TCONS_00064627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064627
Unique NameTCONS_00064627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064627 ID=TCONS_00064627|Name=TCONS_00064627|organism=Clytia hemisphaerica|type=transcript|length=411bp
GCCAAAATTGAAGGACCAAGGGCCTTAAACCAAATTACCTTAAAAACAAC
GGACTTGAGCAAGGGCTGAAGgctgaaaaataagaatttgaaatGGAGTA
AAAACAATCTGAAATAATAAAAGTTTAGATGGGGTGTAGCTACCGCCTAA
CACCCTCAGGTATTAAATTGATTACGAATCAAGAGTCCCAAAAGTGAAGG
ACCAAGGGCCTCTAACTAAATTACTTTAAAAACAACGGACTTGAGCAAGG
GCTGAAGGATGAGAAATAGGGCTTTGAAATGGAGTACAAACAATACTAAA
AGTTGAGATGGGTGTAGCTAACGCCTAACACCCTCAGGTGTTAAATTGAT
TACGAATCAAGAGTGCCAAAAGTGAAGGACCAAGGGCCTCTAACCAAATT
ACCTTAAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_419:503072..503482

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064627 ID=TCONS_00064627|Name=TCONS_00064627|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at scaffold_419:503072..503482 (Clytia hemisphaerica)
GTTTTTAAGGTAATTTGGTTAGAGGCCCTTGGTCCTTCACTTTTGGCACT
CTTGATTCGTAATCAATTTAACACCTGAGGGTGTTAGGCGTTAGCTACAC
CCATCTCAACTTTTAGTATTGTTTGTACTCCATTTCAAAGCCCTATTTCT
CATCCTTCAGCCCTTGCTCAAGTCCGTTGTTTTTAAAGTAATTTAGTTAG
AGGCCCTTGGTCCTTCACTTTTGGGACTCTTGATTCGTAATCAATTTAAT
ACCTGAGGGTGTTAGGCGGTAGCTACACCCCATCTAAACTTTTATTATTT
CAGATTGTTTTTACTCCatttcaaattcttatttttcagcCTTCAGCCCT
TGCTCAAGTCCGTTGTTTTTAAGGTAATTTGGTTTAAGGCCCTTGGTCCT
TCAATTTTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040536XLOC_040536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064627-exon-scaffold_419-1491911889:503072..503482TCONS_00064627-exon-scaffold_419-1491911889:503072..503482Clytia hemisphaericaexon
TCONS_00064627-exon-scaffold_419-1510915933:503072..503482TCONS_00064627-exon-scaffold_419-1510915933:503072..503482Clytia hemisphaericaexon
TCONS_00064627-exon-scaffold_419-1575043694:503072..503482TCONS_00064627-exon-scaffold_419-1575043694:503072..503482Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:503072..503482 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53764	2.17813	0.79544	0.389107	0.4737	0.374324	0	0	0	0.916622	0.355878	0.350911	0	0.121306	0	0	0.263693	0	0.186701	0.195369	0	0.248484	0.201377	0.183081	0.188569	0.504879	0.481654	0.257017	0.916586	0.794445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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