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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064556 ID=TCONS_00064556|Name=TCONS_00064556|organism=Clytia hemisphaerica|type=transcript|length=716bp
TCGATTCTCCCCTACAGATGTAAACCCACCCGTaattttatgaaaaggtc
ttttAAGTATTGCGAGCTCCTAAGGGGGTATCACAATTTAATATAGGGTC
AAACAATTGTTTCATTGCATCACATGAGAATTCATTGTATACATTTTATT
CATACTGGGAATTATCTTTTTTGTCTTCTTGACTGTCTCATGGGAATATT
GTTCAACATTGGTTTGCTCTCCCAAGAGAGCAGTATATTGACAAGACCAA
CTGGTATAAAGTATAAAAAGAGTAGAATGACGCTCTTCGACAATCACAAT
ACAAGAACACGAGGTGCTGTTAGAAAACTTGTAACAGTCTAAAGATGAAG
GTTTTCACCACAACAATTTTGATCCTTTTGGTCAACATCTCCATGCTGGA
AACAAGATCCATCAGTGATAAAGAATTAATTGACCTCCTTAAGGATGCCT
TGAACCGAGACGCCCAAgcacccaagtcgttcgtccaaggtggagacgcc
caaggacccaagtcgttcgtccaaggtggagacgctcaaggacccaagtc
gttcgtccaaggtggagacgctcaaggacccaagtcgttcatccaaggtg
gagacgcccaaggacccaagtcgttcgtccaaggtggagatGTTAAATAT
CCCTTCACAGATTATACAGGACCTTACGACGCGAAACAAACCAAAACCGA
ACGGAGTGATAAGAAG Run BLAST on NCBI protein sequence of TCONS_00064556-protein >TCONS_00064556-protein ID=TCONS_00064556-protein|Name=TCONS_00064556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MKVFTTTILILLVNISMLETRSISDKELIDLLKDALNRDAQAPKSFVQGG
DAQGPKSFVQGGDAQGPKSFVQGGDAQGPKSFIQGGDAQGPKSFVQGGDV
KYPFTDYTGPYDAKQTKTERSDKK Run BLAST on NCBI transcript from alignment at scaffold_419:171199..172524- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064556 ID=TCONS_00064556|Name=TCONS_00064556|organism=Clytia hemisphaerica|type=transcript|length=1326bp|location=Sequence derived from alignment at scaffold_419:171199..172524- (Clytia hemisphaerica)
TCGATTCTCCCCTACAGATGTAAACCCACCCGTAATTTTATGAAAAGGTC
TTTTAAGTATTGCGAGCTCCTAAGGGGGTATCACAATTTAATATAGGGTC
AAACAATTGTTTCATTGCATCACATGAGAATTCATTGTATACATTTTATT
CATACTGGGAATTATCTTTTTTGTCTTCTTGACTGTCTCATGGGAATATT
GTTCAACATTGGTTTGCTCTCCCAAGAGAGCAGTATATTGACAAGACCAA
CTGGTATAAAGTATAAAAAGAGTAGAATGACGCTCTTCGACAATCACAAT
ACAAGAACACGAGGTGCTGTTAGAAAACTTGTAACAGTCTAAAGATGAAG
GTTTTCACCACAACAATTTTGATCCTTTTGGTCAACATCTCCATGCTGGA
AACAAGATCCATCAGTGATAAAGAATTAAGTAAGTCACTCACAAATCTCA
AATGCTTGCTTCAAATACTTCTTTCTTTCTTTCAGGGTCATGCCTCCTGT
CTTTGAACTAATAAACATTATTGATAAGCTATCTAACATGAATTCTGGTT
ATTTTTTGGTGTGTAAATCGGATGTCTTGGGAGATATTCAATGAACCGGT
TAAGAATCTTTTTATGAGCCGTTATTTCATCTAAATTTCTTTCGTTTTTG
TCTGCAAGTACACCCCCTTCTCACAGACCCACTGGCACCCTTCTTTCCTG
GAGAAATTGGCCAAAATAACGTTTCTGATGGAAAATTATACCAATTTTTT
TTCAAACTGAAAAAAAACTAAAACCAATCCTCACTGAAAAATACTAGGCT
ATTTTTCCCATACCAACTGAATTTTTTGACTTAAAACAACAACAAAAAAT
TTAAATCCCTGGTCATAAAAAGTAGGGGAATATTAATTCCCAAAGAGCTT
CAGTTCGTCATTTTCACCCCCACTGGCTGAAAAAATTCTGCGGGTCTGTG
AGGAGGGGGCCTGCAGGCGTCTGTCAGACACCTTCCTAGAAACATGTTGA
CTCTAGCTCATCCTTTAATTGCGTTTTCTTCCTTTTCAGTTGACCTCCTT
AAGGATGCCTTGAACCGAGACGCCCAAGCACCCAAGTCGTTCGTCCAAGG
TGGAGACGCCCAAGGACCCAAGTCGTTCGTCCAAGGTGGAGACGCTCAAG
GACCCAAGTCGTTCGTCCAAGGTGGAGACGCTCAAGGACCCAAGTCGTTC
ATCCAAGGTGGAGACGCCCAAGGACCCAAGTCGTTCGTCCAAGGTGGAGA
TGTTAAATATCCCTTCACAGATTATACAGGACCTTACGACGCGAAACAAA
CCAAAACCGAACGGAGTGATAAGAAG Coding sequence (CDS) from alignment at scaffold_419:171199..172524- >TCONS_00064556 ID=TCONS_00064556|Name=TCONS_00064556|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_419:171199..172524- (Clytia hemisphaerica)
TTGACCTCCTTAAGGATGCCTTGAACCGAGACGCCCAAGCACCCAAGTCG
TTCGTCCAAGGTGGAGACGCCCAAGGACCCAAGTCGTTCGTCCAAGGTGG
AGACGCTCAAGGACCCAAGTCGTTCGTCCAAGGTGGAGACGCTCAAGGAC
CCAAGTCGTTCATCCAAGGTGGAGACGCCCAAGGACCCAAGTCGTTCGTC
CAAGGTGGAGATGTTAAATATCCCTTCACAGATTATACAGGACCTTACGA
CGCGAAACAAACCAAAACCGAACGGAGTGATAAGAAGATGAAGGTTTTCA
CCACAACAATTTTGATCCTTTTGGTCAACATCTCCATGCTGGAAACAAGA
TCCATCAGTGATAAAGAATTAATTGACCTCCTTAAGGATGCCTTGAACCG
AGACGCCCAAGCACCCAAGTCGTTCGTCCAAGGTGGAGACGCCCAAGGAC
CCAAGTCGTTCGTCCAAGGTGGAGACGCTCAAGGACCCAAGTCGTTCGTC
CAAGGTGGAGACGCTCAAGGACCCAAGTCGTTCATCCAAGGTGGAGACGC
CCAAGGACCCAAGTCGTTCGTCCAAGGTGGAGATGTTAAATATCCCTTCA
CAGATTATACAGGACCTTACGACGCGAAACAAACCAAAACCGAACGGAGT
GATAAGAAGATGAAGGTTTTCACCACAACAATTTTGATCCTTTTGGTCAA
CATCTCCATGCTGGAAACAAGATCCATCAGTGATAAAGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064556-exon-scaffold_419-1575043694:172096..172524 | TCONS_00064556-exon-scaffold_419-1575043694:172096..172524 | Clytia hemisphaerica | exon |
| TCONS_00064556-exon-scaffold_419-1575043694:171199..171485 | TCONS_00064556-exon-scaffold_419-1575043694:171199..171485 | Clytia hemisphaerica | exon |
| TCONS_00064556-exon-scaffold_419-1510915933:172096..172524 | TCONS_00064556-exon-scaffold_419-1510915933:172096..172524 | Clytia hemisphaerica | exon |
| TCONS_00064556-exon-scaffold_419-1510915933:171199..171485 | TCONS_00064556-exon-scaffold_419-1510915933:171199..171485 | Clytia hemisphaerica | exon |
| TCONS_00064556-exon-scaffold_419-1491911889:172096..172524 | TCONS_00064556-exon-scaffold_419-1491911889:172096..172524 | Clytia hemisphaerica | exon |
| TCONS_00064556-exon-scaffold_419-1491911889:171199..171485 | TCONS_00064556-exon-scaffold_419-1491911889:171199..171485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:171199..172524 - |
Blast
The following BLAST results are available for this feature:
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