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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064579 ID=TCONS_00064579|Name=TCONS_00064579|organism=Clytia hemisphaerica|type=transcript|length=1546bp
GTCACAACCACGGAGTGCTGAGCTGACTTTTAGTTCTAATGACTTGTTCT
CACTTGTTTGGTTTcggtaataaaaagaaagtggttattgtgaactttga
acatgctttgAAAAGAGGTATTTCCAGCCACTgattgttaaaagtgttac
ttgCTTGTTGTTGAAAAAATACAATGGGAAAACAAGATTAACAAGAAGTT
TTTTGCCATAGAAATTTCGGgcactgcaaaatttgaaaaattataccTCA
CAAATGTTGTCCATCTTATACACGTGAATGTAGTAGCTTTCCTGCAACAG
AAAAATGAATTATGACCACGTGGGATAAAATAGTGTTGACATGCAGTTCG
TCGCCATTTTGTGTTGTCAAAACATTCTCAGAATATTTACGGACTTGGCG
CTCTATTCCGTTCGTGGTGTCCTGGTCAAACTTACACGAATATCTActaa
tgaaaaaaaagattacaaTTCTGTGTAATAGTGACCACGTCTCGGTTCAA
TGGATTGACAACAGGCTTACTTGTACTTACTCTCCTCGTGGAGTTACAAC
attcctttttcattttattccaCGCCACCGACAAGATGGTGAAGAACGTC
TGTTCTAAAACTTATGTCACTCCAAGGAGGCCCTTCGAAAAGGCTCGACT
CGACCAAGAACTTAAACTCATCGGAGAATTCGGTCTCAAAAACAAACGTG
AAGTATGGAGGGTAAAATTTGCCTTAGCCAAGATCAGAAAGCGTGCTCGT
GACTTGCTTACATTGGGAGAAAAAGATAACCGACGTTTATTCGAAGGAAA
TGCCCTCTTGAGAAGACTTGTCCGTATTGGTGTCTTAGATGAAGGACGCA
TGAAGCTCGATTATGTCCTTGGTTTAAAAGTTGAGGACTTTCTTGAACGT
CGCCTTCAAACACAGGTTTTCAAACTTGGACTCGCCAAATCCATTCATCA
TGCCCGAGTTTTGATTCGTCAAAGACATATTCGTGTCcgaaagcaattgg
tcaacgtTCCATCATTCCTTGTTCGTTTGGACTCTCAAAAGCATATTGAC
TTCTGCACAAACTCACCATATGGCGGTGGTGCACCAGGACGTGTCAAGAG
GAAGAATGCTGCTAAAGGCAAAGGAGGAGATGCTGAAGAAGAGGATGACG
AGTAGATGATTTAGAAGTACCACGAGCTTTGAAATCTTCATCTGGTGGAa
aggaaatataaaaaaatacaatgtGACCATTGTCTTTCTTCATAAATTCC
CTAAGTTTGGTTTGCCCCAAAAACAGATTTatgataacttttaaaatcga
aaatttcccgataaaataatgaacttcttttttttttcaaactacaTAGA
AATTGTTACTCGAAAAAATtcgcattttacctaaaaatacgaggtttcgt
tggacagaatgaataactttactttatttcttacagtatgtggcccccaa
aacgtcgaccaaatttaaaatttctctcaaagctagaggaaaagaagttt
tactaaagttatttttcaaaattttcaatctcaACAATATTAGAAA Run BLAST on NCBI protein sequence of TCONS_00064579-protein >TCONS_00064579-protein ID=TCONS_00064579-protein|Name=TCONS_00064579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MVKNVCSKTYVTPRRPFEKARLDQELKLIGEFGLKNKREVWRVKFALAKI
RKRARDLLTLGEKDNRRLFEGNALLRRLVRIGVLDEGRMKLDYVLGLKVE
DFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSFLVRLDS
QKHIDFCTNSPYGGGAPGRVKRKNAAKGKGGDAEEEDDE Run BLAST on NCBI transcript from alignment at scaffold_419:394211..397889- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064579 ID=TCONS_00064579|Name=TCONS_00064579|organism=Clytia hemisphaerica|type=transcript|length=3679bp|location=Sequence derived from alignment at scaffold_419:394211..397889- (Clytia hemisphaerica)
GTCACAACCACGGAGTGCTGAGCTGACTTTTAGTTCTAATGACTTGTTCT
CACTTGTTTGGTTTCGGTAATAAAAAGAAAGTGGTTATTGTGAACTTTGA
ACATGCTTTGAAAAGAGGTATTTCCAGCCACTGATTGTTAAAAGTGTTAC
TTGCTTGTTGTTGAAAAAATACAATGGGAAAACAAGATTAACAAGAAGTT
TTTTGCCATAGAAATTTCGGGCACTGCAAAATTTGAAAAATTATACCTCA
CAAATGTTGTCCATCTTATACACGTGAATGTAGTAGCTTTCCTGCAACAG
AAAAATGAATTATGACCACGTGGGATAAAATAGTGTTGACATGCAGTTCG
TCGCCATTTTGTGTTGTCAAAACATTCTCAGAATATTTACGGACTTGGCG
CTCTATTCCGTTCGTGGTGTCCTGGTCAAACTTACACGAATATCTACTAA
TGAAAAAAAAGATTACAATTCTGTGTAATAGTGACCACGTCTCGGTTCAA
TGGATTGACAACAGGCTTACTTGTACTTACTCTCCTCGTGGAGTTACAAC
ATTCCTTTTTCATTTTATTCCACGCCACCGACAAGATGGTGAAGAACGTC
TGTTCTAAAACTTATGTCACTCCAAGGAGGCCCTTCGAAAAGGCTCGACT
CGACCAAGAACTTAAACTCATCGGAGAATTCGGTCTCAAAAACAAACGTG
AAGTATGGAGGGTAAAATTTGCCTTAGCCAAGATCAGAAAGCGTGCTCGT
GACTTGCTTACATTGGGAGAAAAAGATAACCGACGTTTATTCGAAGGAAA
TGCCCTCTTGAGAAGACTTGTCCGTATTGGTGTCTTAGATGAAGGACGCA
TGAAGCTCGATTATGTCCTTGGTTTAAAAGTTGAGGACTTTCTTGAACGT
CGCCTTCAAACACAGGTTTTCAAACTTGGACTCGCCAAATCCATTCATCA
TGCCCGAGTTTTGATTCGTCAAAGACATATTCGGTAAGCTTGTCATGTCT
ACTTATGGTTAGCTATCACTTCGAAATTAAACTTTCCTCTCTGTCGAGGA
ACAAATTATCTACATCTTATTGATGTCTTTTATCTGATGGTTTAACTGCA
ATTTGATTGTACCTGCCAGTCTTTTCAAACAAAGATATGCAATTTAAATG
TGATGTATACATTTTATTTACATGTTCAAAATTACAGGAAAAGTAAGGGA
CCTTAAGCAACTGTAGACCTGAGTTTTGTACTCAACTACAGTGTGCATGG
CTCTGGGTTTCTAACCCAAGCCGGGTCTTTCAAAGGATCACTTGATCAAT
GAAAACTTACAATGGAGCATATGCCCAACTATTTCCTTGGTCACTCACAA
AGAAAGTTGAACGCAGTGGAGGTCTTCAGGGCTATCTCAGCAGTCATAAC
TATTAACTGCCCAAAAAATAAAAGGTGCTTACAGTAGTTATGTTTTAAGT
AGTTATGTTGCTGGTTGTGATAAAATGTACACCCACCTAAGCGCATCATG
CAGACACAAGCCAAGTTGGTGAAGTTGAAGACGTGTATGTTTGAGATTAC
TATTTTTAAAAATCCTTTTATCTTCAAAGAAATTATGAAATTCTTTTAAA
ATGAAGGAGATAAAAAATGATATTCGGGATAATTTTGGAGACTAATTTCG
TGTTTTATAGATGAATTTACAGTTACATTATTTTCTTTTTCCTTTAGGGG
AAAAACCGTACAAATGCACGCATTGTGACAAAAAATTTGCCAATTCAAGC
AATCGGCCGAAACATGTCCGAACCCACATAGTCTCCATAACTGCCAGCTA
TTCATTTGGCTTTACCACTAAAATTATTTGCACTCATCTGATTATTGAAT
GATTGTTAAGATGTTTATTGGGCTATTCCAAAAAAATTGTACAGGGGTAT
TGACAAACTTTTTTCACTAACCCCCCACCCGCATTATAAAAGTACGTTTA
AGGCTTCAATGGCCAAAATGTTAAGAACAAGCTAAGAACATTTTAAGGCT
TCATGGGCTCCAAAACACCCAGTTTCTTAGGAAATTGCATATTAAGCTTG
TTTTAAGAAAGAGTCGGCCTTCACCAAGATAGGTATAAGAACAAACAAAA
TGACGTTTTCTTTTCCATCATTAGTGTCCGAAAGCAATTGGTCAACGTTC
CATCATTCCTTGTTCGTTTGGACTCTCAAAAGCATATTGACTTCTGCACA
AACTCACCATATGGCGGTGGTGCACCAGGACGTGTCAAGAGGAAGAATGC
TGCTAAAGGCAAAGGAGGAGATGCTGAAGAAGAGGATGACGAGTAGATGG
TATGCTAATATTTGAACTCATTCAGTTGACTTGAGGGGCAATTTTTATGA
AAGATCCATTAGTGTGCTCTGCAACTCATGTATCAGCTTCCCTTTGAGTC
TGCTAAATCATGCGCCACATGCGCCCTATATTTTGAATGCGCCTTAGTGC
CCAAGCGCCTCACGCGCCCTTAAAATTTTCGTGCGCCCATATTTTTCACA
CGCTTATATCTTAATTGCTTTTTGGCCCATTCTCACCTTGAAAACAAAAA
AAATGTGCATCTCCTTTTTCTAAGCGCTGTGAATCAATAATATCTCGATT
TTATCTTAAGATTTTCCAAAATCGGTTTTCCAAATTTATTCCATTTTCAT
AAGGGGGTTGCCACTTAAGGGGGTTTTTGCTCCCTCTTGAAACTTACTGT
GTGATGAGTTTTCATCATTTGTAGATTACCAAAATTGAGTACTCAAATTC
TCTAGTATCTTTCAATAACTATAAGATGAGGCCCGGAAAACCGGAGTTAT
GACGAATGTGACGTCACAAGTCAAATTTTAAATTTCATTTTTCGAGTTAC
ATAACTCTAAACAAAATTTTAAAAAAATATTTAAAGTCACAAAACAACAG
TAAAAAACTTTTTTGAGTTAAAAAGCCCACTTATGACGTCTTAATATGAG
ACTTGTGACGTCAGATTCGTCGTAACCCGGGGTTTGAGTACTCAGTGTGT
TCATTTTATTTTTTACAAATGATGAAAACTCATCACACAGTAAGTTTCTA
GAGGGAGCAAAAACCCCCTTAAGTGGCAACCCCCTTATGAAAATGGAATA
AATTTGGAAAAAAATTAAGATTCGTGAAAAGTATGGGTGCGTGAAAATAA
TTAAGGCACGTGAAAAATTTGGGCACGTGAAAAAGCAAGTTGCTTGGGCA
CTGAGGCGCTCCTTCCCTTTGTAGTTACCCTAAAGATTATTTCTGACATT
TTTTTTAGAGGTATTCCTAAATTTTTCTTTTTTCCTTTCAGATTTAGAAG
TACCACGAGCTTTGAAATCTTCATCTGGTGGAAAGGAAATATAAAAAAAT
ACAATGTGACCATTGTCTTTCTTCATAAATTCCCTAAGTTTGGTTTGCCC
CAAAAACAGATTTATGATAACTTTTAAAATCGAAAATTTCCCGATAAAAT
AATGAACTTCTTTTTTTTTTCAAACTACATAGAAATTGTTACTCGAAAAA
ATTCGCATTTTACCTAAAAATACGAGGTTTCGTTGGACAGAATGAATAAC
TTTACTTTATTTCTTACAGTATGTGGCCCCCAAAACGTCGACCAAATTTA
AAATTTCTCTCAAAGCTAGAGGAAAAGAAGTTTTACTAAAGTTATTTTTC
AAAATTTTCAATCTCAACAATATTAGAAA Coding sequence (CDS) from alignment at scaffold_419:394211..397889- >TCONS_00064579 ID=TCONS_00064579|Name=TCONS_00064579|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_419:394211..397889- (Clytia hemisphaerica)
TGTCCGAAAGCAATTGGTCAACGTTCCATCATTCCTTGTTCGTTTGGACT
CTCAAAAGCATATTGACTTCTGCACAAACTCACCATATGGCGGTGGTGCA
CCAGGACGTGTCAAGAGGAAGAATGCTGCTAAAGGCAAAGGAGGAGATGC
TGAAGAAGAGGATGACGAGTAGATGGTGAAGAACGTCTGTTCTAAAACTT
ATGTCACTCCAAGGAGGCCCTTCGAAAAGGCTCGACTCGACCAAGAACTT
AAACTCATCGGAGAATTCGGTCTCAAAAACAAACGTGAAGTATGGAGGGT
AAAATTTGCCTTAGCCAAGATCAGAAAGCGTGCTCGTGACTTGCTTACAT
TGGGAGAAAAAGATAACCGACGTTTATTCGAAGGAAATGCCCTCTTGAGA
AGACTTGTCCGTATTGGTGTCTTAGATGAAGGACGCATGAAGCTCGATTA
TGTCCTTGGTTTAAAAGTTGAGGACTTTCTTGAACGTCGCCTTCAAACAC
AGGTTTTCAAACTTGGACTCGCCAAATCCATTCATCATGCCCGAGTTTTG
ATTCGTCAAAGACATATTCGTGTCCGAAAGCAATTGGTCAACGTTCCATC
ATTCCTTGTTCGTTTGGACTCTCAAAAGCATATTGACTTCTGCACAAACT
CACCATATGGCGGTGGTGCACCAGGACGTGTCAAGAGGAAGAATGCTGCT
AAAGGCAAAGGAGGAGATGCTGAAGAAGAGGATGACGAGTAGATGGTGAA
GAACGTCTGTTCTAAAACTTATGTCACTCCAAGGAGGCCCTTCGAAAAGG
CTCGACTCGACCAAGAACTTAAACTCATCGGAGAATTCGGTCTCAAAAAC
AAACGTGAAGTATGGAGGGTAAAATTTGCCTTAGCCAAGATCAGAAAGCG
TGCTCGTGACTTGCTTACATTGGGAGAAAAAGATAACCGACGTTTATTCG
AAGGAAATGCCCTCTTGAGAAGACTTGTCCGTATTGGTGTCTTAGATGAA
GGACGCATGAAGCTCGATTATGTCCTTGGTTTAAAAGTTGAGGACTTTCT
TGAACGTCGCCTTCAAACACAGGTTTTCAAACTTGGACTCGCCAAATCCA
TTCATCATGCCCGAGTTTTGATTCGTCAAAGACATATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064579-exon-scaffold_419-1575043694:396907..397889 | TCONS_00064579-exon-scaffold_419-1575043694:396907..397889 | Clytia hemisphaerica | exon |
| TCONS_00064579-exon-scaffold_419-1575043694:395591..395765 | TCONS_00064579-exon-scaffold_419-1575043694:395591..395765 | Clytia hemisphaerica | exon |
| TCONS_00064579-exon-scaffold_419-1575043694:394211..394598 | TCONS_00064579-exon-scaffold_419-1575043694:394211..394598 | Clytia hemisphaerica | exon |
| TCONS_00064579-exon-scaffold_419-1510915933:396907..397889 | TCONS_00064579-exon-scaffold_419-1510915933:396907..397889 | Clytia hemisphaerica | exon |
| TCONS_00064579-exon-scaffold_419-1510915933:395591..395765 | TCONS_00064579-exon-scaffold_419-1510915933:395591..395765 | Clytia hemisphaerica | exon |
| TCONS_00064579-exon-scaffold_419-1510915933:394211..394598 | TCONS_00064579-exon-scaffold_419-1510915933:394211..394598 | Clytia hemisphaerica | exon |
| TCONS_00064579-exon-scaffold_419-1491911889:396907..397889 | TCONS_00064579-exon-scaffold_419-1491911889:396907..397889 | Clytia hemisphaerica | exon |
| TCONS_00064579-exon-scaffold_419-1491911889:395591..395765 | TCONS_00064579-exon-scaffold_419-1491911889:395591..395765 | Clytia hemisphaerica | exon |
| TCONS_00064579-exon-scaffold_419-1491911889:394211..394598 | TCONS_00064579-exon-scaffold_419-1491911889:394211..394598 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_419 | supercontig | scaffold_419:394211..397889 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
| GO:0015935 | small ribosomal subunit |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0019843 | rRNA binding |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0015935 |
small ribosomal subunit |
| molecular_function |
GO:0003723 |
RNA binding |
| molecular_function |
GO:0019843 |
rRNA binding |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00064579 vs. Swiss-Prot (Human)
Match: RS9 (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3) HSP 1 Score: 303.908 bits (777), Expect = 2.976e-100 Identity = 149/168 (88.69%), Postives = 159/168 (94.64%), Query Frame = 1
Query: 598 VCSKTYVTPRRPFEKARLDQELKLIGEFGLKNKREVWRVKFALAKIRKRARDLLTLGEKDNRRLFEGNALLRRLVRIGVLDEGRMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSFLVRLDSQKHIDFCTNSPYGGGAPGRVKR 1101
VC KTYVTPRRPFEK+RLDQELKLIGE+GL+NKREVWRVKF LAKIRK AR+LLTL EKD RRLFEGNALLRRLVRIGVLDEG+MKLDY+LGLK+EDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQ+VN+PSF+VRLDSQKHIDF SPYGGG PGRVKR
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKR 175
The following BLAST results are available for this feature:
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