TCONS_00064606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064606
Unique NameTCONS_00064606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064606 ID=TCONS_00064606|Name=TCONS_00064606|organism=Clytia hemisphaerica|type=transcript|length=458bp
CAAAGACGAATTGTAACTAAATCTCAAACGAGCAGGAAAATTCAATTAAT
ATTTTATTGGTTTGATTGGAACTTTGCCATTCAATAACCTCACAATCTGT
ATTGAAGCCTTAAAGCTAGCATCACAAgttatcttagaaaaaacattttt
acttTGTTATTCTGCACATTAAAATAAAAGACCAGCAACATCCTCACATT
AATCCTCAACAAAAACTTGGAtgtatttgtttttgaaaacgacTGTATGT
GCAGCCAAATAGACGGATCTCAAATTTGATCCTTctagtgcagagaaaat
ttgattaaatttgtgCAAGAAATCAAACCTTGCCCAcaaccattgtagtt
taatgtgtTTTTCTTCACTCAAATCTCTTTCCAGTCGAAGCTTAAAAGAT
CTTGTCTAAAAAGTTTCTTGGAATTCTTCATTAAATCCACCTGCTGTTAT
CTCATGAA
Run BLAST on NCBI

transcript from alignment at scaffold_419:226203..226660

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064606 ID=TCONS_00064606|Name=TCONS_00064606|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at scaffold_419:226203..226660 (Clytia hemisphaerica)
TTCATGAGATAACAGCAGGTGGATTTAATGAAGAATTCCAAGAAACTTTT
TAGACAAGATCTTTTAAGCTTCGACTGGAAAGAGATTTGAGTGAAGAAAA
acacattaaactacaatggttgTGGGCAAGGTTTGATTTCTTGcacaaat
ttaatcaaattttctctgcactagAAGGATCAAATTTGAGATCCGTCTAT
TTGGCTGCACATACAgtcgttttcaaaaacaaatacaTCCAAGTTTTTGT
TGAGGATTAATGTGAGGATGTTGCTGGTCTTTTATTTTAATGTGCAGAAT
AACAaagtaaaaatgttttttctaagataacTTGTGATGCTAGCTTTAAG
GCTTCAATACAGATTGTGAGGTTATTGAATGGCAAAGTTCCAATCAAACC
AATAAAATATTAATTGAATTTTCCTGCTCGTTTGAGATTTAGTTACAATT
CGTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040515XLOC_040515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064606-exon-scaffold_419-1491911889:226203..226660TCONS_00064606-exon-scaffold_419-1491911889:226203..226660Clytia hemisphaericaexon
TCONS_00064606-exon-scaffold_419-1510915933:226203..226660TCONS_00064606-exon-scaffold_419-1510915933:226203..226660Clytia hemisphaericaexon
TCONS_00064606-exon-scaffold_419-1575043694:226203..226660TCONS_00064606-exon-scaffold_419-1575043694:226203..226660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:226203..226660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.138941	0.645297	0.157831	0	0	0	0	0	0.297442	0	0.189783	3.41134	4.13317	3.23621	0.347295	0.32088	1.64446	1.81752	2.37739	0	0.201581	0	0	0.152975	0	0.586109	1.25102	3.95357	2.09459
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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