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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064638 ID=TCONS_00064638|Name=TCONS_00064638|organism=Clytia hemisphaerica|type=transcript|length=729bp
TGAAAATCGCATTATTGGGGCtattggcccttttttaaaagaaatgctTT
CGATGGACTTTGAAAGAAAcactttcaatgaaaatttctttttcacagtT
GAACAGCCACCTTTACGTTACCCGGTGATGAGACAACCACCACCCCGACT
AGTCCAGCCACCGCCGGCCCGAGGAGTCCAACAACCGCCAGTCCGAGGAG
TCCAGCCACCGCCGGCCCGAGGAGTCCAACAACCGCCAGTCCGAGGAGTC
CAGCCACCGCCGGCCCGAGGAGTCCGACCACCGCAAGTACAAGTCCGGCC
ACCACCACCTCTAATGGTCCAACAAGTGCCATTAAGAGAGGTCCGGCCAC
CACAACAGGCCCTCGCCCCAAGACCTCAAAGGCAGAGAGCAGCAAGGACA
CCTTTGTTAGATGAGGAACCTCCCCAAATACCACTTGTCAACCACGAGCA
TAATATTGTGGTTCATAATCATCGAAAGTgtGATGATTGGATTATAGAAA
CAGAAGCTTTTTACGTTCTGATGTATTGTGATGTTCAACCAAATTATATT
TATGTCTTTTATGTAGATTATATCTTGAACACATGTAGTTGTAAAACAAC
TGCATTTATCTTacacaaaaatatataaacctaaatgttaaaaataaatt
gTAACCGCAATACGACGGTAAAATTTGACTGTTTTTATTGGTAACGTCAG
AAAATCTTTATGTTGATAAATACAATATA Run BLAST on NCBI protein sequence of TCONS_00064638-protein >TCONS_00064638-protein ID=TCONS_00064638-protein|Name=TCONS_00064638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
ENRIIGAIGPFLKEMLSMDFERNTFNENFFFTVEQPPLRYPVMRQPPPRL
VQPPPARGVQQPPVRGVQPPPARGVQQPPVRGVQPPPARGVRPPQVQVRP
PPPLMVQQVPLREVRPPQQALAPRPQRQRAARTPLLDEEPPQIPLVNHEH
NIVVHNHRKCDDWIIETEAFYVLMYCDVQPNYIYVFYVDYILNTCSCKTT
AFILHKNI Run BLAST on NCBI transcript from alignment at scaffold_420:4759..7317+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064638 ID=TCONS_00064638|Name=TCONS_00064638|organism=Clytia hemisphaerica|type=transcript|length=2559bp|location=Sequence derived from alignment at scaffold_420:4759..7317+ (Clytia hemisphaerica)
TGAAAATCGCATTATTGGGGCtattggcccttttttaaaagaaatgctTT
CGATGGACTTTGAAAGAAAcactttcaatgaaaatttctttttcacagtT
GAACAGCCACCTTTACGTTACCCGGTGATGAGACAACCACCACCCCGACT
AGTCCAGCCACCGCCGGCCCGAGGAGTCCAACAACCGCCAGTCCGAGGAG
TCCAGCCACCGCCGGCCCGAGGAGTCCAACAACCGCCAGTCCGAGGAGTC
CAGCCACCGCCGGCCCGAGGAGTCCGACCACCGCAAGTACAAGTCCGGCC
ACCACCACCTCTAATGGTCCAACAAGTGCCATTAAGAGAGGTCCGGCCAC
CACAACAGGCCCTCGCCCCAAGACCTCAAAGGCAGAGAGCAGCAAGGACA
CCTTTGTTAGATGAGGAACCTCCCCAAATACCACTTGTCAACCACGAGCA
TAATATTGTGGTTCATAATCATCGAAAGTGTAAGTACTGATTAGCTGAAC
TCGTCCTCTTTCTCAGATTTTCtccaaaacaaattttcttaCCTCTTAGA
AACTattatacaaaaataaaatctcaaTCTGCAATAGCTGAACCCAGTAa
tgtactcttttgtgcttCATTGTAGGGGGgtcattttgcattttttggaa
aaaaaatcaccttCATATCACTTTATAATGACACCCCCCTTTTTATGACC
TTTATGCTacaaagtgccaaaattggccaaaaaccttcattttcctaagg
atttttagaaaaatcaggTCAATAGCACTTGATTATGCCAAgcccccccc
catttttatCTAGAGTACCCGcacccctgcttattccaccccctacaatt
aagcataCAAGAGTAATTAAAATGTCTTCTTTACTTCTTTACAAAGATGA
GTGACAAAAATAATATCACTTCTCTAACCTACTTCGAGTGTAgtatcaga
ggaatgtaaagagatagaaaaacagcttttctgattactcaaagttcaac
gatcacttcttattgaaaattctattgtaaaaacgttgattaggtcatta
aatgaaagtccagaaaagacggctcgccatacaaatcggacggtttctat
acgatttgacgataaaaatgaaaaattgtttttcctttttcaccGATTAG
Attactacaatcagtgacaaaatacttggcacaaaagggaaattccctac
gaaattttataaccacaaacaatttggaagcgctcttaATTAGGTTGgaa
aggtagagttttaacgctaaacTTAAGACTGAtctaaggatccaaaagtt
caagaatggtccagTAGGGATGAAATATAGCTTAGAAACCAATAAagccc
tcccagatcgaaataatcgatgaaatcaagttgaaggcccgaaaatgaca
ttctcgctcaaacttcaattttcgaaaaacggtaaaattgccaatatatt
atggcactgattgtagttcaatttttaagaataaggagcaatttttttgc
caatgtatagcaaaagaaattcttaacgcaatgatattaaattgattctt
gtaaaactgtcagaaatcgagtaaaatcaagatcaAGTTGTAATTTTNca
tgtccaaaattagttcaagtgttctattgggtacagattcaaagatattt
aGCAATGAAAAAGCTTTTTGTAAAGGAGAATAagggaaaaatttcaaaaa
ctatctaccaataataaactgagcatcttgatgttcttataaagctcggN
agctctagctttccatataatgGTGCTGTCATGATGCAGTTATATcatta
gaatcgctaggaacttctgagcaagaaaatataggtagcttttcgtatag
gagaggtgtacccaaaatataagcccttaaagtttgcaCATAATCAGGCt
tgtaaaacaaaagaattttgccacaacacgctaattatgcagattttttt
aaagcgacaacaaaagaaacttaTCAACTcaacataaactcccttaatgG
CAANGGAATAGACGTAGAAAAAATCCATGATCTCTACAACTAACCTAGAt
ccgagaaaaaaacaaactaatgaagcaatttcacacaaagttcAAATAAA
CCGATTTTAAGGcagtttttttgccaaaatttgcccaaattttttttatg
aaaatcgggcttcgtcacttTTTGGGTACTGTCATTGTgcatcactatgc
aaaaaatctgaaaagctggtaacagacaaacgNAGAAATTATGACTAGGC
TTGATTTCAAAGTCTATTGTAGAATATCTGGCAATTATTTccgatttttc
attttccaggtGATGATTGGATTATAGAAACAGAAGCTTTTTACGTTCTG
ATGTATTGTGATGTTCAACCAAATTATATTTATGTCTTTTATGTAGATTA
TATCTTGAACACATGTAGTTGTAAAACAACTGCATTTATCTTacacaaaa
atatataaacctaaatgttaaaaataaattgTAACCGCAATACGACGGTA
AAATTTGACTGTTTTTATTGGTAACGTCAGAAAATCTTTATGTTGATAAA
TACAATATA Coding sequence (CDS) from alignment at scaffold_420:4759..7317+ >TCONS_00064638 ID=TCONS_00064638|Name=TCONS_00064638|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_420:4759..7317+ (Clytia hemisphaerica)
GAAAATCGCATTATTGGGGCtattggcccttttttaaaagaaatgctTTC
GATGGACTTTGAAAGAAAcactttcaatgaaaatttctttttcacagtTG
AACAGCCACCTTTACGTTACCCGGTGATGAGACAACCACCACCCCGACTA
GTCCAGCCACCGCCGGCCCGAGGAGTCCAACAACCGCCAGTCCGAGGAGT
CCAGCCACCGCCGGCCCGAGGAGTCCAACAACCGCCAGTCCGAGGAGTCC
AGCCACCGCCGGCCCGAGGAGTCCGACCACCGCAAGTACAAGTCCGGCCA
CCACCACCTCTAATGGTCCAACAAGTGCCATTAAGAGAGGTCCGGCCACC
ACAACAGGCCCTCGCCCCAAGACCTCAAAGGCAGAGAGCAGCAAGGACAC
CTTTGTTAGATGAGGAACCTCCCCAAATACCACTTGTCAACCACGAGCAT
AATATTGTGGTTCATAATCATCGAAAGTgtGATGATTGGATTATAGAAAC
AGAAGCTTTTTACGTTCTGATGTATTGTGATGTTCAACCAAATTATATTT
ATGTCTTTTATGTAGATTATATCTTGAACACATGTAGTTGTAAAACAACT
GCATTTATCTTacacaaaaatatataaGAAAATCGCATTATTGGGGCtat
tggcccttttttaaaagaaatgctTTCGATGGACTTTGAAAGAAAcactt
tcaatgaaaatttctttttcacagtTGAACAGCCACCTTTACGTTACCCG
GTGATGAGACAACCACCACCCCGACTAGTCCAGCCACCGCCGGCCCGAGG
AGTCCAACAACCGCCAGTCCGAGGAGTCCAGCCACCGCCGGCCCGAGGAG
TCCAACAACCGCCAGTCCGAGGAGTCCAGCCACCGCCGGCCCGAGGAGTC
CGACCACCGCAAGTACAAGTCCGGCCACCACCACCTCTAATGGTCCAACA
AGTGCCATTAAGAGAGGTCCGGCCACCACAACAGGCCCTCGCCCCAAGAC
CTCAAAGGCAGAGAGCAGCAAGGACACCTTTGTTAGATGAGGAACCTCCC
CAAATACCACTTGTCAACCACGAGCATAATATTGTGGTTCATAATCATCG
AAAGTgtGATGATTGGATTATAGAAACAGAAGCTTTTTACGTTCTGATGT
ATTGTGATGTTCAACCAAATTATATTTATGTCTTTTATGTAGATTATATC
TTGAACACATGTAGTTGTAAAACAACTGCATTTATCTTacacaaaaatat
ataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064638-exon-scaffold_420-1491911889:4759..5237 | TCONS_00064638-exon-scaffold_420-1491911889:4759..5237 | Clytia hemisphaerica | exon |
| TCONS_00064638-exon-scaffold_420-1510915933:4759..5237 | TCONS_00064638-exon-scaffold_420-1510915933:4759..5237 | Clytia hemisphaerica | exon |
| TCONS_00064638-exon-scaffold_420-1575043694:4759..5237 | TCONS_00064638-exon-scaffold_420-1575043694:4759..5237 | Clytia hemisphaerica | exon |
| TCONS_00064638-exon-scaffold_420-1491911889:7068..7317 | TCONS_00064638-exon-scaffold_420-1491911889:7068..7317 | Clytia hemisphaerica | exon |
| TCONS_00064638-exon-scaffold_420-1510915933:7068..7317 | TCONS_00064638-exon-scaffold_420-1510915933:7068..7317 | Clytia hemisphaerica | exon |
| TCONS_00064638-exon-scaffold_420-1575043694:7068..7317 | TCONS_00064638-exon-scaffold_420-1575043694:7068..7317 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:4759..7317 + |
Blast
The following BLAST results are available for this feature:
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