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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064650 ID=TCONS_00064650|Name=TCONS_00064650|organism=Clytia hemisphaerica|type=transcript|length=2521bp
aaaaattttaatatttgatACATTGAAACACTCAACTAATTTAACTAATC
GATCCAAATATATTATGCTGTTCTGACTGTACTGACAGTATTAATTTGAA
TGTAATTTGGATTTCTTATACTTTTTGAGaagtaatttttgtaaaacttc
GCAGAGATGCGAACGCTATTGATcttttttaatttagttttggCCGTTTT
TTGTTATACTGAGCATTATGgcCATTCATATTCGAACTGTATCAAACCAC
GGTATTGCCGATACTGTTCTTGGTACGACAGATTTTCGAGTTATCGAAGT
ATTGATGGCACATGTAATAATTTGAGGTATTTCACCTGGGGTGCCACCGA
TACACCGCTTCGACGCGCTTGCAGAACACGGCAATATTCAGGAGCGGAGT
ACGCTGATAAATACAAATACGATGTACCTCGTGGCTACCCTGGTTTTGCA
CCAAAACTTCCACCGGCCAATCACGTTTCAGAAATGTTGTTTGACGTTAA
GAAAGAGAACACAGGAAATAAACATTccatttcaacaattttcaTGACTT
TCGGACAGTTTTTGGACCACGACATCACGGACACACCCAGTGAAGGCTGT
CACGCCCAAACGTGTGATCAAGTTGCATCCTTCAAATATCCTTGTTTCTC
TATCTTGTGGGACGAGAACAACTACTCCAAGTGCACTCCATTTGGAAGAT
CGCGCGCCATCTGTAGACGGAGAAAGGGAACACGACAACAGGTCAATATT
TTGACCTCCTTCGTAGATGGCTCACAAATTTATGGCGCAAAGAAAGAACT
TTTCCACGATTTACGTAAAAATGATGGATCAGGTCTCATGAAACTAAAGG
ACAACTTGATGGAATTAGATCCAAAAATCAAACATTGCCACACACATGGT
GGATGTTCATTGGTGGGTGACCACAGAGGTGATGAAAACATCGCCCTTCA
TTCAATGCACACCTTATGGGTTCGCGAACATAATCGTATTGCGAAAGAAC
TCAAAGAGCTGAACCCTCACTGGGACGGAGAACGTGTGTTCCAGGAAGCA
CGAAAAATCAATACAGCTGTTCTCCAACATATTGTTTTTAAAGAATGGTT
GCCAATGATCGTGCGACCTTTCCGATACAGAGGATACAGACCACGAGTCA
ATCCCAACATCATTAACTCATTTGCTACCGCAGCCTTCCGTTTCGGACAC
AGTTTGATTCCAAACTCCTTTGAACTGTTAGACAAAAACTTTGACCCCAT
CAACAAGCCAATCACACTTCAGCACGCCTTTTTCAACCGAAAACCAATCA
ATCAGTACGGTATCGAACCGACCATGTTTGGGTTGCTAGGTAACAAGTCT
GAAGAAGTCGATACTGATTTTTCTTTCTCCATCGCACGTCGTTTGTTTGT
CGCTCCCGGCAAAGAAGACCATGTGGACTTGATGGCGCGAAACATCCAAC
GAGGACGAGATCACGGCCTGCCAACGTACGGTAAATTCCGTCGCTGGTGT
CGATTGAGGCCGATCCGTACCTGGGACCAACTCAAAAAACACATGCCTGC
CAAAGCTGTTCACGCATTCAAAGAGTTGTACCCAACGCCCAGTGATATTG
AACTTTTTCCTGCTGGGATGGCAGAGAATCACCGTGGCCGAAGAATTGTT
GGTCCCACTTTCGAATGTATTATTCGACGTCAGTTTAATCGTCTACAAAA
AGGTGATCGCTTCTATTATCGAGCCCGAGGTGTCTTCTCCAGAGCGCAAC
GTACGGCTATCTACAGAACTCGCTTATCCACTGTCCTCTGCAACAACCTC
GAACGTGTAGTATCCGTACAGAGACATGCTTTCTATGTAGCTGGTTCACG
AAATAAGCGAATCTCTTGCAACCGTATCCCTAAACTTGAATTATGGGCGT
GGAAGGAAAAACCTAAACACAAAGGCAAGAGAGATGAAATCTCATCTGAC
ACTGTCTCGAATAAGAAGGATGTTGCTTCTTCCGTGGAGATGGATATCGA
AGAGGAGTTACGTCAGCTTCACGCCAAGAGGGAGGCCACCCCAACCACCC
CTACAACCACGACAGTAGTAGGTAGCGAGAGGCAGAAGAGTGGTTTCATT
ACGGACGAGCCGTACAACATCGTAGATGAGGAAGAGGAAGCAATGATTGA
TAACATGGTCGGGTTGACTGACATCGGTAGTGAGGTGGCTGACCCTGAAG
TCGACCTAGACTATGTAGACGGGGCGGAACACCCTACAACCACCCCTACA
ACTGGAGATGGAAACTCAATTGATGAATTTGAGGTGGAAGGAGAGATCCC
AGAGGACGATTTGGCAGGATTAGACGAAGAGGGGTTTGAAACTGAGACTC
ATGCTAAAAAGGACGAGCTCTGGTGAACAGCTATCGCATCAATTTGAAAA
ACTAGTTCTTGGCAATTTCTGTAAACATAACCTTCTTTTTGTCAAATATA
CTCAATTTTTATTCTACTTGTAATTTAATTTATTCcttatttgtaatttt
tcatatttcctCTGTAATCCG Run BLAST on NCBI transcript from alignment at scaffold_420:307338..311050+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064650 ID=TCONS_00064650|Name=TCONS_00064650|organism=Clytia hemisphaerica|type=transcript|length=3713bp|location=Sequence derived from alignment at scaffold_420:307338..311050+ (Clytia hemisphaerica)
aaaaattttaatatttgatACATTGAAACACTCAACTAATTTAACTAATC
GATCCAAATATATTATGCTGTTCTGACTGTACTGACAGTATTAATTTGAA
TGTAATTTGGATTTCTTATACTTTTTGAGaagtaatttttgtaaaacttc
GCAGAGATGCGAACGCTATTGATcttttttaatttagttttggCCGTTTT
TTGTTATACTGAGCATTATGGTAAGTCACTTTATCAATTGACTGCCTTTT
CAgcaatttttgttgttgttgttctaAACTGTTGATTGTCTGTTAATTTT
GTAATCAGCAGACCGCTATCAGTGAAGTGAAAAGGTGCTCGTTTATTTAC
TTTGCTCTACAATTTTACTTACACCACTACAGTAGTGCTTCACCCTAGAT
GAGTAGGTCCAGAAAAcccaaaactcaaaaaagagaTTGACTCTTTAATT
AGATTCAtcagttttgttttcaatttcatcTTGATTGGGGCTCGTCAAAA
ACTCGACAGAttacttttttcacttttcaggcCATTCATATTCGAACTGT
ATCAAACCACGGTATTGCCGATACTGTTCTTGGTACGACAGATTTTCGAG
TTATCGAAGTATTGATGGCACATGTAATAATTTGAGGTATTTCACCTGGG
GTGCCACCGATACACCGCTTCGACGCGCTTGCAGTAAGTCAACTTTCACT
TCAAAATAGATATTCTCTTGATGAGTTCACCAGCATTAGGTTTATTTTGT
TTCGTACCAATAATTTATTTATCTAAGTAGACTGGTAGTTTCTATTCTTA
AAATTCAAATGAATCAGTCTTTTTGCTTTGTTGAAAATATATGCTGCTCT
TCAAGTCAATCTTTTCAAAACGATATTTCTCCTTTCTTAGGAACACGGCA
ATATTCAGGAGCGGAGTACGCTGATAAATACAAATACGATGTACCTCGTG
GCTACCCTGGTTTTGCACCAAAACTTCCACCGGCCAATCACGTTTCAGAA
ATGTTGTTTGACGTTAAGAAAGAGAACACAGGAAATAAACATTccatttc
aacaattttcaTGACTTTCGGACAGTTTTTGGACCACGACATCACGGACA
CACCCAGTGAAGGCTGTCACGCCCAAACGTAAGTCTCGTTTGATTCAGCA
ATCACTTCTTGTCCTTCCCAACCAATCTGACCTGTCTATATATGTAAAGT
ATCCACAAAATGGCCTTCTTTTGGTCTTCATTTTCCTCCGAAGTGACCTG
TTCAGTGAAATTCGTAAATTTTCTTCTCCATTACTTGAAttctttatttc
aatttttttatcaaataattttcACAGTGATACACTTTTTGTCCACATGG
CTATTCAATTCATCATCATATTCTTATCTTAGGTGTGATCAAGTTGCATC
CTTCAAATATCCTTGTTTCTCTATCTTGTGGGACGAGAACAACTACTCCA
AGTGCACTCCATTTGGAAGATCGCGCGCCATCTGTAGACGGAGAAAGGGA
ACACGACAACAGGTCAATATTTTGACCTCCTTCGTAGATGGCTCACAAAT
TTATGGCGCAAAGAAAGAACTTTTCCACGATTTACGTAAAAATGATGGTA
AGTAAGAATTATTCTGAAGCTTTTTTACCTCTAAGTTACCCTTCGAAAAA
GTAAAGTGTAAAATGACGAAATATTGCGCCAGCGAATACTTTTAAACGTC
ACCTTTTATATTACacaatcacgcaaaaaaaatacaaatcacgttatcac
gagttaaattttctttctatcacGATAAAGTTAATCACGTTGGTTCCTCT
GATCGCACGCAACCacgcactttaaaatcttaaatcctGCCATCATGAAA
ACCACTGGAAGGCCTCTAttagtttaatatttttgtatctTTGAGGAACT
CCAAAAACCATTATCTCAACAGTTAAACAATGTAGACTTGAATCTACATT
TATACTACTTACGCCCTTCTAAAGTTGGAAACTGGTCATCACGTACTCCT
TCTCTTCTTTCATTCTAGGATCAGGTCTCATGAAACTAAAGGACAACTTG
ATGGAATTAGATCCAAAAATCAAACATTGCCACACACATGGTGGATGTTC
ATTGGTGGGTGACCACAGAGGTGATGAAAACATCGCCCTTCATTCAATGC
ACACCTTATGGGTTCGCGAACATAATCGTATTGCGAAAGAACTCAAAGAG
CTGAACCCTCACTGGGACGGAGAACGTGTGTTCCAGGAAGCACGAAAAAT
CAATACAGCTGTTCTCCAACATATTGTTTTTAAAGAATGGTTGCCAATGA
TCGTGCGACCTTTCCGATACAGAGGATACAGACCACGAGTCAATCCCAAC
ATCATTAACTCATTTGCTACCGCAGCCTTCCGTTTCGGACACAGTTTGAT
TCCAAACTCCTTTGAACTGTTAGACAAAAACTTTGACCCCATCAACAAGC
CAATCACACTTCAGCACGCCTTTTTCAACCGAAAACCAATCAATCAGTAC
GGTATCGAACCGACCATGTTTGGGTTGCTAGGTAACAAGTCTGAAGAAGT
CGATACTGATTTTTCTTTCTCCATCGCACGTCGTTTGTTTGTCGCTCCCG
GCAAAGAAGACCATGTGGACTTGATGGCGCGAAACATCCAACGAGGACGA
GATCACGGCCTGCCAACGTACGGTAAATTCCGTCGCTGGTGTCGATTGAG
GCCGATCCGTACCTGGGACCAACTCAAAAAACACATGCCTGCCAAAGCTG
TTCACGCATTCAAAGAGTTGTACCCAACGCCCAGTGATATTGAACTTTTT
CCTGCTGGGATGGCAGAGAATCACCGTGGCCGAAGAATTGTTGGTCCCAC
TTTCGAATGTATTATTCGACGTCAGTTTAATCGTCTACAAAAAGGTGATC
GCTTCTATTATCGAGCCCGAGGTGTCTTCTCCAGAGCGCAACGTACGGCT
ATCTACAGAACTCGCTTATCCACTGTCCTCTGCAACAACCTCGAACGTGT
AGTATCCGTACAGAGACATGCTTTCTATGTAGCTGGTTCACGAAATAAGC
GAATCTCTTGCAACCGTATCCCTAAACTTGAATTATGGGCGTGGAAGGAA
AAACCTAAACACAAAGGCAAGAGAGATGAAATCTCATCTGACACTGTCTC
GAATAAGAAGGATGTTGCTTCTTCCGTGGAGATGGATATCGAAGAGGAGT
TACGTCAGCTTCACGCCAAGAGGGAGGCCACCCCAACCACCCCTACAACC
ACGACAGTAGTAGGTAGCGAGAGGCAGAAGAGTGGTTTCATTACGGACGA
GCCGTACAACATCGTAGATGAGGAAGAGGAAGCAATGATTGATAACATGG
TCGGGTTGACTGACATCGGTAGTGAGGTGGCTGACCCTGAAGTCGACCTA
GACTATGTAGACGGGGCGGAACACCCTACAACCACCCCTACAACTGGAGA
TGGAAACTCAATTGATGAATTTGAGGTGGAAGGAGAGATCCCAGAGGACG
ATTTGGCAGGATTAGACGAAGAGGGGTTTGAAACTGAGACTCATGCTAAA
AAGGACGAGCTCTGGTGAACAGCTATCGCATCAATTTGAAAAACTAGTTC
TTGGCAATTTCTGTAAACATAACCTTCTTTTTGTCAAATATACTCAATTT
TTATTCTACTTGTAATTTAATTTATTCcttatttgtaatttttcatattt
cctCTGTAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064650-exon-scaffold_420-1491911889:307338..307557 | TCONS_00064650-exon-scaffold_420-1491911889:307338..307557 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1510915933:307338..307557 | TCONS_00064650-exon-scaffold_420-1510915933:307338..307557 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1575043694:307338..307557 | TCONS_00064650-exon-scaffold_420-1575043694:307338..307557 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1491911889:307868..308020 | TCONS_00064650-exon-scaffold_420-1491911889:307868..308020 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1510915933:307868..308020 | TCONS_00064650-exon-scaffold_420-1510915933:307868..308020 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1575043694:307868..308020 | TCONS_00064650-exon-scaffold_420-1575043694:307868..308020 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1491911889:308228..308465 | TCONS_00064650-exon-scaffold_420-1491911889:308228..308465 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1510915933:308228..308465 | TCONS_00064650-exon-scaffold_420-1510915933:308228..308465 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1575043694:308228..308465 | TCONS_00064650-exon-scaffold_420-1575043694:308228..308465 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1491911889:308720..308934 | TCONS_00064650-exon-scaffold_420-1491911889:308720..308934 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1510915933:308720..308934 | TCONS_00064650-exon-scaffold_420-1510915933:308720..308934 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1575043694:308720..308934 | TCONS_00064650-exon-scaffold_420-1575043694:308720..308934 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1491911889:309356..311050 | TCONS_00064650-exon-scaffold_420-1491911889:309356..311050 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1510915933:309356..311050 | TCONS_00064650-exon-scaffold_420-1510915933:309356..311050 | Clytia hemisphaerica | exon |
| TCONS_00064650-exon-scaffold_420-1575043694:309356..311050 | TCONS_00064650-exon-scaffold_420-1575043694:309356..311050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:307338..311050 + |
Blast
BLAST of TCONS_00064650 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2) HSP 1 Score: 337.421 bits (864), Expect = 1.675e-98 Identity = 217/610 (35.57%), Postives = 309/610 (50.66%), Query Frame = 1
Query: 226 SYSNCIKPRYCRYCSWYDRFSSYRSIDGTCNNLRYFTWGATDTPLRRACRTRQYSGAEYADKYKYDVPRG------YPGFAPKLPPANHVSEMLFDVKKENTGNKHSISTIFMTFGQFLDHDITDTPSEGCHA-----QTCDQVASFKYPCFSILWDENNY-----SKCTPFGRSRAICRRRKGT--------RQQVNILTSFVDGSQIYGAKKELFHDLRKNDGSGLMKLKDNLMELDPKIKHCHTHGG--------------CSLVGDHRGDENIALHSMHTLWVREHNRIAKELKELNPHWDGERVFQEARKINTAVLQHIVFKEWLPMIVRPF------RYRGYRPRVNPNIINSFATAAFRFGHSLIPNSFELLDKNFDPINKP-ITLQHAFFNR-KPINQYGIEPTMFGLLG--NKSEEVDTDFSFSIARRLFVAPGKEDHVDLMARNIQRGRDHGLPTYGKFRRWCRLRPIRTWDQLKKHMPAKAV-HAFKELYPTPSDIELFPAGMAENHRGRRIVGPTFECIIRRQFNRLQKGDRFYYRARGVFSRAQRTAIYRTRLSTVLCNNLERVVSVQRHAFYVAGSRNKRISCNRIPKLELWAWKE 1908
+ S C R CS YR+ DGTCNNL++ WGA+ T R ++ +G ++ PRG Y G A LP VS L + E + + M +GQFLDHD+ T A Q C V S PCFS++ N+ ++C F RS +C + R+Q+N LTS++D S +YG+ + +R + S L+ +++ K G C L GDHR +E + L SMHTLW REHNRIA EL +LNPHWDG+ ++ E RKI A +QHI ++ WLP I+ Y GY P +N I N+FATAAFRFGH+L+ LD+NF PI + + L AFF+ + +N+ GI+P + GL G K + + RLF + +DL A NIQRGRDHG+P Y +R +C L T++ LK + + K LY + +I+LFPA + E+ +GPT C++ QF RL+ GDR +Y GVFS AQ T I +T L+ +LC+N + + VQ F VA + SC+ IP+++L W++
Sbjct: 719 NLSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENG--------FNTPRGINPHRLYNGHA--LPMPRLVSTTL--IGTETVTPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVCSNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIR-DLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLF-SMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYGSCDEIPRVDLRVWQD 1314
The following BLAST results are available for this feature:
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