAATCCTTGA
CATAATATCTGATTTTTGACCAATTTTATTTTTTCTCATTTCAGTTATGG
GGTATCGGCAAATCAGGCTACCGATGCAAAGTTTGTCAAATCGTTTGTCA
CAAAGATTGCAAGAATCATGTTGTGATGGAATGTCGACCTCAACGATCAT
TCTCTATGAGAGGTTGGTCATTTCTTTACGCTTCGACTCGATCGTCAAGG
ATCCCTTGATAATAAAAAACAACCATTTTTATAGGGCATTGCCATGCTTT
CAGAGCAAGGCCTAACACATTTTATATCTATGTACCTTCGGCAACCGTTT
GTTCCATTTATGACTGTAGCGTAAATGTTTGGTCACGGGAAAAGATGCAG
CAGATTTTTCTTACTTTCTTTAGATAATATTACAAAATTCTCAGGGCTTG
GTCCATTCCCAAGAAACTGTTTTTTCAAAAATAATTCTGTCATATTAGTC
AATCCTGCTATACGTTCGTTTTTCCTCTTTTTGCCAAAACCCAATCTAGT
CCAACTGACAAATTTCAATCAACCAATAGAATTATTTTTGTTTGATAAGT
AAAATTAAACCTTCTTTTTTTCTTTTGCAGATCCAAAGAAGTCTTTAAAG
AAACGAATGAACCACGATTCTTCATGGCAAGGGTCCACAGATTCTGTGGT
CAACGAATCATTGGATTCCACTACCATCAGTCGATTCTCCGACAGCTCTG
TCGATTTCTCAGATGCGTTGATCATCGAACGACTGAAAGAAAGAATCACT
AGACTCGAAGTCGTAAGTTAATTTTTACTTAATCTTTTTCTCATAGCAAA
ATTCAAAATTCTATATATTATGTATATGTGAGGTCCCCATGTATGAGTTT
GGTAAATTATGTTGAAGTTAAAAAAATGTTCACTTGTTTTTTTGTGAATG
GGCATCTTTTCATTGAATTTATGAATCCTTATCCCTAAGCTAAATCAACA
CTGATAATCTTAAATTTTTGAGATTGTTTCGTATAACTTCTGATTCAAGC
TTACACGCTTTAAAATGGAAGCCATTTTTAGAGAGTTAGTATAATTATGC
TGACATTGTTTCCACACGGTATAGCAAGAAAGACTGCATACATAAAGCGA
ATCAGATTTCTTAGCTCTGGGATCTTTTTGTGTGAATTTAAATTTAAATA
TAAAGCATTTAATTTTATTTTCTTCTTAGGAAAAAATTGAAATGAAGAAA
GAAAATTCAACGTTGAAGACGAAACTGAATACAGCTGAGAAACAAGTCGA
ATCTTTGCAATCACAACTAGAACAGATTCGTCCTCTCTCCGTCAAATTCA
TGCTCGACCAACTAGAACGGTTGAGCACGTGTAAGGAGACGGATCTTTAA
TGTGATTGGTAGTTGAGAATCAGTCCTTTAACCTGATTGGTTGGTTTGGA
GATGCATCAGTAACGTGATTGGTTCATTGATATTCATCCTTGAATCTGAT
TGGATCATTTGAAAAAAAAAGAAGGATTCCGCCAAGCGTGCCCATTTGGA
GAGGCTAAATGTACTCATTTTCACATGAAGGCCGTTCTATAGACATTCGT
CTGCCGTAACTTAAGACCTTCGTACTGAAATGTGAAATGGTAAACATTAC
TCAATAATCTCTATCAATCAAAAGAACATTTTAGAGAGAGCTCGAAAGCT
CATTAAACTAGAGTTGGACTTTAATAGATACATCTAAAACTGCTTTATTT
TGGAGTTCACCTGGAAAAAAGACAATATTTCTTCTGCTACAGCACAGTTT
TCCTCTGTGTTACTCCGAACTTGAATCGTTCTTCAGAAAGCTCTTAATTT
TATTCTTTATATATTAAGATGATATACACTTTATTTATAGTATTTATTTA
TTATCTTAAAAATGCCAGTTAATACCTTTTAGAAAATTTTATAAGGTAAC
ATAGAAAACTTTGCTTGTATATATTTAGTTTTTGCCATAACTTCTATGTT
GAACTTACCGTCCCCTGTAAAAATTCAAAACGATATTCCAATGAAAAAAA
ATAGAAATATTTAAAGTGATATTATGAAAATTTTTGATCTCAATCCTCTG
ACATGATGAAAACATGATGACCTTTAGAAAACCATTTAGAGATTTTTCAG
CCATAAAAGTTACGAAAAAGTCACTATTTCTTTCGTATTTTGTGTGAATA
TTTCAATTTTTATTTGTATATTTTGTTTCTAAAAAATCTCATCAAATCCT
TCAATATTCATTTCATTTAAAATATTATTCGTTCGTTTAGTTATTTTCTA
AATATTTGTCAAAATTTTATTTTTTTGTAGAATATCGCAAACTTATACGT
CAAAAGTGAATTCAATATGAATACCATTCTTTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064519-exon-scaffold_418-1575043694:255181..255281 | TCONS_00064519-exon-scaffold_418-1575043694:255181..255281 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1575043694:254120..254237 | TCONS_00064519-exon-scaffold_418-1575043694:254120..254237 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1575043694:253520..253701 | TCONS_00064519-exon-scaffold_418-1575043694:253520..253701 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1575043694:251945..253102 | TCONS_00064519-exon-scaffold_418-1575043694:251945..253102 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1510915933:255181..255281 | TCONS_00064519-exon-scaffold_418-1510915933:255181..255281 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1510915933:254120..254237 | TCONS_00064519-exon-scaffold_418-1510915933:254120..254237 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1510915933:253520..253701 | TCONS_00064519-exon-scaffold_418-1510915933:253520..253701 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1510915933:251945..253102 | TCONS_00064519-exon-scaffold_418-1510915933:251945..253102 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1491911889:255181..255281 | TCONS_00064519-exon-scaffold_418-1491911889:255181..255281 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1491911889:254120..254237 | TCONS_00064519-exon-scaffold_418-1491911889:254120..254237 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1491911889:253520..253701 | TCONS_00064519-exon-scaffold_418-1491911889:253520..253701 | Clytia hemisphaerica | exon |
| TCONS_00064519-exon-scaffold_418-1491911889:251945..253102 | TCONS_00064519-exon-scaffold_418-1491911889:251945..253102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:251945..255281 - |
Blast
The following BLAST results are available for this feature:
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