TCONS_00064615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064615
Unique NameTCONS_00064615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064615 ID=TCONS_00064615|Name=TCONS_00064615|organism=Clytia hemisphaerica|type=transcript|length=397bp
CGACTGCCTCTACAACAGCAATGACAACAACGACAGCTGCAACCTCAACA
ACAACGGAAGAAGACGCTTTTAGTTGAAACACATTGAcctaaaaaatcgc
gaaattaagtacccgtgAAATTTTGTAACCcgcgaaatataataccaata
aggtaatttacttattttttattaaattctcttTAACCACCAAAAACAAT
TTGGTATATATCAGTATATATAACTAAACAATATCCTCTACTTTAGGCTA
TATAACAAAATTTACAATGTCTGAGTAATGTCTGAACTGACAGTTTTTTA
CagtaatgaaatattttttaccaattttttgcCCATTATTTTAATGCTAT
TTTTATATCAACATAGGTCAATTACAATAAACTACTTAAAGAAACAT
Run BLAST on NCBI

transcript from alignment at scaffold_419:349858..350254

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064615 ID=TCONS_00064615|Name=TCONS_00064615|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at scaffold_419:349858..350254 (Clytia hemisphaerica)
ATGTTTCTTTAAGTAGTTTATTGTAATTGACCTATGTTGATATAAAAATA
GCATTAAAATAATGGgcaaaaaattggtaaaaaatatttcattactGTAA
AAAACTGTCAGTTCAGACATTACTCAGACATTGTAAATTTTGTTATATAG
CCTAAAGTAGAGGATATTGTTTAGTTATATATACTGATATATACCAAATT
GTTTTTGGTGGTTAaagagaatttaataaaaaataagtaaattaccttat
tggtattatatttcgcgGGTTACAAAATTTcacgggtacttaatttcgcg
attttttaggTCAATGTGTTTCAACTAAAAGCGTCTTCTTCCGTTGTTGT
TGAGGTTGCAGCTGTCGTTGTTGTCATTGCTGTTGTAGAGGCAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040524XLOC_040524Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064615-exon-scaffold_419-1491911889:349858..350254TCONS_00064615-exon-scaffold_419-1491911889:349858..350254Clytia hemisphaericaexon
TCONS_00064615-exon-scaffold_419-1510915933:349858..350254TCONS_00064615-exon-scaffold_419-1510915933:349858..350254Clytia hemisphaericaexon
TCONS_00064615-exon-scaffold_419-1575043694:349858..350254TCONS_00064615-exon-scaffold_419-1575043694:349858..350254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:349858..350254 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63161	0.840077	1.70935	2.64693	3.03683	2.36572	1.69833	2.65651	0.47707	0.362372	0	0	1.00405	0.782035	0.107157	0.213801	0.485251	0.435606	0.950417	1.46943	0.729828	0.266988	0.846648	0.590143	0.607833	0.180826	0.776282	0	0.209455	1.17039
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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