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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064681 ID=TCONS_00064681|Name=TCONS_00064681|organism=Clytia hemisphaerica|type=transcript|length=1301bp
AATTAAATCCAacctaataaaaaaaagaaagaagtaaaaaagttaaaagc
acgttaaaagtaaaataaactATAATTTTAAATGCAACCTTTGCAGGTGC
ATATTGGGGAAACAGATTTCAGAGCAGCCTTAAATCTATTTAGTGAGTAG
AGATTTTTGATATTGGATGGTAATTTGTTCGAGGTGGAGACTGCTCTGAA
ATCAAAGGTATTTACAGCAAACACACTGTCATTCACTGGTGAATGCTGTT
ACACCTATCATTGTGATGGATCAACAGCAGCAAGATCAAGATGCCAATCC
AAAGTACAGTCATCCTGAGTTGGTCAATAAGTTGATATCACCTGCTCCTG
GACTCAAATGTGCTCACCTCAACATTAATGGACTTTTTGCCAAACTCGAG
GATGTTGAAATTATCCTATCCGAAACAAAACTTGACATATTTGCTATAAC
TGAAACTCACCTTGAAGAAAAGCACGATGACGATGATCTAAAAATTGATA
ACTACCTTTTCCTACGTAATGATCGAAAGAAGAAAACCTGGGGAGGAGTT
CTTGTATATTACCGAAAAGACCTAGACATTGATGAGATTGATATTAAAAC
TGAAATTGAATCAATATGGTTTGATATTATTGTTaattcacaaaaatatt
tctttggatGTATCTATCGTCCaccaaaattcaagaaattccTCCAAGAT
ATCAGCAAAGTCCTGGAAGGTATAAACCATCGATCCAACATTTTTCTTCT
CGGAGATTTCAATATAGACTTATCGGAAGACAATGATAAATTAACAAGAG
ATTTTAAATTCATCCTTGCAACAAATAGTCTCACTAACGTCATCATGAAA
TTTACCAGAATTACAGCGACGTCAAAGACACTAATTGATCTTGCAATCAC
TGCTAATCCAGACAAAATCACCAAGAGCGGAACTTATGCTCCCGGGATAT
CAGATCATGATCTAATATACATTGTTATCGGTCTACGTTGGAAGAGAAAA
CCTCCAAAAATCATCTTCTTTAAAAACTACAGAAACGTTGACATCATTAA
ATTGAAGGAGGACCTTGATACTTGTCCATGGGATATAATGTCTCTATTTG
ATGATGTTGATGACAGATTATGGTGCTGGGAACATCTCTTCAAAGGCATC
ATAGCTGATCACGTACCTTCAAGGAAGGTTAAAGTAAGAACAGAAAATCA
GCCATGGATGAATGGTGAAGTGAGGAAACAGCTAAACCAAAGGTTTAATC
TCTTGAACATTGCTAGAACTACcccaaaacattcaaaagagTGGAAGGAG
N Run BLAST on NCBI protein sequence of TCONS_00064681-protein >TCONS_00064681-protein ID=TCONS_00064681-protein|Name=TCONS_00064681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MDQQQQDQDANPKYSHPELVNKLISPAPGLKCAHLNINGLFAKLEDVEII
LSETKLDIFAITETHLEEKHDDDDLKIDNYLFLRNDRKKKTWGGVLVYYR
KDLDIDEIDIKTEIESIWFDIIVNSQKYFFGCIYRPPKFKKFLQDISKVL
EGINHRSNIFLLGDFNIDLSEDNDKLTRDFKFILATNSLTNVIMKFTRIT
ATSKTLIDLAITANPDKITKSGTYAPGISDHDLIYIVIGLRWKRKPPKII
FFKNYRNVDIIKLKEDLDTCPWDIMSLFDDVDDRLWCWEHLFKGIIADHV
PSRKVKVRTENQPWMNGEVRKQLNQRFNLLNIARTTPKHSKEWKE Run BLAST on NCBI transcript from alignment at scaffold_420:132958..134258 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064681 ID=TCONS_00064681|Name=TCONS_00064681|organism=Clytia hemisphaerica|type=transcript|length=1301bp|location=Sequence derived from alignment at scaffold_420:132958..134258 (Clytia hemisphaerica)
NCTCCTTCCActcttttgaatgttttgggGTAGTTCTAGCAATGTTCAAG
AGATTAAACCTTTGGTTTAGCTGTTTCCTCACTTCACCATTCATCCATGG
CTGATTTTCTGTTCTTACTTTAACCTTCCTTGAAGGTACGTGATCAGCTA
TGATGCCTTTGAAGAGATGTTCCCAGCACCATAATCTGTCATCAACATCA
TCAAATAGAGACATTATATCCCATGGACAAGTATCAAGGTCCTCCTTCAA
TTTAATGATGTCAACGTTTCTGTAGTTTTTAAAGAAGATGATTTTTGGAG
GTTTTCTCTTCCAACGTAGACCGATAACAATGTATATTAGATCATGATCT
GATATCCCGGGAGCATAAGTTCCGCTCTTGGTGATTTTGTCTGGATTAGC
AGTGATTGCAAGATCAATTAGTGTCTTTGACGTCGCTGTAATTCTGGTAA
ATTTCATGATGACGTTAGTGAGACTATTTGTTGCAAGGATGAATTTAAAA
TCTCTTGTTAATTTATCATTGTCTTCCGATAAGTCTATATTGAAATCTCC
GAGAAGAAAAATGTTGGATCGATGGTTTATACCTTCCAGGACTTTGCTGA
TATCTTGGAggaatttcttgaattttggtGGACGATAGATACatccaaag
aaatatttttgtgaattAACAATAATATCAAACCATATTGATTCAATTTC
AGTTTTAATATCAATCTCATCAATGTCTAGGTCTTTTCGGTAATATACAA
GAACTCCTCCCCAGGTTTTCTTCTTTCGATCATTACGTAGGAAAAGGTAG
TTATCAATTTTTAGATCATCGTCATCGTGCTTTTCTTCAAGGTGAGTTTC
AGTTATAGCAAATATGTCAAGTTTTGTTTCGGATAGGATAATTTCAACAT
CCTCGAGTTTGGCAAAAAGTCCATTAATGTTGAGGTGAGCACATTTGAGT
CCAGGAGCAGGTGATATCAACTTATTGACCAACTCAGGATGACTGTACTT
TGGATTGGCATCTTGATCTTGCTGCTGTTGATCCATCACAATGATAGGTG
TAACAGCATTCACCAGTGAATGACAGTGTGTTTGCTGTAAATACCTTTGA
TTTCAGAGCAGTCTCCACCTCGAACAAATTACCATCCAATATCAAAAATC
TCTACTCACTAAATAGATTTAAGGCTGCTCTGAAATCTGTTTCCCCAATA
TGCACCTGCAAAGGTTGCATTTAAAATTATagtttattttacttttaacg
tgcttttaacttttttacttctttcttttttttattaggtTGGATTTAAT
T Coding sequence (CDS) from alignment at scaffold_420:132958..134258 >TCONS_00064681 ID=TCONS_00064681|Name=TCONS_00064681|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_420:132958..134258 (Clytia hemisphaerica)
CTCCTTCCActcttttgaatgttttgggGTAGTTCTAGCAATGTTCAAGA
GATTAAACCTTTGGTTTAGCTGTTTCCTCACTTCACCATTCATCCATGGC
TGATTTTCTGTTCTTACTTTAACCTTCCTTGAAGGTACGTGATCAGCTAT
GATGCCTTTGAAGAGATGTTCCCAGCACCATAATCTGTCATCAACATCAT
CAAATAGAGACATTATATCCCATGGACAAGTATCAAGGTCCTCCTTCAAT
TTAATGATGTCAACGTTTCTGTAGTTTTTAAAGAAGATGATTTTTGGAGG
TTTTCTCTTCCAACGTAGACCGATAACAATGTATATTAGATCATGATCTG
ATATCCCGGGAGCATAAGTTCCGCTCTTGGTGATTTTGTCTGGATTAGCA
GTGATTGCAAGATCAATTAGTGTCTTTGACGTCGCTGTAATTCTGGTAAA
TTTCATGATGACGTTAGTGAGACTATTTGTTGCAAGGATGAATTTAAAAT
CTCTTGTTAATTTATCATTGTCTTCCGATAAGTCTATATTGAAATCTCCG
AGAAGAAAAATGTTGGATCGATGGTTTATACCTTCCAGGACTTTGCTGAT
ATCTTGGAggaatttcttgaattttggtGGACGATAGATACatccaaaga
aatatttttgtgaattAACAATAATATCAAACCATATTGATTCAATTTCA
GTTTTAATATCAATCTCATCAATGTCTAGGTCTTTTCGGTAATATACAAG
AACTCCTCCCCAGGTTTTCTTCTTTCGATCATTACGTAGGAAAAGGTAGT
TATCAATTTTTAGATCATCGTCATCGTGCTTTTCTTCAAGGTGAGTTTCA
GTTATAGCAAATATGTCAAGTTTTGTTTCGGATAGGATAATTTCAACATC
CTCGAGTTTGGCAAAAAGTCCATTAATGTTGAGGTGAGCACATTTGAGTC
CAGGAGCAGGTGATATCAACTTATTGACCAACTCAGGATGACTGTACTTT
GGATTGGCATCTTGATCTTGCTGCTGTTGATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064681-exon-scaffold_420-1491911889:132958..134258 | TCONS_00064681-exon-scaffold_420-1491911889:132958..134258 | Clytia hemisphaerica | exon |
| TCONS_00064681-exon-scaffold_420-1510915933:132958..134258 | TCONS_00064681-exon-scaffold_420-1510915933:132958..134258 | Clytia hemisphaerica | exon |
| TCONS_00064681-exon-scaffold_420-1575043694:132958..134258 | TCONS_00064681-exon-scaffold_420-1575043694:132958..134258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:132958..134258 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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