TCONS_00064578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064578
Unique NameTCONS_00064578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064578 ID=TCONS_00064578|Name=TCONS_00064578|organism=Clytia hemisphaerica|type=transcript|length=2593bp
CTAGATTCAAacctatattttcaaaatattaaatttataGTTCAGAATGG
TAAATGTCAGCCCAAGTGACAAAATCCCACTTTATGAGGGCGAAGACACC
CATAAAGGGAGAGCAATGCCAGAATGCAGTCACACGTTTTTATNAATGTC
AGCCCAAGTGACAAAATCCCACTTTATGAGGGCGAAGACACCCATAAAGG
GAGAGCAATGCCAGAATGCAGTCACACGTTTTTATACTACTTTAAAAAGA
TTTGTTATACACATTTACCAATACTGACCTGGCTTCCAAAAtataattta
cataatttacAATGTGATCTTATTGCTGGGATAACAGTTGGTTTGATGGT
TGTACCTCAAGCATTAGCATATGCTTCCATTGCTAGATTAAGTAATGAGT
ATGGTTTGTTTTCTTCATTCATGGGAGTTTTTGTTTACACTCTGTTTGGG
ACATCAAAAGATGTCACTATTGGTCCTACAGCTATTTTATCATTGATGAC
CGCTAGTTATAATGTTCCTCATTGTGTTGACACTGCAGTTGTTTTATCAC
TGTATGTTGGTATTATTTTACTATTGATGGGCATTTTTCGACTTGGTTTT
CTGGTGAGATTTGTATCTGTTCCTGTTATTTCAGCGTTTACATCAGCTGC
AGCTCTGACCATAGCTTGTGGTCAATTAAAAGATTGGAATGGCTTGGAAC
ACGTCCCTAGAGACTTCTTTGGTAACTTAACCTATATTTTTAAACACATT
AAGGAATGGAATACCTATGATTTAGTGTATGGTTTAGTATGTGTTGTAGT
TTTATGTTTGATGAGGCTGTTGCCACGTTTGAATCGCGTGCAAGAAGACA
CACCAAGCTATTCACGCCTTCTTCGAAAAGTTGCTTGGTTCTGTGGTATT
GGTAAAAATGCAATCGTGGTCATTTTTTCGTGCCTACTGATGTACATCTT
CTCAATCTACAAAATCAATCATGATTTCACCCTTATTGAAAATATCAATG
CTGGTTTACCACCTTTCAAAcCACCAGTGTTTCCCTTACATTGTGATATC
AACAAGACGATCATAGATGATGATTTACCTCAATCAATATCAGTTGTATC
CTTCACAGAAAGCGTTAAATATTTCAGTACTGGCCTAGCTGTCATTCCTT
TACTAGCATTTATGGAAGCAATGGCTATTGGGAAAGCATTTGGTCGTATA
AACAATTACAAGATCATACCAACACAAGAGTTGGTTGCTTTAGGGGTGGC
AAACCTGGCTGGTTGTTTTGTTTCAGCCTATCCAGTCACCGGTAGTTTTT
CCAGGACAGCAGTCAATTCTCAAAGTGGTGTCAAAACTCCTTTGTCTGGT
ATATTCTCTGGTACCATCGTTGTGCTTGCTACACAATATCTGACGCAGTA
TTTCCACTACATTCCGAAAGCATGTCTTGGATCCGTCATTATTTGCGCAG
TCATCAACATGGTAGATCTAAACATAGTTCGATCCATATGGAAAGTCAAC
AAAATCGACCTCATCCCATACACAATCACTTTCTTAGCCTGTTTTTACAC
ACTTGAAACAGGTTTGATCCTTGGTATTGCATCCAGTCTAATCTTATTAT
TAAAATCAAGCGTCAGCCCACCATTACGCGTAGAACAAGGCGATGTGCAG
GTCATCACAGTTCAAAACGGAGTCTTGTATCCTGGCATTGAGAAAATAGT
AAACAAAGTTGACGAATTGTTTAGCCTGAGTTCCTTACCCTCTGCTATAG
TGTTAGACTTGAAaaatgttgttgaaattgattacACAGTAGCTGCAGAG
CTTCACGAGCTTGTCTTGCAGTTGAGAAAATGTGTGAAACAAGACACCGA
TTTTTGGATTATCAATGCTAATTTTcaagtgaagaaaattttgttgttgt
CTAATATGCAAGACACTTTGACAACTTGGGAACATTTGCAAGAGAGCTAT
GCTGGTGCACGGAGGAACTCCCTTCCTTCAATGACATGATCGCTGTCGTA
CACGTTTTTATTAGAAatgtagaaaatttttttcgagtcTCGGAGGTTCT
AACTTTTTGGAAACTTGAaacctcaaattgttcttatcttgttcttgTTA
CTTCAACTTGGAGTGCTTTAGGCTTCTTACCTTATTTTTGAAATGCAGCC
ATTGCAGACTCAAAGTTGTTCTTAAACGATCCTTATCCTTTGACATTTTT
AAGcctcgggttttttttttgattaaaaagaatttacCTTTTCATTCTGA
AATTCTTTGTCTGACGTCTGTTCAGTCTGAAATCTTCAATTGAAACGTAT
TTCTGTAAACTTAAGCTGTTTCTCACATGTATTGTtataaaaattagaat
tttgaatGAGGTCACCAAACCTTACAAAATGTTATCTCGAAGATTTCGTA
GAAATTCGTAGAGGTTTTCCGGGAGCCCTTGTATAACTATGACCTTTAGG
CTTATTAAAAGGTGGATTTCAGCAGAGGATTGGAAAATACGAGTTAAAAg
gcacgagttaaaaaacacgagttacaaaaaacacgagttacgttaaatgt
gacgtcatcaatgggaaattatgacgtcacaagtagataattt
Run BLAST on NCBI

protein sequence of TCONS_00064578-protein

>TCONS_00064578-protein ID=TCONS_00064578-protein|Name=TCONS_00064578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=621bp
MQSHVFXNVSPSDKIPLYEGEDTHKGRAMPECSHTFLYYFKKICYTHLPI
LTWLPKYNLHNLQCDLIAGITVGLMVVPQALAYASIARLSNEYGLFSSFM
GVFVYTLFGTSKDVTIGPTAILSLMTASYNVPHCVDTAVVLSLYVGIILL
LMGIFRLGFLVRFVSVPVISAFTSAAALTIACGQLKDWNGLEHVPRDFFG
NLTYIFKHIKEWNTYDLVYGLVCVVVLCLMRLLPRLNRVQEDTPSYSRLL
RKVAWFCGIGKNAIVVIFSCLLMYIFSIYKINHDFTLIENINAGLPPFKP
PVFPLHCDINKTIIDDDLPQSISVVSFTESVKYFSTGLAVIPLLAFMEAM
AIGKAFGRINNYKIIPTQELVALGVANLAGCFVSAYPVTGSFSRTAVNSQ
SGVKTPLSGIFSGTIVVLATQYLTQYFHYIPKACLGSVIICAVINMVDLN
IVRSIWKVNKIDLIPYTITFLACFYTLETGLILGIASSLILLLKSSVSPP
LRVEQGDVQVITVQNGVLYPGIEKIVNKVDELFSLSSLPSAIVLDLKNVV
EIDYTVAAELHELVLQLRKCVKQDTDFWIINANFQVKKILLLSNMQDTLT
TWEHLQESYAGARRNSLPSMT
Run BLAST on NCBI

transcript from alignment at scaffold_419:368349..372035-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064578 ID=TCONS_00064578|Name=TCONS_00064578|organism=Clytia hemisphaerica|type=transcript|length=3687bp|location=Sequence derived from alignment at scaffold_419:368349..372035- (Clytia hemisphaerica)
CTAGATTCAAACCTATATTTTCAAAATATTAAATTTATAGTTCAGAATGG
TAAATGTCAGCCCAAGTGACAAAATCCCACTTTATGAGGGCGAAGACACC
CATAAAGGGAGAGCAATGCCAGAATGCAGTCACACGTTTTTATNAATGTC
AGCCCAAGTGACAAAATCCCACTTTATGAGGGCGAAGACACCCATAAAGG
GAGAGCAATGCCAGAATGCAGTCACACGTTTTTATACTACTTTAAAAAGA
TTTGTTATACACATTTACCAATACTGACCTGGCTTCCAAAATATAATTTA
CATAATTTACAATGTGATCTTATTGCTGGGATAACAGTTGGTTTGATGGT
TGTACCTCAAGCATTAGCATATGCTTCCATTGCTAGATTAAGTAATGAGT
ATGGTTTGTTTTCTTCATTCATGGGAGTTTTTGTTTACACTCTGTTTGGG
ACATCAAAAGATGTCACTATTGGTCCTACAGCTATTTTATCATTGATGAC
CGCTAGTTATAATGTTCCTCATTGTGTTGACACTGCAGTTGTTTTATCAC
TGTATGTTGGTATTATTTTACTATTGATGGGCATTTTTCGACTTGGTTTT
CTGGTGAGATTTGTATCTGTTCCTGTTATTTCAGCGTTTACATCAGCTGC
AGCTCTGACCATAGCTTGTGGTCAATTAAAAGATTGGAATGGCTTGGAAC
ACGTCCCTAGAGACTTCTTTGGTAACTTAACCTATATTTTTAAACACATT
AAGGAATGGAATACCTATGATTTAGTGTATGGTTTAGTATGTGTTGTAGT
TTTATGTTTGATGAGGCTGTTGCCACGTTTGAATCGCGTGCAAGAAGACA
CACCAAGCTATTCACGCCTTCTTCGAAAAGTTGCTTGGTTCTGTGGTATT
GGTAAAAATGCAATCGTGGTCATTTTTTCGTGCCTACTGATGTACATCTT
CTCAATCTACAAAATCAATCATGATTTCACCCTTATTGAAAATATCAATG
CTGGTTTACCACCTTTCAAAGTAAGNTACTGATGTACATCTTCTCAATCT
ACAAAATCAATCATGATTTCACCCTTATTGAAAATATCAATGCTGGTTTA
CCACCTTTCAAAGTAAGTGTCATATACAGATTTTCATTATTATTATTTTT
TTTTTTTAGAAAAAGTCAAAAGAAATGCTTTACTTCATGAAGCCTAATAA
CACTTTGCCATTGCTCATATGCAATTGTGTCTTTTAAATATGAGCATTTT
ACGCCCTTTTCTCAGATCTCCCTCTCCCGGCCCCCTGAATCTTTCTTAGT
CTATCAGAATCCATCATTACCTTTGATTTTTCATCACTTTTAAGGTTTTA
TTGATTATTTATTCAGGGGGTGTATTGTATTCATTTCTTTGGTTTACCCT
CTAGTAAGACGACAAAGCATTAACAATTAAGATACCCACTAGCTTACTCC
TTTGTTTACTTTTAGCCACCAGTGTTTCCCTTACATTGTGATATCAACAA
GACGATCATAGATGATGATTTACCTCAATCAATATCAGTTGTATCCTTCA
CAGAAAGCGTTAAATATTTCAGTACTGGCCTAGCTGTCATTCCTTTACTA
GCATTTATGGAAGCAATGGCTATTGGGAAAGGTAAGGCAGTTTTATTTAT
TACTGAATTTTGACAAGTGTATGTTCTTCTTTGATAAAAGATGTTGATTT
CACCCTTACACTAAAAACAACAAAAACTATAACTCTGTAAAATATACCCT
CAAAAAAACAAAGACAAAAAACTCTCAGACATGAACTGATTGAAACTTTT
ATATTTATAATCTTCATAGCATTTGGTCGTATAAACAATTACAAGATCAT
ACCAACACAAGAGTTGGTTGCTTTAGGGGTGGCAAACCTGGCTGGTTGTT
TTGTTTCAGCCTATCCAGTCACCGGTAGTTTTTCCAGGACAGCAGTCAAT
TCTCAAAGTGGTGTCAAAACTCCTTTGTCTGGTAAGTGGCGATTGGAGGC
CCTTTTTGAGTATGAGTAATAACGGAAAGGACAAATTGTATAATCATGTT
AAACAATAATCCCGTTACGATTATTGTATAACATTGAGTCTGAAGCCCGA
TTGGCTAGAGTAGATTCTCTAAACGCGTCTAGAACACGCCGCAATCATGA
CGACGGATTGTATCTAGCGGTTCCTTTGTTTTTGAGGACTCCATTTTTTG
AAATCTAGCGATAGATTTATTTTTCAATCCGGCGTTTGTGTAAAATAACG
CGCGGGCGTTCTGGATGGGAAATACTAGTGGCCTCATTTCCCATCCAGGA
GTCTCAAGTCTAGCAGTTCGGGCTTGGAAATCAATGTCGTATAATCATTT
AGCACCTGCTGTGCATTAAATGACCCCAGTTTAAAAATAAGAGTTTCATA
AAATTACTTCTTTTTGAACTCTGTATTTTCTTTTTCTAATAGGTATATTC
TCTGGTACCATCGTTGTGCTTGCTACACAATATCTGACGCAGTATTTCCA
CTACATTCCGAAAGCATGTCTTGGATCCGTCATTATTTGCGCAGTCATCA
ACATGGTAGATCTAAACATAGTTCGATCCATATGGAAAGTCAACAAAATC
GACCTCATCCCATACACAATCACTTTCTTAGCCTGTTTTTACACACTTGA
AACAGGTTTGATCCTTGGTATTGCATCCAGTCTAATCTTATTATTAAAAT
CAAGCGTCAGCCCACCATTACGCGTAGAACAAGGCGATGTGCAGGTCATC
ACAGTTCAAAACGGAGTCTTGTATCCTGGCATTGAGAAAATAGTAAACAA
AGTTGACGAATTGTTTAGCCTGAGTTCCTTACCCTCTGCTATAGTGTTAG
ACTTGAAAAATGTTGTTGAAATTGATTACACAGTAGCTGCAGAGCTTCAC
GAGCTTGTCTTGCAGTTGAGAAAATGTGTGAAACAAGACACCGATTTTTG
GATTATCAATGCTAATTTTCAAGTGAAGAAAATTTTGTTGTTGTCTAATA
TGCAAGACACTTTGACAACTTGGGAACATTTGCAAGAGAGCTATGCTGGT
GCACGGAGGAACTCCCTTCCTTCAATGACATGATCGCTGTCGTACACGTT
TTTATTAGAAATGTAGAAAATTTTTTTCGAGTCTCGGAGGTTCTAACTTT
TTGGAAACTTGAAACCTCAAATTGTTCTTATCTTGTTCTTGTTACTTCAA
CTTGGAGTGCTTTAGGCTTCTTACCTTATTTTTGAAATGCAGCCATTGCA
GACTCAAAGTTGTTCTTAAACGATCCTTATCCTTTGACATTTTTAAGCCT
CGGGTTTTTTTTTTGATTAAAAAGAATTTACCTTTTCATTCTGAAATTCT
TTGTCTGACGTCTGTTCAGTCTGAAATCTTCAATTGAAACGTATTTCTGT
AAACTTAAGCTGTTTCTCACATGTATTGTTATAAAAATTAGAATTTTGAA
TGAGGTCACCAAACCTTACAAAATGTTATCTCGAAGATTTCGTAGAAATT
CGTAGAGGTTTTCCGGGAGCCCTTGTATAACTATGACCTTTAGGCTTATT
AAAAGGTGGATTTCAGCAGAGGATTGGAAAATACGAGTTAAAAGGCACGA
GTTAAAAAACACGAGTTACAAAAAACACGAGTTACGTTAAATGTGACGTC
ATCAATGGGAAATTATGACGTCACAAGTAGATAATTT

Coding sequence (CDS) from alignment at scaffold_419:368349..372035-

>TCONS_00064578 ID=TCONS_00064578|Name=TCONS_00064578|organism=Clytia hemisphaerica|type=CDS|length=7464bp|location=Sequence derived from alignment at scaffold_419:368349..372035- (Clytia hemisphaerica)
GTATATTCTCTGGTACCATCGTTGTGCTTGCTACACAATATCTGACGCAG
TATTTCCACTACATTCCGAAAGCATGTCTTGGATCCGTCATTATTTGCGC
AGTCATCAACATGGTAGATCTAAACATAGTTCGATCCATATGGAAAGTCA
ACAAAATCGACCTCATCCCATACACAATCACTTTCTTAGCCTGTTTTTAC
ACACTTGAAACAGGTTTGATCCTTGGTATTGCATCCAGTCTAATCTTATT
ATTAAAATCAAGCGTCAGCCCACCATTACGCGTAGAACAAGGCGATGTGC
AGGTCATCACAGTTCAAAACGGAGTCTTGTATCCTGGCATTGAGAAAATA
GTAAACAAAGTTGACGAATTGTTTAGCCTGAGTTCCTTACCCTCTGCTAT
AGTGTTAGACTTGAAAAATGTTGTTGAAATTGATTACACAGTAGCTGCAG
AGCTTCACGAGCTTGTCTTGCAGTTGAGAAAATGTGTGAAACAAGACACC
GATTTTTGGATTATCAATGCTAATTTTCAAGTGAAGAAAATTTTGTTGTT
GTCTAATATGCAAGACACTTTGACAACTTGGGAACATTTGCAAGAGAGCT
ATGCTGGTGCACGGAGGAACTCCCTTCCTTCAATGACATGACATTTGGTC
GTATAAACAATTACAAGATCATACCAACACAAGAGTTGGTTGCTTTAGGG
GTGGCAAACCTGGCTGGTTGTTTTGTTTCAGCCTATCCAGTCACCGGTAG
TTTTTCCAGGACAGCAGTCAATTCTCAAAGTGGTGTCAAAACTCCTTTGT
CTGCCACCAGTGTTTCCCTTACATTGTGATATCAACAAGACGATCATAGA
TGATGATTTACCTCAATCAATATCAGTTGTATCCTTCACAGAAAGCGTTA
AATATTTCAGTACTGGCCTAGCTGTCATTCCTTTACTAGCATTTATGGAA
GCAATGGCTATTGGGAAAGATGCAGTCACACGTTTTTATNAATGTCAGCC
CAAGTGACAAAATCCCACTTTATGAGGGCGAAGACACCCATAAAGGGAGA
GCAATGCCAGAATGCAGTCACACGTTTTTATACTACTTTAAAAAGATTTG
TTATACACATTTACCAATACTGACCTGGCTTCCAAAATATAATTTACATA
ATTTACAATGTGATCTTATTGCTGGGATAACAGTTGGTTTGATGGTTGTA
CCTCAAGCATTAGCATATGCTTCCATTGCTAGATTAAGTAATGAGTATGG
TTTGTTTTCTTCATTCATGGGAGTTTTTGTTTACACTCTGTTTGGGACAT
CAAAAGATGTCACTATTGGTCCTACAGCTATTTTATCATTGATGACCGCT
AGTTATAATGTTCCTCATTGTGTTGACACTGCAGTTGTTTTATCACTGTA
TGTTGGTATTATTTTACTATTGATGGGCATTTTTCGACTTGGTTTTCTGG
TGAGATTTGTATCTGTTCCTGTTATTTCAGCGTTTACATCAGCTGCAGCT
CTGACCATAGCTTGTGGTCAATTAAAAGATTGGAATGGCTTGGAACACGT
CCCTAGAGACTTCTTTGGTAACTTAACCTATATTTTTAAACACATTAAGG
AATGGAATACCTATGATTTAGTGTATGGTTTAGTATGTGTTGTAGTTTTA
TGTTTGATGAGGCTGTTGCCACGTTTGAATCGCGTGCAAGAAGACACACC
AAGCTATTCACGCCTTCTTCGAAAAGTTGCTTGGTTCTGTGGTATTGGTA
AAAATGCAATCGTGGTCATTTTTTCGTGCCTACTGATGTACATCTTCTCA
ATCTACAAAATCAATCATGATTTCACCCTTATTGAAAATATCAATGCTGG
TTTACCACCTTTCAAAGTATATTCTCTGGTACCATCGTTGTGCTTGCTAC
ACAATATCTGACGCAGTATTTCCACTACATTCCGAAAGCATGTCTTGGAT
CCGTCATTATTTGCGCAGTCATCAACATGGTAGATCTAAACATAGTTCGA
TCCATATGGAAAGTCAACAAAATCGACCTCATCCCATACACAATCACTTT
CTTAGCCTGTTTTTACACACTTGAAACAGGTTTGATCCTTGGTATTGCAT
CCAGTCTAATCTTATTATTAAAATCAAGCGTCAGCCCACCATTACGCGTA
GAACAAGGCGATGTGCAGGTCATCACAGTTCAAAACGGAGTCTTGTATCC
TGGCATTGAGAAAATAGTAAACAAAGTTGACGAATTGTTTAGCCTGAGTT
CCTTACCCTCTGCTATAGTGTTAGACTTGAAAAATGTTGTTGAAATTGAT
TACACAGTAGCTGCAGAGCTTCACGAGCTTGTCTTGCAGTTGAGAAAATG
TGTGAAACAAGACACCGATTTTTGGATTATCAATGCTAATTTTCAAGTGA
AGAAAATTTTGTTGTTGTCTAATATGCAAGACACTTTGACAACTTGGGAA
CATTTGCAAGAGAGCTATGCTGGTGCACGGAGGAACTCCCTTCCTTCAAT
GACATGACATTTGGTCGTATAAACAATTACAAGATCATACCAACACAAGA
GTTGGTTGCTTTAGGGGTGGCAAACCTGGCTGGTTGTTTTGTTTCAGCCT
ATCCAGTCACCGGTAGTTTTTCCAGGACAGCAGTCAATTCTCAAAGTGGT
GTCAAAACTCCTTTGTCTGCCACCAGTGTTTCCCTTACATTGTGATATCA
ACAAGACGATCATAGATGATGATTTACCTCAATCAATATCAGTTGTATCC
TTCACAGAAAGCGTTAAATATTTCAGTACTGGCCTAGCTGTCATTCCTTT
ACTAGCATTTATGGAAGCAATGGCTATTGGGAAAGATGCAGTCACACGTT
TTTATNAATGTCAGCCCAAGTGACAAAATCCCACTTTATGAGGGCGAAGA
CACCCATAAAGGGAGAGCAATGCCAGAATGCAGTCACACGTTTTTATACT
ACTTTAAAAAGATTTGTTATACACATTTACCAATACTGACCTGGCTTCCA
AAATATAATTTACATAATTTACAATGTGATCTTATTGCTGGGATAACAGT
TGGTTTGATGGTTGTACCTCAAGCATTAGCATATGCTTCCATTGCTAGAT
TAAGTAATGAGTATGGTTTGTTTTCTTCATTCATGGGAGTTTTTGTTTAC
ACTCTGTTTGGGACATCAAAAGATGTCACTATTGGTCCTACAGCTATTTT
ATCATTGATGACCGCTAGTTATAATGTTCCTCATTGTGTTGACACTGCAG
TTGTTTTATCACTGTATGTTGGTATTATTTTACTATTGATGGGCATTTTT
CGACTTGGTTTTCTGGTGAGATTTGTATCTGTTCCTGTTATTTCAGCGTT
TACATCAGCTGCAGCTCTGACCATAGCTTGTGGTCAATTAAAAGATTGGA
ATGGCTTGGAACACGTCCCTAGAGACTTCTTTGGTAACTTAACCTATATT
TTTAAACACATTAAGGAATGGAATACCTATGATTTAGTGTATGGTTTAGT
ATGTGTTGTAGTTTTATGTTTGATGAGGCTGTTGCCACGTTTGAATCGCG
TGCAAGAAGACACACCAAGCTATTCACGCCTTCTTCGAAAAGTTGCTTGG
TTCTGTGGTATTGGTAAAAATGCAATCGTGGTCATTTTTTCGTGCCTACT
GATGTACATCTTCTCAATCTACAAAATCAATCATGATTTCACCCTTATTG
AAAATATCAATGCTGGTTTACCACCTTTCAAAGTATATTCTCTGGTACCA
TCGTTGTGCTTGCTACACAATATCTGACGCAGTATTTCCACTACATTCCG
AAAGCATGTCTTGGATCCGTCATTATTTGCGCAGTCATCAACATGGTAGA
TCTAAACATAGTTCGATCCATATGGAAAGTCAACAAAATCGACCTCATCC
CATACACAATCACTTTCTTAGCCTGTTTTTACACACTTGAAACAGGTTTG
ATCCTTGGTATTGCATCCAGTCTAATCTTATTATTAAAATCAAGCGTCAG
CCCACCATTACGCGTAGAACAAGGCGATGTGCAGGTCATCACAGTTCAAA
ACGGAGTCTTGTATCCTGGCATTGAGAAAATAGTAAACAAAGTTGACGAA
TTGTTTAGCCTGAGTTCCTTACCCTCTGCTATAGTGTTAGACTTGAAAAA
TGTTGTTGAAATTGATTACACAGTAGCTGCAGAGCTTCACGAGCTTGTCT
TGCAGTTGAGAAAATGTGTGAAACAAGACACCGATTTTTGGATTATCAAT
GCTAATTTTCAAGTGAAGAAAATTTTGTTGTTGTCTAATATGCAAGACAC
TTTGACAACTTGGGAACATTTGCAAGAGAGCTATGCTGGTGCACGGAGGA
ACTCCCTTCCTTCAATGACATGACATTTGGTCGTATAAACAATTACAAGA
TCATACCAACACAAGAGTTGGTTGCTTTAGGGGTGGCAAACCTGGCTGGT
TGTTTTGTTTCAGCCTATCCAGTCACCGGTAGTTTTTCCAGGACAGCAGT
CAATTCTCAAAGTGGTGTCAAAACTCCTTTGTCTGCCACCAGTGTTTCCC
TTACATTGTGATATCAACAAGACGATCATAGATGATGATTTACCTCAATC
AATATCAGTTGTATCCTTCACAGAAAGCGTTAAATATTTCAGTACTGGCC
TAGCTGTCATTCCTTTACTAGCATTTATGGAAGCAATGGCTATTGGGAAA
GATGCAGTCACACGTTTTTATNAATGTCAGCCCAAGTGACAAAATCCCAC
TTTATGAGGGCGAAGACACCCATAAAGGGAGAGCAATGCCAGAATGCAGT
CACACGTTTTTATACTACTTTAAAAAGATTTGTTATACACATTTACCAAT
ACTGACCTGGCTTCCAAAATATAATTTACATAATTTACAATGTGATCTTA
TTGCTGGGATAACAGTTGGTTTGATGGTTGTACCTCAAGCATTAGCATAT
GCTTCCATTGCTAGATTAAGTAATGAGTATGGTTTGTTTTCTTCATTCAT
GGGAGTTTTTGTTTACACTCTGTTTGGGACATCAAAAGATGTCACTATTG
GTCCTACAGCTATTTTATCATTGATGACCGCTAGTTATAATGTTCCTCAT
TGTGTTGACACTGCAGTTGTTTTATCACTGTATGTTGGTATTATTTTACT
ATTGATGGGCATTTTTCGACTTGGTTTTCTGGTGAGATTTGTATCTGTTC
CTGTTATTTCAGCGTTTACATCAGCTGCAGCTCTGACCATAGCTTGTGGT
CAATTAAAAGATTGGAATGGCTTGGAACACGTCCCTAGAGACTTCTTTGG
TAACTTAACCTATATTTTTAAACACATTAAGGAATGGAATACCTATGATT
TAGTGTATGGTTTAGTATGTGTTGTAGTTTTATGTTTGATGAGGCTGTTG
CCACGTTTGAATCGCGTGCAAGAAGACACACCAAGCTATTCACGCCTTCT
TCGAAAAGTTGCTTGGTTCTGTGGTATTGGTAAAAATGCAATCGTGGTCA
TTTTTTCGTGCCTACTGATGTACATCTTCTCAATCTACAAAATCAATCAT
GATTTCACCCTTATTGAAAATATCAATGCTGGTTTACCACCTTTCAAAGT
ATATTCTCTGGTACCATCGTTGTGCTTGCTACACAATATCTGACGCAGTA
TTTCCACTACATTCCGAAAGCATGTCTTGGATCCGTCATTATTTGCGCAG
TCATCAACATGGTAGATCTAAACATAGTTCGATCCATATGGAAAGTCAAC
AAAATCGACCTCATCCCATACACAATCACTTTCTTAGCCTGTTTTTACAC
ACTTGAAACAGGTTTGATCCTTGGTATTGCATCCAGTCTAATCTTATTAT
TAAAATCAAGCGTCAGCCCACCATTACGCGTAGAACAAGGCGATGTGCAG
GTCATCACAGTTCAAAACGGAGTCTTGTATCCTGGCATTGAGAAAATAGT
AAACAAAGTTGACGAATTGTTTAGCCTGAGTTCCTTACCCTCTGCTATAG
TGTTAGACTTGAAAAATGTTGTTGAAATTGATTACACAGTAGCTGCAGAG
CTTCACGAGCTTGTCTTGCAGTTGAGAAAATGTGTGAAACAAGACACCGA
TTTTTGGATTATCAATGCTAATTTTCAAGTGAAGAAAATTTTGTTGTTGT
CTAATATGCAAGACACTTTGACAACTTGGGAACATTTGCAAGAGAGCTAT
GCTGGTGCACGGAGGAACTCCCTTCCTTCAATGACATGACATTTGGTCGT
ATAAACAATTACAAGATCATACCAACACAAGAGTTGGTTGCTTTAGGGGT
GGCAAACCTGGCTGGTTGTTTTGTTTCAGCCTATCCAGTCACCGGTAGTT
TTTCCAGGACAGCAGTCAATTCTCAAAGTGGTGTCAAAACTCCTTTGTCT
GCCACCAGTGTTTCCCTTACATTGTGATATCAACAAGACGATCATAGATG
ATGATTTACCTCAATCAATATCAGTTGTATCCTTCACAGAAAGCGTTAAA
TATTTCAGTACTGGCCTAGCTGTCATTCCTTTACTAGCATTTATGGAAGC
AATGGCTATTGGGAAAGATGCAGTCACACGTTTTTATNAATGTCAGCCCA
AGTGACAAAATCCCACTTTATGAGGGCGAAGACACCCATAAAGGGAGAGC
AATGCCAGAATGCAGTCACACGTTTTTATACTACTTTAAAAAGATTTGTT
ATACACATTTACCAATACTGACCTGGCTTCCAAAATATAATTTACATAAT
TTACAATGTGATCTTATTGCTGGGATAACAGTTGGTTTGATGGTTGTACC
TCAAGCATTAGCATATGCTTCCATTGCTAGATTAAGTAATGAGTATGGTT
TGTTTTCTTCATTCATGGGAGTTTTTGTTTACACTCTGTTTGGGACATCA
AAAGATGTCACTATTGGTCCTACAGCTATTTTATCATTGATGACCGCTAG
TTATAATGTTCCTCATTGTGTTGACACTGCAGTTGTTTTATCACTGTATG
TTGGTATTATTTTACTATTGATGGGCATTTTTCGACTTGGTTTTCTGGTG
AGATTTGTATCTGTTCCTGTTATTTCAGCGTTTACATCAGCTGCAGCTCT
GACCATAGCTTGTGGTCAATTAAAAGATTGGAATGGCTTGGAACACGTCC
CTAGAGACTTCTTTGGTAACTTAACCTATATTTTTAAACACATTAAGGAA
TGGAATACCTATGATTTAGTGTATGGTTTAGTATGTGTTGTAGTTTTATG
TTTGATGAGGCTGTTGCCACGTTTGAATCGCGTGCAAGAAGACACACCAA
GCTATTCACGCCTTCTTCGAAAAGTTGCTTGGTTCTGTGGTATTGGTAAA
AATGCAATCGTGGTCATTTTTTCGTGCCTACTGATGTACATCTTCTCAAT
CTACAAAATCAATCATGATTTCACCCTTATTGAAAATATCAATGCTGGTT
TACCACCTTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040497XLOC_040497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064578-exon-scaffold_419-1575043694:371016..372035TCONS_00064578-exon-scaffold_419-1575043694:371016..372035Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1575043694:370405..370570TCONS_00064578-exon-scaffold_419-1575043694:370405..370570Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1575043694:370055..370216TCONS_00064578-exon-scaffold_419-1575043694:370055..370216Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1575043694:368349..369593TCONS_00064578-exon-scaffold_419-1575043694:368349..369593Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1510915933:371016..372035TCONS_00064578-exon-scaffold_419-1510915933:371016..372035Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1510915933:370405..370570TCONS_00064578-exon-scaffold_419-1510915933:370405..370570Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1510915933:370055..370216TCONS_00064578-exon-scaffold_419-1510915933:370055..370216Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1510915933:368349..369593TCONS_00064578-exon-scaffold_419-1510915933:368349..369593Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1491911889:371016..372035TCONS_00064578-exon-scaffold_419-1491911889:371016..372035Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1491911889:370405..370570TCONS_00064578-exon-scaffold_419-1491911889:370405..370570Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1491911889:370055..370216TCONS_00064578-exon-scaffold_419-1491911889:370055..370216Clytia hemisphaericaexon
TCONS_00064578-exon-scaffold_419-1491911889:368349..369593TCONS_00064578-exon-scaffold_419-1491911889:368349..369593Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064578-proteinTCONS_00064578-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:368349..372035 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.61204	7.16886	6.58732	5.89708	4.35875	2.99861	2.54216	2.60878	2.8839	2.81805	5.47053	2.22858	3.69227	4.46478	2.4615	2.20131	4.22474	2.69176	3.3146	5.07583	4.77947	4.62665	4.79592	6.10423	3.55188	6.15776	3.91053	3.1718	5.6555	5.07406
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002645STAS_dom
IPR011547SLC26A/SulP_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0015116sulfate transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0008272sulfate transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008272 sulfate transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015116 sulfate transmembrane transporter activity
Blast
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BLAST of TCONS_00064578 vs. Swiss-Prot (Human)
Match: S2611 (Sodium-independent sulfate anion transporter OS=Homo sapiens GN=SLC26A11 PE=2 SV=2)

HSP 1 Score: 387.111 bits (993), Expect = 1.525e-122
Identity = 244/605 (40.33%), Postives = 353/605 (58.35%), Query Frame = 1 
Query:  154 PSDKIPLYEGEDTHKGRAMPECSHTFLYYFKKICYTHLPILTWLPKYNLHNLQCDLIAGITVGLMVVPQALAYASIARLSNEYGLFSSFMGVFVYTLFGTSKDVTIGPTAILSLMTASYNVPHCVDTAVVLSLYVGIILLLMGIFRLGFLVRFVSVPVISAFTSAAALTIACGQLKDWNGLEHVPRDFFGNLTYIFKHIKEWNTYDXXXXXXXXXXXXXXXXXX-XXNRVQEDTPSYSRLLRKVAWFCGIGKNAIVVIFSCLLMYIFSIYKINHDFTLIENINAGLPPFKPPVFPLHCDINKTIIDDDLPQSISVVSFTESVKYFSTGLAVIPLLAFMEAMAIGKAFGRINNYKIIPTQELVALGVANLAGCFVSAYPVTGSFSRTAVNSQSGVKTPLSGIFSGTIVVLATQYLTQYFHYIPKACLGSVIICAVINMVDLNIVRSIWKVNKIDLIPYTITFLACFYTLETGXXXXXXXXXXXXXXXXXXXXXRVEQGDVQVITVQNGVLYPGIEKIVNKVDELFSLSSLPSAIVLDLKNVVEIDYTVAAELHELVLQLRKCVKQDTDFWIINANFQVKKILLLSNMQ-----DTLTTWE-HLQES 1947
            PS    L +   +  G A   C  +            LPIL WLP Y+L  L+ D +AG++VGL  +PQALAYA +A L  +YGL+S+FMG FVY   GTS+DVT+GPTAI+SL+ + Y   H    AV+L+   G I L MG+ RLGFL+ F+S PVI  FTSAAA+TI  GQ+K+  GL+++PR FF  + + F  I E    D V GLVC+++L +++L+   +  V  + P   RL R + W     +NA+VV F+ L+ Y F +      F L      GLPP + P F +    N TI            SFTE V+    GLAV+PL+  +E++A+ KAF   NNY+I   QEL+A+G+ N+ G  VS+YPVTGSF RTAVN+QSGV TP  G+ +G +V+L+  YLT  F+YIPK+ L +VII AV  + D  I R++W+V ++DL+P  +TFL CF+ ++ G++ G   SL++LL S+  P  +V +G V V+   +G+ +P +E +  ++       S P  +VL+  +V  IDYTV   L EL   L+   KQ      +     V ++LL ++++      TL   E HL++ 
Sbjct:    2 PSSVTALGQARSSGPGMAPSACCCS-----PAALQRRLPILAWLPSYSLQWLKMDFVAGLSVGLTAIPQALAYAEVAGLPPQYGLYSAFMGCFVYFFLGTSRDVTLGPTAIMSLLVSFYTF-HEPAYAVLLAFLSGCIQLAMGVLRLGFLLDFISYPVIKGFTSAAAVTIGFGQIKNLLGLQNIPRPFFLQVYHTFLRIAETRVGDAVLGLVCMLLLLVLKLMRDHVPPVHPEMPPGVRLSRGLVWAATTARNALVVSFAALVAYSFEVTGY-QPFILTGETAEGLPPVRIPPFSV-TTANGTI------------SFTEMVQDMGAGLAVVPLMGLLESIAVAKAFASQNNYRIDANQELLAIGLTNMLGSLVSSYPVTGSFGRTAVNAQSGVCTPAGGLVTGVLVLLSLDYLTSLFYYIPKSALAAVIIMAVAPLFDTKIFRTLWRVKRLDLLPLCVTFLLCFWEVQYGILAGALVSLLMLLHSAARPETKVSEGPVLVLQPASGLSFPAMEALREEILSRALEVSPPRCLVLECTHVCSIDYTVVLGLGEL---LQDFQKQGVALAFVGLQVPVLRVLLSADLKGFQYFSTLEEAEKHLRQE 583
The following BLAST results are available for this feature:
BLAST of TCONS_00064578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S26111.525e-12240.33Sodium-independent sulfate anion transporter OS=Ho... [more]
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