TCONS_00064706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064706
Unique NameTCONS_00064706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064706 ID=TCONS_00064706|Name=TCONS_00064706|organism=Clytia hemisphaerica|type=transcript|length=749bp
ANacaacaacaacaacaacttcaACAAATTCATCACCAGCAACAATTACA
ACAGcAGATTCAACATGTGCAAGCACAGCAACAGCAAATGTCTCAACAAC
AATCGCAACAAATTATTGCAACAACACCTGATAAACATTCTTCAATGAAT
AGCCAGTTGGATACAAGTCAAAGCACAGCTTCAACCAAATCGATGGATGA
AAATGAATCCTCTGACGAAGACATACACCAATGTGGGCGTTGCAAAGTTG
TTTTCCATGATGTCACGGCTTACTTGAAACACAAACAATCTAAAGCTTGT
AAAACCATTAAAAGCAGTTCACCGAACAAACAACAAGCATCACCAACCAA
AACACCTCAACAGCAATACTCAAGCAGTGGAGATACTCAGCAATCACAAG
TCCAACCTATGGGAAACGAacaaataacaacaacaacccAGCAGCAACAG
CAGCAAcagcagcagcagcagcagCAACAGCAgcagcaacaacaacagca
gcagCATCAGCAGTCTCAATCCCAAacagaaaacaaccaaaacattCTAG
AAGCTGCAGCCAAGAATACCATATTCCGTGATTCTTTCATCTCCATTAGA
AACGAGATTCAAGATATTGGTACCGAGAAACGGGGAGTTGAGGAAAATGA
ACCTCAATACACTTCTGAAGACTTATGGAGCAAAGAGAAAACTGGTGATG
ATATTTTGCTTTCCCAGGAAGACATTGTTGACGAAGCTGGTAAAAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_421:149359..151124-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064706 ID=TCONS_00064706|Name=TCONS_00064706|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at scaffold_421:149359..151124- (Clytia hemisphaerica)
ANACAACAACAACAACAACTTCAACAAATTCATCACCAGCAACAATTACA
ACAGGTATAGAGTATACATATTCTGAGGTTAACTTATTTTGCACGATTTT
GCAGATTCTTCAAAGAACTTCCTGTAGTCTTCAAAGTCTGAGCAGAAATG
ACACCTAGGTTTTATCTTAATTCATATTACAGCTAAGATTAACCATCCAC
ACAGAAGTGCCCTATAATTTCAACATAATTCGTGTCAGTATGCCAGAGCA
TATCCAGGCATATCAGTGACAACCAAACTTACTTGATTGAATCTTTGTAT
TATTGCAACTTTCTGTCTTAAGACAGAAACCCGTCTAGTTGAGAGGCATT
TCATTTCTGTCTTCTCAGTAAGATGGTTTTTTTTGTTCAATAATTATCAC
CAAGCCTAATTGTAACACTGGATAATTTTTTTTTTAATTTACAGCAGATT
CAACATGTGCAAGCACAGCAACAGCAAATGTCTCAACAACAATCGCAACA
AATTATTGCAACAACACCTGATAAACATTCTTCAATGAATAGCCAGTTGG
ATACAAGTCAAAGCACAGCTTCAACCAAATCGATGGATGAAAATGAATCC
TCTGGTATGTATGTTTACGCCACTTTACCAGGGAAGCTATNGATACAAGT
CAAAGCACAGCTTCAACCAAATCGATGGATGAAAATGAATCCTCTGGTAT
GTATGTTTACGCCACTTTACCAGGGAAGCTATTAGTCCCATTGTGAAATC
CAACCTTAGGCACCCCTCCTTTGGCTCATCACTAAAACGCTTGGTAAGGG
ATCAGAAGGTTCATTACAGCATTGATTCTGGTGAGGGTTTAAGCATGTTT
TGAGAGAATATCTCTATCGAAATTATTGAGATAATGAACTACATGCTTTT
TATAAGAATAACTTCTAAAATAATATGAGGGTGAGATTTAGGAGTTAGAA
CGATGTGCCTTGATTGGAACAATTGAAAAATAAGAATAATGCCACGCTCA
GACAAAAAACACTATTCTTATAAAAAAGCGTGTATTTGGTAAGGCTCAAA
CTATCAATCCGAAAAGTAAGGCAACTGTAGCCTAAACAGAAAGGAAATAT
CTCTTGCTTTGAATTTTTTAACCATATAAAACTTGTCCTGACCTATCGGC
AAATTTTCGCACAGTTCCGTCCTTTTTGAGGTTGGTCTCACTGCTAATTT
TTTATTCATTCAATCATTCATTACATTTCAGACGAAGACATACACCAATG
TGGGCGTTGCAAAGTTGTTTTCCATGATGTCACGGCTTACTTGAAACACA
AACAATCTAAAGCTTGTAAAACCATTAAAAGCAGTTCACCGAACAAACAA
CAAGCATCACCAACCAAAACACCTCAACAGCAATACTCAAGCAGTGGAGA
TACTCAGCAATCACAAGTCCAACCTATGGGAAACGAACAAATAACAACAA
CAACCCAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAG
CAGCAACAACAACAGCAGCAGCATCAGCAGTCTCAATCCCAAACAGAAAA
CAACCAAAACATTCTAGAAGCTGCAGCCAAGAATACCATATTCCGTGATT
CTTTCATCTCCATTAGAAACGAGATTCAAGATATTGGTACCGAGAAACGG
GGAGTTGAGGAAAATGAACCTCAATACACTTCTGAAGACTTATGGAGCAA
AGAGAAAACTGGTGATGATATTTTGCTTTCCCAGGAAGACATTGTTGACG
AAGCTGGTAAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040588XLOC_040588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064706-exon-scaffold_421-1575043694:151071..151124TCONS_00064706-exon-scaffold_421-1575043694:151071..151124Clytia hemisphaericaexon
TCONS_00064706-exon-scaffold_421-1575043694:150521..150680TCONS_00064706-exon-scaffold_421-1575043694:150521..150680Clytia hemisphaericaexon
TCONS_00064706-exon-scaffold_421-1575043694:149359..149893TCONS_00064706-exon-scaffold_421-1575043694:149359..149893Clytia hemisphaericaexon
TCONS_00064706-exon-scaffold_421-1510915933:151071..151124TCONS_00064706-exon-scaffold_421-1510915933:151071..151124Clytia hemisphaericaexon
TCONS_00064706-exon-scaffold_421-1510915933:150521..150680TCONS_00064706-exon-scaffold_421-1510915933:150521..150680Clytia hemisphaericaexon
TCONS_00064706-exon-scaffold_421-1510915933:149359..149893TCONS_00064706-exon-scaffold_421-1510915933:149359..149893Clytia hemisphaericaexon
TCONS_00064706-exon-scaffold_421-1491911889:151071..151124TCONS_00064706-exon-scaffold_421-1491911889:151071..151124Clytia hemisphaericaexon
TCONS_00064706-exon-scaffold_421-1491911889:150521..150680TCONS_00064706-exon-scaffold_421-1491911889:150521..150680Clytia hemisphaericaexon
TCONS_00064706-exon-scaffold_421-1491911889:149359..149893TCONS_00064706-exon-scaffold_421-1491911889:149359..149893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:149359..151124 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4.85414e-05	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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