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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064687 ID=TCONS_00064687|Name=TCONS_00064687|organism=Clytia hemisphaerica|type=transcript|length=1144bp
aataaaagaaacaaaatttatccatatatatttaaaaatataaGAATACC
AGAAGGTAATCAATGTTAAATATTatttacaaacaaaaaaacatcgATCT
TATTTTCTCGTTTATGAGTTGTAGTCCTAGTAGTGTAAACATTCACGAAA
ACTGTGTCTCGATTATTATTTCTGTCCCGTCGTAAACATTTTCTCAACAT
CAAACGAACTTCTCGACAGCCAAAAACGTAAATAAAGAAATCAACAATGA
TACCAGCACGAAATGAAAAGCTGAGATAGAGTTCCACAGACTGtgacatt
tctttgttttgacgGTTGAACACCAAGGCGACGATATCAGGAACCACAAC
GAAAATGGTGAAAGATAAAATCAAAGCTAGGACCAttaaaaaaggttttc
tccTTCGTTTGTGACTGCTAGATGAAGTTCGCGAGGATTCAGTTTCATTA
AGAGACAGTTTACGTTGTGCAATCTTGTGTAAAATATATCCGTACGCCAA
CAGTGCGACAATGACAAAAACTCCGTCTAAAGGAAGCCATGCAAATTGTG
AGAAAACATCATATGCTTGTTGGATGCTATGAAGAAAGTTGATTGAAAGG
ATGGTGAACAGTATATTAATGAAGTAAATGGACACAATGacgattgttgt
tttttttgtggtCCAGATCAAGAGATATTTCAAGTTATACCGCACTGCAA
GGTACCTGTCGAAAGTTAATGCAATTAAGATCATGGTTAGTTGAATGAAT
ACACCACTACTTCCAATGAAAACCCATAATTCAGCATTAGGGTGGTCTGT
GACTTTTGCTAGAATGCGAAATGACCCACTGATTGAATATAAGGTTTCAG
TGAAGCTCAAATGTAAGAGATAGAGTGTTTGTGATTTGTTGTATTGATTT
GTTACTTTCTTTGCCCTCCATAGCAAAACAAATCCAATAGAATGCAACAC
TGTTGAAAATAAACTCAGAATAACCACCAGTAGCTGCTTTGTATCCATTC
ATTCCTCTTCAACACACAACTCTCCACTGTTTACTATCTACGTAATTCAA
TTTGTatcttgacaaaataaaaaccTAATTCCCAATGGTTATTCTAAAGT
AATTTCCAAGATATTTTTCCAACATTAATTAAGCAAGCTCAAAA Run BLAST on NCBI protein sequence of TCONS_00064687-protein >TCONS_00064687-protein ID=TCONS_00064687-protein|Name=TCONS_00064687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MDTKQLLVVILSLFSTVLHSIGFVLLWRAKKVTNQYNKSQTLYLLHLSFT
ETLYSISGSFRILAKVTDHPNAELWVFIGSSGVFIQLTMILIALTFDRYL
AVRYNLKYLLIWTTKKTTIVIVSIYFINILFTILSINFLHSIQQAYDVFS
QFAWLPLDGVFVIVALLAYGYILHKIAQRKLSLNETESSRTSSSSHKRRR
KPFLMVLALILSFTIFVVVPDIVALVFNRQNKEMSQSVELYLSFSFRAGI
IVDFFIYVFGCREVRLMLRKCLRRDRNNNRDTVFVNVYTTRTTTHKRENK
IDVFLFVNNI Run BLAST on NCBI transcript from alignment at scaffold_420:233774..234917 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064687 ID=TCONS_00064687|Name=TCONS_00064687|organism=Clytia hemisphaerica|type=transcript|length=1144bp|location=Sequence derived from alignment at scaffold_420:233774..234917 (Clytia hemisphaerica)
TTTTGAGCTTGCTTAATTAATGTTGGAAAAATATCTTGGAAATTACTTTA
GAATAACCATTGGGAATTAggtttttattttgtcaagatACAAATTGAAT
TACGTAGATAGTAAACAGTGGAGAGTTGTGTGTTGAAGAGGAATGAATGG
ATACAAAGCAGCTACTGGTGGTTATTCTGAGTTTATTTTCAACAGTGTTG
CATTCTATTGGATTTGTTTTGCTATGGAGGGCAAAGAAAGTAACAAATCA
ATACAACAAATCACAAACACTCTATCTCTTACATTTGAGCTTCACTGAAA
CCTTATATTCAATCAGTGGGTCATTTCGCATTCTAGCAAAAGTCACAGAC
CACCCTAATGCTGAATTATGGGTTTTCATTGGAAGTAGTGGTGTATTCAT
TCAACTAACCATGATCTTAATTGCATTAACTTTCGACAGGTACCTTGCAG
TGCGGTATAACTTGAAATATCTCTTGATCTGGaccacaaaaaaaacaaca
atcgtCATTGTGTCCATTTACTTCATTAATATACTGTTCACCATCCTTTC
AATCAACTTTCTTCATAGCATCCAACAAGCATATGATGTTTTCTCACAAT
TTGCATGGCTTCCTTTAGACGGAGTTTTTGTCATTGTCGCACTGTTGGCG
TACGGATATATTTTACACAAGATTGCACAACGTAAACTGTCTCTTAATGA
AACTGAATCCTCGCGAACTTCATCTAGCAGTCACAAACGAAggagaaaac
cttttttaaTGGTCCTAGCTTTGATTTTATCTTTCACCATTTTCGTTGTG
GTTCCTGATATCGTCGCCTTGGTGTTCAACcgtcaaaacaaagaaatgtc
aCAGTCTGTGGAACTCTATCTCAGCTTTTCATTTCGTGCTGGTATCATTG
TTGATTTCTTTATTTACGTTTTTGGCTGTCGAGAAGTTCGTTTGATGTTG
AGAAAATGTTTACGACGGGACAGAAATAATAATCGAGACACAGTTTTCGT
GAATGTTTACACTACTAGGACTACAACTCATAAACGAGAAAATAAGATcg
atgtttttttgtttgtaaatAATATTTAACATTGATTACCTTCTGGTATT
Cttatatttttaaatatatatggataaattttgtttcttttatt Coding sequence (CDS) from alignment at scaffold_420:233774..234917 >TCONS_00064687 ID=TCONS_00064687|Name=TCONS_00064687|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_420:233774..234917 (Clytia hemisphaerica)
ATGGATACAAAGCAGCTACTGGTGGTTATTCTGAGTTTATTTTCAACAGT
GTTGCATTCTATTGGATTTGTTTTGCTATGGAGGGCAAAGAAAGTAACAA
ATCAATACAACAAATCACAAACACTCTATCTCTTACATTTGAGCTTCACT
GAAACCTTATATTCAATCAGTGGGTCATTTCGCATTCTAGCAAAAGTCAC
AGACCACCCTAATGCTGAATTATGGGTTTTCATTGGAAGTAGTGGTGTAT
TCATTCAACTAACCATGATCTTAATTGCATTAACTTTCGACAGGTACCTT
GCAGTGCGGTATAACTTGAAATATCTCTTGATCTGGaccacaaaaaaaac
aacaatcgtCATTGTGTCCATTTACTTCATTAATATACTGTTCACCATCC
TTTCAATCAACTTTCTTCATAGCATCCAACAAGCATATGATGTTTTCTCA
CAATTTGCATGGCTTCCTTTAGACGGAGTTTTTGTCATTGTCGCACTGTT
GGCGTACGGATATATTTTACACAAGATTGCACAACGTAAACTGTCTCTTA
ATGAAACTGAATCCTCGCGAACTTCATCTAGCAGTCACAAACGAAggaga
aaaccttttttaaTGGTCCTAGCTTTGATTTTATCTTTCACCATTTTCGT
TGTGGTTCCTGATATCGTCGCCTTGGTGTTCAACcgtcaaaacaaagaaa
tgtcaCAGTCTGTGGAACTCTATCTCAGCTTTTCATTTCGTGCTGGTATC
ATTGTTGATTTCTTTATTTACGTTTTTGGCTGTCGAGAAGTTCGTTTGAT
GTTGAGAAAATGTTTACGACGGGACAGAAATAATAATCGAGACACAGTTT
TCGTGAATGTTTACACTACTAGGACTACAACTCATAAACGAGAAAATAAG
ATcgatgtttttttgtttgtaaatAATATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064687-exon-scaffold_420-1491911889:233774..234917 | TCONS_00064687-exon-scaffold_420-1491911889:233774..234917 | Clytia hemisphaerica | exon |
| TCONS_00064687-exon-scaffold_420-1510915933:233774..234917 | TCONS_00064687-exon-scaffold_420-1510915933:233774..234917 | Clytia hemisphaerica | exon |
| TCONS_00064687-exon-scaffold_420-1575043694:233774..234917 | TCONS_00064687-exon-scaffold_420-1575043694:233774..234917 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:233774..234917 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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