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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064546 ID=TCONS_00064546|Name=TCONS_00064546|organism=Clytia hemisphaerica|type=transcript|length=4407bp
GGTGCATTTAGAAAGAGCAATGTCGATCAAAGAGCTTTGGTATACAACTC
TTACGAAGAAATTCTCAAAAAGAGTTCGAAACACCATCAAAAAGAATATC
TACACCGTCGGTAGTGGAAGTTATGACATTGAAAAAGCACGACACAGCGG
ATATGTCGACATGTTCAATTACGACGATTATGATCACGTGACTatggatg
acgtcatcgatgagaCAATGACATCATCTTCATTTCAACCGAAGAAAAAA
AGCGATGCATCAAAGTATCAGTGTAAAAGTAATGACGTCAAAAGTCGTTA
CCAGTATAAATCTGACGTCGTCAATTTACGTCACGATTATAAGTCGGATG
TTGTCATACACGTCACTGACACTACACATTACGATATTCCGAAATTACAA
CCTCTTGAAGATGATTTTGACGTTCATCCTGCAATGGATTCTGAGCACTT
TTATGACGTTCCAAAAGCAATCATGCACGGCCATCACGACACACCAAACA
TAAAAAAACGTCAACGGAAAACAAACAACGCCAGAAAAAACCGAGATTTT
CATTTGAACGTTCCTGACCGGGATAGCATGGTTTCTGGAAGATATCAACG
TTTGGTTTTACGTAAAAAGAAAGAATTAAAGAAACAACAGCGTAGAAGTC
GTATAAATGAACTTTACGAAAACGTCGAAAGTGGATCCGACTCCGACAGT
GATATGACGGATTCTGAGGACGACATTTCCGGTACTGATAGTCCGTATGA
AGATTATTACGACATGTATACGCCGTTAGATGGATGTCATGATCAGAATG
AAAAACCTGAGTTTTACGGACGTTTCTTCAGTCATACCTTAACACGTGAC
AAAGAGAGGCTAAGTACAGGTTTTCAGAGAAGCAATTTCAAGCGTAGTGT
ACATAGGTCCGTAAACGTCAAATTCGAATTCAAGAAAAGCAATACCAAGT
TAGTAAACACACTAAACAGAGATAACccattgaaaaaaacttttgataaa
gTCAAACTGTTGGCAACTGATGATTGGCTTTTCGAGCTTGATGAATCCAA
GTTGGCCTTAGAACTAAAAATACGGAATGGTCTTGAAAGCAGGATCTTGT
ACCACCATTTGAGAGGCTGGAAACCTAAAAATGGTTTCCGTGCCTCAGCC
TGGAAAGACAAATTCGCAGAGGATTTGACAGTGTACGAACTATTTTTATT
CATATCTGGTAATTGTGATTCAAAGTTAGCTTGCAGACTAAAAATATACC
AAGTTGACGGTTATATGATGAGTCTGTTGGTGAAAGATGAACTTCTATTT
CGAGATTGCTTACTGAGCTTGGGAGAATTGCAAACGTTGAGAGAATCGTT
TTATCCGATACGAACCCGATGTGATGCAGTCGGGGAACACGATTTAAAAG
AGAAATTCGAAGAACATTCTCATATGTTGTaaagggtttttttcttttaa
ggaATTCTGAATGATCTCCGATTCTGGCgcccagagccacttgcaccacA
TTATggttttactgatggacgtgatgCAATTGTAAGCGCTATCagaataa
acacccctgtctcacagccccactggaacttttttcctaagtggggataa
aattcctattgaaattccaattgGGATAGAGATTCAAagattgttccaag
gttaaaaaacccagtggggatggttttagagtgtaatttttaaacatgga
atttcgagtggggatgaaatcaaagtcgatttcccagtggggctgaaatt
caagggtattttcccatcgggcttttttccagtgggactggGGTCCCAAC
GGGTCTGTTACACAGGGGTGTAGAGTAATACGAAAGCGGGTTAAAGTTAG
AAAACCCTTCAATCGACTCGGAGAAAAACTACCAGAAAGGTCCAGATAAA
CACATAATAGGGAGACTAGATTAGAGTTTAACAGGAGATATATCATATGC
AACGAATTCAAGATAATCGAGGTCAACATTTCTTGTTAAACTCTTACCCA
GTCTATTTAAAGATAGACCGGAGCGTCATTTTGAGCTTTCGTTTTACATA
TTCTTTAATAtacattttcaagatattttaaaaatcataattAGAAATTA
CAATGTAAATAAtattaagaaaaattaaaattttgtcaacaattaaattt
catttcacGAATCTATAGTCGAGTCCTCTCAAACAGGGGTTATCCTTTAC
CGATTCTATCTCAGCCTCCAAATTCATGTTTCTTTAGGAAATATGGAATA
AACCATTGAAGCCACTTTGAAAAACCAGGaaatattgcaaaaattgaATG
GAATACTGTATAAAAATTGCCTAAGAGCAAACATTACAACTTGGATGACT
GAGACATTTCATCCCTATTCActctttttgtataagaactAGTAACAATT
GCTATTATTTTGACACTTTAAGCCTCAAATTATTCATATCATGTtcaagt
ctattcacgataagtgtgcactctttttcttttacctataacttttgaag
gaattcttcaatctttataaatttggtatcatcggaaagatattagtgag
tggaacaatttgaaataaaaagatctttaaaagaattctaaaaatgaaga
tgaaaatgaagaagaaaaaaatgaagatcttgtagaaaagtgctataact
ttcattttcactggagagattctttgatcttaggagattatcactgtgaa
gaaattttattaaaatacttattaaatataaagttatgatacaaagttaa
taagtgattgaccccaaaaaaacagcaaaaaactgcagaaaacagcattt
ttagacgtcaatcagcttataactttgtttgatatcttttgactgaaggA
TTCACCTCAGTAATCcatccactcactaatatctttcccatgataccaaa
tttttgaagattgaagaattccgtcaaaagttataggtaaaagaaaaaag
agtgcacacttatcgtgaatagactttaattaaAGTGTGAAATCAGGATA
TCATAGGCTTTACATTCaaattttactactttgacccctaaattgcttaa
aattgagtaattctaggcttagcattgttcttaaattgttctcatttttc
gaacctcataattcttataaaattttcttataaaaataagagTTTAATCT
TGATATCATTGTCTCCTTTGTAAGTCACAGTGGAAGCAAAGAAACGTATT
TTTTGTTAGTAaaaccatataagaacataaggcggcttcgatggccaaat
tgttaagaatatgttaagatccttttaaggctttgtagactctaGAACAC
CTGGgtccttaggaaaatggacaaaaatactcacaaaatggtgaaaataa
gaacatggtaagaacatttttaggcttagagctcaaaaagtttttggatg
ttcttataaaaaaacgtgtacacaataaaaaacatcaaagcaTCTCATCG
TCCATTGGAAAGTAAGTAGTAAGTGTGCGACCGCTTTTAGGGTGTAACCC
AGAGGTTTCCTTTTATTTTAATCCGTCTATTTAATTGCTATGCATCAAGC
CGAGAATATCAACGAGTACAATTTCAGGAATGACCCTTAACCTTGCACAC
CGTACgtggatgctctacctttatgCTTGCGGCCAATTGAATAACTCTTT
TAAATAAAGAACAAAAGATATCTATTTACACTTTTTTACATTTCCCAATC
AATAAAGCCAACAGTCAAAAATGCAACAATCTTGACAGCAACAGTTAGGT
ACATAGCTAAActtggtcaaatttttcaatattttctcttGTTAAACGTG
TGTTCTCAACGTTTTTAATTTGAGGTAGAACCATGTGACGTGTTCCGCCT
TGGAATGAAGCTTCGTGAGATTTCTTCTCTCGCAACTCAATACTCGGTGT
TCCATCGTCTAAACTATTGAAATAATATCGAAGTCGACTTTCCTGTAACG
TGTTTTTACGAGATACATTTTTACGAGAATAGTCGGAATCGGTACCGAAT
GACAATGATCGGCTTTTTCCATTCCGACAAATTACCGAAGTCGAATCGTC
GGTAAGAATACATTTTGTCTCATCGTTTGAAACTCGGCTGTATCCTGATA
CAGAAACCTCGGCTATTGACGGCGATTCTCGGTAAAACGAACTTGATGAA
TCGGAAGAAGACATTAAGATATCGTCAGAAAATACCGACGACGATTTTTG
TAAGAATCCTCGTGGACGATTTCCGACAACACTGTCTTGTGACATAGCTC
TTCTTGATAGTAAACGCCTTGGTGTAGAACACGTTTGGGGCGACATGCTG
GGCGGGATCGGGGTTGATCGACGTTTCGGTCGCAAAGACATGATTGCGAG
GAAGATTTATTCTTCCAgaaatttatgatgaaattttatcactttttttg
ctaaaaC Run BLAST on NCBI protein sequence of TCONS_00064546-protein >TCONS_00064546-protein ID=TCONS_00064546-protein|Name=TCONS_00064546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
VHLERAMSIKELWYTTLTKKFSKRVRNTIKKNIYTVGSGSYDIEKARHSG
YVDMFNYDDYDHVTMDDVIDETMTSSSFQPKKKSDASKYQCKSNDVKSRY
QYKSDVVNLRHDYKSDVVIHVTDTTHYDIPKLQPLEDDFDVHPAMDSEHF
YDVPKAIMHGHHDTPNIKKRQRKTNNARKNRDFHLNVPDRDSMVSGRYQR
LVLRKKKELKKQQRRSRINELYENVESGSDSDSDMTDSEDDISGTDSPYE
DYYDMYTPLDGCHDQNEKPEFYGRFFSHTLTRDKERLSTGFQRSNFKRSV
HRSVNVKFEFKKSNTKLVNTLNRDNPLKKTFDKVKLLATDDWLFELDESK
LALELKIRNGLESRILYHHLRGWKPKNGFRASAWKDKFAEDLTVYELFLF
ISGNCDSKLACRLKIYQVDGYMMSLLVKDELLFRDCLLSLGELQTLRESF
YPIRTRCDAVGEHDLKEKFEEHSHML Run BLAST on NCBI transcript from alignment at scaffold_419:156962..161726+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064546 ID=TCONS_00064546|Name=TCONS_00064546|organism=Clytia hemisphaerica|type=transcript|length=4765bp|location=Sequence derived from alignment at scaffold_419:156962..161726+ (Clytia hemisphaerica)
GGTGCATTTAGAAAGAGCAATGTCGATCAAAGAGCTTTGGTATACAACTC
TTACGAAGAAATTCTCAAAAAGAGTTCGAAACACCATCAAAAAGAATATC
TACACCGTCGGTAGTGGAAGTTATGACATTGAAAAAGCACGACACAGCGG
ATATGTCGACATGTTCAATTACGACGATTATGATCACGTGACTatggatg
acgtcatcgatgagaCAATGACATCATCTTCATTTCAACCGAAGAAAAAA
AGCGATGCATCAAAGTATCAGTGTAAAAGTAATGACGTCAAAAGTCGTTA
CCAGTATAAATCTGACGTCGTCAATTTACGTCACGATTATAAGTCGGATG
TTGTCATACACGTCACTGACACTACACATTACGATATTCCGAAATTACAA
CCTCTTGAAGATGATTTTGACGTTCATCCTGCAATGGATTCTGAGCACTT
TTATGACGTTCCAAAAGCAATCATGCACGGCCATCACGACACACCAAACA
TAAAAAAACGTCAACGGAAAACAAACAACGCCAGAAAAAACCGAGATTTT
CATTTGAACGTTCCTGACCGGGATAGCATGGTTTCTGGAAGATATCAACG
TTTGGTTTTACGTAAAAAGAAAGAATTAAAGAAACAACAGCGTAGAAGTC
GTATAAATGAACTTTACGAAAACGTCGAAAGTGGATCCGACTCCGACAGT
GATATGACGGATTCTGAGGACGACATTTCCGGTACTGATAGTCCGTATGA
AGATTATTACGACATGTATACGCCGTTAGATGGATGTCATGATCAGAATG
AAAAACCTGAGTTTTACGGACGTTTCTTCAGTCATACCTTAACACGTGAC
AAAGAGAGGCTAAGTACAGGTTTTCAGAGAAGCAATTTCAAGCGTAGTGT
ACATAGGTCCGTAAACGTCAAATTCGAATTCAAGAAAAGCAATACCAAGT
TAGTAAACACACTAAACAGAGATAACccattgaaaaaaacttttgataaa
gTCAAACTGTTGGCAACTGATGATTGGCTTTTCGAGCTTGATGAATCCAA
GTTGGCCTTAGAACTAAAAATACGGAATGGTCTTGAAAGCAGGATCTTGT
ACCACCATTTGAGAGGCTGGAAACCTAAAAATGGTTTCCGTGCCTCAGCC
TGGAAAGACAAATTCGCAGAGGATTTGACAGTGTACGAACTATTTTTATT
CATATCTGGTAATTGTGATTCAAAGTTAGCTTGCAGACTAAAAATATACC
AAGTTGACGGTTATATGATGAGTCTGTTGGTGAAAGATGAACTTCTATTT
CGAGATTGCTTACTGAGCTTGGGAGAATTGCAAACGTTGAGAGAATCGTT
TTATCCGATACGAACCCGATGTGATGCAGTCGGGGAACACGATTTAAAAG
AGAAATTCGAAGAACATTCTCATATGTTGTaaagggtttttttcttttaa
ggaATTCTGAATGATCTCCGATTCTGGCgcccagagccacttgcaccacA
TTATGGTTTTACTAATGGACGTGATACAATggtgagcgctatcagaataa
acacccctgtcttacagctccactggaacttttttcctcaatgAGGATAA
AATTCCTGTTGAAATTCCAATTGGAATAgagattctattgttccaaggtg
gggatggttttagagtgTAACTTTTTAAACATGNATTCAAAAGTTGAGAG
AATCGTTTTATCCGATACGAACCCGATGTGATGCAATCGGGGAACACGAT
TTAAAAGAGaaattctaagaacattctcaTGTGTTGtaaaggattttttt
tctttcaaggaATTCTGAACGATCTTCCATTCTGGTGCCCAGAGCAACTT
GCACCACATTATggttttactgatggacgtgatgCAATTGTAAGCGCTAT
Cagaataaacacccctgtctcacagccccactggaacttttttcctaagt
ggggataaaattcctattgaaattccaattgGGATAGAGATTCAAagatt
gttccaaggttaaaaaacccagtggggatggttttagagtgtaattttta
aacatggaatttcgagtggggatgaaatcaaagtcgatttcccagtgggg
ctgaaattcaagggtattttcccatcgggcttttttccagtgggactggG
GTCCCAACGGGTCTGTTACACAGGGGTGTAGAGTAATACGAAAGCGGGTT
AAAGTTAGAAAACCCTTCAATCGACTCGGAGAAAAACTACCAGAAAGGTC
CAGATAAACACATAATAGGGAGACTAGATTAGAGTTTAACAGGAGATATA
TCATATGCAACGAATTCAAGATAATCGAGGTCAACATTTCTTGTTAAACT
CTTACCCAGTCTATTTAAAGATAGACCGGAGCGTCATTTTGAGCTTTCGT
TTTACATATTCTTTAATAtacattttcaagatattttaaaaatcataatt
AGAAATTACAATGTAAATAAtattaagaaaaattaaaattttgtcaacaa
ttaaatttcatttcacGAATCTATAGTCGAGTCCTCTCAAACAGGGGTTA
TCCTTTACCGATTCTATCTCAGCCTCCAAATTCATGTTTCTTTAGGAAAT
ATGGAATAAACCATTGAAGCCACTTTGAAAAACCAGGaaatattgcaaaa
attgaATGGAATACTGTATAAAAATTGCCTAAGAGCAAACATTACAACTT
GGATGACTGAGACATTTCATCCCTATTCActctttttgtataagaactAG
TAACAATTGCTATTATTTTGACACTTTAAGCCTCAAATTATTCATATCAT
GTtcaagtctattcacgataagtgtgcactctttttcttttacctataac
ttttgaaggaattcttcaatctttataaatttggtatcatcggaaagata
ttagtgagtggaacaatttgaaataaaaagatctttaaaagaattctaaa
aatgaagatgaaaatgaagaagaaaaaaatgaagatcttgtagaaaagtg
ctataactttcattttcactggagagattctttgatcttaggagattatc
actgtgaagaaattttattaaaatacttattaaatataaagttatgatac
aaagttaataagtgattgaccccaaaaaaacagcaaaaaactgcagaaaa
cagcatttttagacgtcaatcagcttataactttgtttgatatcttttga
ctgaaggATTCACCTCAGTAATCcatccactcactaatatctttcccatg
ataccaaatttttgaagattgaagaattccgtcaaaagttataggtaaaa
gaaaaaagagtgcacacttatcgtgaatagactttaattaaAGTGTGAAA
TCAGGATATCATAGGCTTTACATTCaaattttactactttgacccctaaa
ttgcttaaaattgagtaattctaggcttagcattgttcttaaattgttct
catttttcgaacctcataattcttataaaattttcttataaaaataagag
TTTAATCTTGATATCATTGTCTCCTTTGTAAGTCACAGTGGAAGCAAAGA
AACGTATTTTTTGTTAGTAaaaccatataagaacataaggcggcttcgat
ggccaaattgttaagaatatgttaagatccttttaaggctttgtagactc
taGAACACCTGGgtccttaggaaaatggacaaaaatactcacaaaatggt
gaaaataagaacatggtaagaacatttttaggcttagagctcaaaaagtt
tttggatgttcttataaaaaaacgtgtacacaataaaaaacatcaaagca
TCTCATCGTCCATTGGAAAGTAAGTAGTAAGTGTGCGACCGCTTTTAGGG
TGTAACCCAGAGGTTTCCTTTTATTTTAATCCGTCTATTTAATTGCTATG
CATCAAGCCGAGAATATCAACGAGTACAATTTCAGGAATGACCCTTAACC
TTGCACACCGTACgtggatgctctacctttatgCTTGCGGCCAATTGAAT
AACTCTTTTAAATAAAGAACAAAAGATATCTATTTACACTTTTTTACATT
TCCCAATCAATAAAGCCAACAGTCAAAAATGCAACAATCTTGACAGCAAC
AGTTAGGTACATAGCTAAActtggtcaaatttttcaatattttctcttGT
TAAACGTGTGTTCTCAACGTTTTTAATTTGAGGTAGAACCATGTGACGTG
TTCCGCCTTGGAATGAAGCTTCGTGAGATTTCTTCTCTCGCAACTCAATA
CTCGGTGTTCCATCGTCTAAACTATTGAAATAATATCGAAGTCGACTTTC
CTGTAACGTGTTTTTACGAGATACATTTTTACGAGAATAGTCGGAATCGG
TACCGAATGACAATGATCGGCTTTTTCCATTCCGACAAATTACCGAAGTC
GAATCGTCGGTAAGAATACATTTTGTCTCATCGTTTGAAACTCGGCTGTA
TCCTGATACAGAAACCTCGGCTATTGACGGCGATTCTCGGTAAAACGAAC
TTGATGAATCGGAAGAAGACATTAAGATATCGTCAGAAAATACCGACGAC
GATTTTTGTAAGAATCCTCGTGGACGATTTCCGACAACACTGTCTTGTGA
CATAGCTCTTCTTGATAGTAAACGCCTTGGTGTAGAACACGTTTGGGGCG
ACATGCTGGGCGGGATCGGGGTTGATCGACGTTTCGGTCGCAAAGACATG
ATTGCGAGGAAGATTTATTCTTCCAgaaatttatgatgaaattttatcac
tttttttgctaaaaC Coding sequence (CDS) from alignment at scaffold_419:156962..161726+ >TCONS_00064546 ID=TCONS_00064546|Name=TCONS_00064546|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_419:156962..161726+ (Clytia hemisphaerica)
GTGCATTTAGAAAGAGCAATGTCGATCAAAGAGCTTTGGTATACAACTCT
TACGAAGAAATTCTCAAAAAGAGTTCGAAACACCATCAAAAAGAATATCT
ACACCGTCGGTAGTGGAAGTTATGACATTGAAAAAGCACGACACAGCGGA
TATGTCGACATGTTCAATTACGACGATTATGATCACGTGACTatggatga
cgtcatcgatgagaCAATGACATCATCTTCATTTCAACCGAAGAAAAAAA
GCGATGCATCAAAGTATCAGTGTAAAAGTAATGACGTCAAAAGTCGTTAC
CAGTATAAATCTGACGTCGTCAATTTACGTCACGATTATAAGTCGGATGT
TGTCATACACGTCACTGACACTACACATTACGATATTCCGAAATTACAAC
CTCTTGAAGATGATTTTGACGTTCATCCTGCAATGGATTCTGAGCACTTT
TATGACGTTCCAAAAGCAATCATGCACGGCCATCACGACACACCAAACAT
AAAAAAACGTCAACGGAAAACAAACAACGCCAGAAAAAACCGAGATTTTC
ATTTGAACGTTCCTGACCGGGATAGCATGGTTTCTGGAAGATATCAACGT
TTGGTTTTACGTAAAAAGAAAGAATTAAAGAAACAACAGCGTAGAAGTCG
TATAAATGAACTTTACGAAAACGTCGAAAGTGGATCCGACTCCGACAGTG
ATATGACGGATTCTGAGGACGACATTTCCGGTACTGATAGTCCGTATGAA
GATTATTACGACATGTATACGCCGTTAGATGGATGTCATGATCAGAATGA
AAAACCTGAGTTTTACGGACGTTTCTTCAGTCATACCTTAACACGTGACA
AAGAGAGGCTAAGTACAGGTTTTCAGAGAAGCAATTTCAAGCGTAGTGTA
CATAGGTCCGTAAACGTCAAATTCGAATTCAAGAAAAGCAATACCAAGTT
AGTAAACACACTAAACAGAGATAACccattgaaaaaaacttttgataaag
TCAAACTGTTGGCAACTGATGATTGGCTTTTCGAGCTTGATGAATCCAAG
TTGGCCTTAGAACTAAAAATACGGAATGGTCTTGAAAGCAGGATCTTGTA
CCACCATTTGAGAGGCTGGAAACCTAAAAATGGTTTCCGTGCCTCAGCCT
GGAAAGACAAATTCGCAGAGGATTTGACAGTGTACGAACTATTTTTATTC
ATATCTGGTAATTGTGATTCAAAGTTAGCTTGCAGACTAAAAATATACCA
AGTTGACGGTTATATGATGAGTCTGTTGGTGAAAGATGAACTTCTATTTC
GAGATTGCTTACTGAGCTTGGGAGAATTGCAAACGTTGAGAGAATCGTTT
TATCCGATACGAACCCGATGTGATGCAGTCGGGGAACACGATTTAAAAGA
GAAATTCGAAGAACATTCTCATATGTTGTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064546-exon-scaffold_419-1491911889:156962..158460 | TCONS_00064546-exon-scaffold_419-1491911889:156962..158460 | Clytia hemisphaerica | exon |
| TCONS_00064546-exon-scaffold_419-1510915933:156962..158460 | TCONS_00064546-exon-scaffold_419-1510915933:156962..158460 | Clytia hemisphaerica | exon |
| TCONS_00064546-exon-scaffold_419-1575043694:156962..158460 | TCONS_00064546-exon-scaffold_419-1575043694:156962..158460 | Clytia hemisphaerica | exon |
| TCONS_00064546-exon-scaffold_419-1491911889:158819..161726 | TCONS_00064546-exon-scaffold_419-1491911889:158819..161726 | Clytia hemisphaerica | exon |
| TCONS_00064546-exon-scaffold_419-1510915933:158819..161726 | TCONS_00064546-exon-scaffold_419-1510915933:158819..161726 | Clytia hemisphaerica | exon |
| TCONS_00064546-exon-scaffold_419-1575043694:158819..161726 | TCONS_00064546-exon-scaffold_419-1575043694:158819..161726 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:156962..161726 + |
Blast
The following BLAST results are available for this feature:
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