TCONS_00064711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064711
Unique NameTCONS_00064711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064711 ID=TCONS_00064711|Name=TCONS_00064711|organism=Clytia hemisphaerica|type=transcript|length=502bp
ATAGCTCGCCGGGGCCTATGTCAACGCTGACAGTAGGGGATGGGGGACGA
CCTCTGGTGTCTCATAATTCAATTAGGGGATTTTCGGAAGAGAAAATAAA
TTCTTAAGAAAGTTTGACTAacgaaaaaatcgaaaaaagttCACTTGATG
GCTCTATTAAAATATTCCAATTTTATGGGAAGGTTTCCAATTCTCGCTCG
AATATTTCAACGGGAATCAGGGAATTTAGCTTCCCTATGGGATTTAAtaa
actttttgctttttttggtTTTCGAGTCGAAGTTCGACaatataatttaa
aaattcaacacCGTCTAAATTGAAAGTGCTTTCAATTTTCACTGGATTTA
CTTATTTTTTATCTGCAAACTTAAAATACAGTACTTTATTTATTTTACAA
GTGGAAGATCTATTAGTTATTACTTTGtttcttagtatttttaatcataa
tttttttaagtcagaaatAACGACGtgcaaattgaaaataaatactattc
TG
Run BLAST on NCBI

transcript from alignment at scaffold_421:142166..142667

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064711 ID=TCONS_00064711|Name=TCONS_00064711|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at scaffold_421:142166..142667 (Clytia hemisphaerica)
CAgaatagtatttattttcaatttgcaCGTCGTTatttctgacttaaaaa
aattatgattaaaaatactaagaaaCAAAGTAATAACTAATAGATCTTCC
ACTTGTAAAATAAATAAAGTACTGTATTTTAAGTTTGCAGATAAAAAATA
AGTAAATCCAGTGAAAATTGAAAGCACTTTCAATTTAGACGgtgttgaat
ttttaaattatattGTCGAACTTCGACTCGAAAaccaaaaaaagcaaaaa
gtttaTTAAATCCCATAGGGAAGCTAAATTCCCTGATTCCCGTTGAAATA
TTCGAGCGAGAATTGGAAACCTTCCCATAAAATTGGAATATTTTAATAGA
GCCATCAAGTGaacttttttcgattttttcgtTAGTCAAACTTTCTTAAG
AATTTATTTTCTCTTCCGAAAATCCCCTAATTGAATTATGAGACACCAGA
GGTCGTCCCCCATCCCCTACTGTCAGCGTTGACATAGGCCCCGGCGAGCT
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040592XLOC_040592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064711-exon-scaffold_421-1491911889:142166..142667TCONS_00064711-exon-scaffold_421-1491911889:142166..142667Clytia hemisphaericaexon
TCONS_00064711-exon-scaffold_421-1510915933:142166..142667TCONS_00064711-exon-scaffold_421-1510915933:142166..142667Clytia hemisphaericaexon
TCONS_00064711-exon-scaffold_421-1575043694:142166..142667TCONS_00064711-exon-scaffold_421-1575043694:142166..142667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:142166..142667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.363253	0.236153	0.137098	0	0.326578	0.516133	0.155673	1.02018	0.612213	0.50555	0	0.161283	0.322118	0.167261	0.343779	0	0.363591	0.186334	0.514862	0.269383	1.05364	1.02786	0.555332	0.504878	0.130003	0.116025	0.664123	0.531578	0.94076	1.09541
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top