TCONS_00064722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064722
Unique NameTCONS_00064722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064722 ID=TCONS_00064722|Name=TCONS_00064722|organism=Clytia hemisphaerica|type=transcript|length=1525bp
GTTCTTTTCACACAGTTGTTTTCTATAATCATTGATTTGTTACTACTTTT
TCACACTATTTTTTAGtgtaaatttacttttttggttgatattttcaaga
tttcttggGACGTCGAAGACTTGGtgaaaaaagatgATGACGGGTCAAAT
ATTGTGTAGCTGTTTGGTGCTTAATCTAATAGTGCTTATATCATGTCACC
CAGCCAAAGCACCAAAAGAGCGTGATAGACGTCAACTGATGATGATGCAA
GACCCTGGGTTGGTACAAGAAGAGGTCGCTTATATGAAAGAATGGGCTGA
CCAACCTGTTGAACTTGGTTTCTTTGTCAACTCTCGCCCAGCTGGTGATT
CTGATGAACCCGCTCAATCAGCTGCACGCCGTAACCTGATCACTGATAAA
CCGTCAGCACATGACGAAGGTAGCGGCGCCGGTTCAGAATTCCGTCGTGA
CGAGATCTTAAAGAAACCGACGGCACCTTTGAATAATGACGAAATGAATA
CACTAACTGGTGAAGTTAGGagcaaaatcgaaaaatccaaacCCATCGAA
CAATCAGTAGAGGACCCTGGAGATAGAAGAAAGgCACGCTCTAGTGTCAC
GTGTCAGGGCCAAAAAGAATGGATTCAATGTGACGGCCCGTACGAACTCA
TTAAAATACAAGACGCATTTTGGGGCCGTGATGACACGCAAACTTGTACC
AAAAGTGACGTAGCACGTGGTTTCAAGACCGGTCAAAAGTGTGTTCAAGA
AAGTGATAACGTGATGAAGAAAGTTCGTGAAGCGTGCGATAATGAAAACG
TGTGCGAAGTCGTCGCTTCTAACATTTATTTCGATCAAACAGACTGTCCA
GATGTGTATAAATTTTTAAGACTGAAATGGCAATGTGCTCCCAGTGAATC
TAGGATCAAGGAAACAGCATAGATTACATAAATTACATAATTTTATCATT
CACCAATGTTAGACGTGTACATTCTTCCCTGCAGAGAGAGAGTCGGCTCA
ATTTTGACGATGCGATGGACGAGTAAACAACTTGGAATGAAATGTTTTTG
TGCCCCCCACTGCACTTTTAGTTTTATGTATACAATTTGACGATTTACCA
AATGGTATCAAAACGTACAATTGAATGTTGGTTAAGTTAGACGTTCTTGG
ATCTTCTTGTGAAACGAATCCTTAACAATGTGACGAAGACGATGAAATAG
ACAAATTTAATTATAAGTAACTTTACTCATGATAAGTAccacattgaaaa
ttttttcctgttcCCTAAGTTTTTGTACGTTGACAAAAAAcctcagaaaa
atgaaaaaccactTAAAGACAATACCCCTTGCTTGCAATACGCCTGTGAC
ACTTGTCAGAAGAATATATTTGGGATTCACTCAAAATAGAACCCAAGATT
TTGAGCGAATAAATAACCATTTTTAAGTGATTGTAAAAACAGTAACGAGG
CCTTCAAAATCAACCTGTCTTATTCTCATTACTGTTTTATACCTTTATGA
CTTTCAAACGAttaatcaattttat
Run BLAST on NCBI

transcript from alignment at scaffold_423:101424..108383+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064722 ID=TCONS_00064722|Name=TCONS_00064722|organism=Clytia hemisphaerica|type=transcript|length=6960bp|location=Sequence derived from alignment at scaffold_423:101424..108383+ (Clytia hemisphaerica)
GTTCTTTTCACACAGTTGTTTTCTATAATCATTGATTTGTTACTACTTTT
TCACACTATTTTTTAGtgtaaatttacttttttggttgatattttcaaga
tttcttggGACGTCGAAGACTTGGtgaaaaaaggtaattttttgtttgtt
ttttatttaacaagatggggaaatatttttgggagAAAAGAAGATTACTG
TACTGTTCAGCGTTGTGAGCCTTCTTTTCTGTGAAAGCGTATTTTTAAAG
GGGGAGTAGGCGATGATTTTAAGCAAGGTTGCTTCATATATTGAAAGGGT
TTTCAACGCGCCTGCTAAGAAATCGTGTCAATGCGCTTATTTCTAGGGGT
TACATACCAACCATGAAACTTAAAAATGACGAAAAAGAACTAGATTCCGT
AAGATGTTGAAATTGGCGTGTCAATAACGTTGTtgtttgtttttcgaaat
taaaCGTGAGAAAGAGGAACCCTTTGCAGTCGCACTTTGTGCTTCAGGGG
CTTCATTAAAACATAACCATTAGAACAGTTCGATATTATTTTGATCTTTC
TGAGAGGAAGGAATCTGGGTAGGATGAAGTTGAAAAGTGACAAGAATATT
TTCACCTGAAATTACAATAATCTGATTCTCAACGGAAGACTCGggtcaaa
aatgttaaaaactggCAATTTTACTTCTCGTATTTCttgtcaaaaaatgt
tatttttcaaatgtaaatctattcttgtttgaaatgtttcaaGTTTCAAA
CTGTTTAGCTTATTAAAGTGCgtttaaaaaagttaataaaGCTCACTCAC
CCTTATAAACAGTAATTTGAAAACAGCTTTAACTGGAATATAACCCCCTG
TTTTAGATTTAATATACGtaggttttcttcttcaatttctacATTTTCAG
GGGGTTTGGTTTTTTAAACCACCAAAACAGAACAGTGTTTAGCCATTAAA
CCGTAACGTTATTCTTTCGAAACTTTTTCCCAaactttgttcaatttttt
gattttcttgaatttttttttgaaattgtgttCTGGTTGTATTGGTTAtt
ttggttgaaaaagtttaaaaaaacaatttgttttgttttttttttaaact
tttaataatTTTGCTGGAACTCAACGCTCATTTTAAGAGAAGGTATGAGG
AATTATtccattcttttttgaaaataaacggagaaactttttttccaaat
aattaaagtttcttgatttttcaaggtaTGATACCGCTCTGCCACTCTGT
CAATTATAATATTTAGTATTCCGTTGAATTTAAAGGTAAGACGTCTGAGA
GTAGGGGATTAATAATAATGCCAGAAATGTTTTATCCGTATTCCTTCCAT
GTATTGAAATCAATAATATCTTCCATCGTTCTTTTTAAATCAGAAATAGT
TTGCAAGGAGGcttgacgtccagggtggtctggaaaataaaaaatccagg
ggtctggtctggtttttcgagtgtaaaaatccagggtgttCAGTTAAAac
agggttcagacagaccctggaaaacctggaaatatgataaattttcagaa
aaatcagggaaactcagggaaactcagggaaacccagggaaaaaattttt
tttcccagtctgctcagggaaactgagggaattttatttgttgaagaatg
aatggaaaaaacagatttaaaagtttttttagttttaaagtgtTTATTCA
TATGCAGTATTTGTAGCTTTAATTTTTACCTTAGGTTTACCATTTGATTT
GTGTGCCTTTTGTTTAAAGATACATCTCTTTCGACTATGcttagttttta
tggtttgcttgatactcagggaaaaaatagggaaaaaatagctaaaatga
ggaatttctcagggaaaaaacctttgaaaattgattaaaattcagggaaa
ctcagggaattttattttcgaaggtctgtctgaaccctgtaAAATTAAGT
GCAAAActagggtggtcagtaaaacggaGTCGAAAATCTAGGGTGGTCCA
AAAATACGAAGAAAAAATCATAGGGGGGtcttgaaaaattagaaaaatgc
aGGGGATCGAATGGAAGATTAAAAATAATACCAAAACTGTTTTATCCATA
CTCTAAGGTCCAGAACAACCTGGTTTTAGTCTATAATCACCCTTTTTTGG
GTGGTTACGAGGTACAATTTCCCGACAATTTCCAAACCCTTGGCAATTAG
GTCCTCCCTcccgtttattatattttgtaaaatttcggaCATCCTTACTA
TCAGTAGCGTGGCGGGTCGACTAAAACTTAGGAGGCAATTTCGAAAGTTG
GGATATTGGCGCTCCTTTTTAATTAACCACGAAAAAGTTTTGGGTACTTT
TCTCATTTTGGCCTAAAACAGCCAATTCTAAGTTGTAATATAAAGCAAAA
GGGCGTAAAAATGAGTAATCAAAGGTGCCTTTTTTCATCCCTTTGGGGGG
TTGCAGTTACCCCGTTTAGAGCAGTTTAGCTTTTTAGAGCAGTTTAGACC
GGttaattacaattttttcatgcCTTGTACGGCCCAATTTCGCCGTTTGC
CGGCTAAATAAGGTCCctgaataaataaatgaaatgcCTTAATCCTGGCT
TTGTGTTTTATATCTTGCTTAAGTTGGATAACTGACAAGGGAACATCTAT
CAATGTTGTTGAAAATACAATGTATTGCAGTGCTGGGTGTATATTTCTAA
AGGATAATCCTTTCTTATCTTTTTCCCGAGGAAAACAATCAAATTTTTCT
GTTGTCTAACTTTCCCAAGTGGAGAtaatgaagatttttcaaaaaatgga
tttttataACGTTCTTCAATTGATATTTGATCGTTTGTTTTGTTAAAATA
GAACGGCCGAAGTTAACTTAGCCAAAAATTAATTCGATGGAGATAAAATA
ACTGTTCATTGGATAACTGCGAGTTTTTGTGAAAGTTGGATTAACAGATC
CATTTACTTCCAAGTCCAAAGGGCTAGACTCAAGACTCCTGGATGATAAA
TAAAGCCACTTTTTCCCCATttagaacgcccgcgcgtggtttttacacaa
acgccggattgaaagtaaaatctatcgctagatttaaaaaaatgcaatcc
tcaaaaacaaaggaaccgctagatacaatccgtcgtcatgattgcggtgc
gttctagatgggaaataagcgacctcactttttcttgcctgcgaaaggtt
agagattgggcttttccagaaaaaaaaccgtacaccccctattgaggagc
tccaaccttttgtgaattacccccttggaattccaggcaattttaggatc
atacccctctggaattccgaatttttacagattttcattcattcattctt
acccccatggaattccacttatttttgacggatttttgtctactgctatg
gaattccactgcatttcaaaccatacccccttggaatggaaatggactcc
tcaacagggggtgcacggtttttttctggaaaagcccattcttctctagc
cctttgggcttcaAACTCGAGCAGATCCAACGAAGGCTGTCAACATCCCC
TCTAATTGATATGTTTTGTGATGTAATGTGATGTGTTTTGAGGTGGGAGT
CTTTTAAATTATCAGAATctgaaagaggaaaaatataCCACAAAAAACCT
GCTTAACAAATTGTTTTCGGGTCTGAATTGCCTCCCTCATGACAATAACT
CTTTTCAGGAATGCGATCAAACTAGACCATGGAAAATTATCTTTTCGAAT
AACCAGGGGTTTCTTCtaataatttcttcttttattttttagatgATGAC
GGGTCAAATATTGTGTAGCTGTTTGGTGCTTAATCTAATAGTGCTTATAG
TAAGTGTTTTCTTTATCTTCACGTCCTGAAGGTTGGAAGTCGCTTGGGTA
AATGAAGGGGTACGGGAATGTACACTCAAAAGGCTAAATTCCAGGAAAAA
GCTCCGATAAGGGTCTTAAAATTCCTAATTTCTCTGATTTGTTCTCTATT
TTGGCCCttattttccaatattttttatttttccatattttctCAAAGAT
TGTATACAAGTACTATTTAACttcaatcaaagtcataatatttgagaaaa
aagagaaattcccacgaaatcttacaaccacaaacgatttggaagcgctc
taaagtaggttggaagggtagagttttaacatgagacttaagacttgggA
GGACCTTAGTatttgaggatccaaaagtccaagAATGATCTAACAGGGCT
CGGAATATAGCCTaaaagtctataaacccctcccgaattgaaatattaga
ataaatttatcaattagctcAAAAGTGACGttctcgcccgagctttaaat
tgctaaaaacgagaaattaaccaaaattctcaatatattttgaccgagat
tgttGGCAATCTACTGATAGTGCTCGTGTGAATTGAAATTAATGATTATT
TATAAATCCCAATTAAGTACGAATTCCTTTTTAATGAATTGACCGAAATT
TAATCTTGCTTTAGTCATGTCACCCAGCCAAAGCACCAAAAGAGCGTGAT
AGACGTCAACTGATGATGATGCAAGACCCTGGGTTGGTACAAGAAGAGGT
CGCTTATATGAAAGAATGGGCTGACCAACCTGTTGAACTTGGTTTCTTTG
TCAACTCTCGCCCAGCTGGTGATTCTGATGGTAAGGTTTTACTCTGTGTC
CTTTTTTATTTGTTAACGtgattatcagatgatttttgatatttggctta
gagataTGGTCCAGAGAGACACCTCTAAATCTTTTGAtccaatttttttc
aaccaatttcaaattcaacttaaagactgtgtaaagactcaattttagag
atttcaaagtctcagcttttgaaaaaaattaggtCAAAAGATTTAGAGGT
GTCTCTCTGGACCATAAAAGGTATCTCTAAACCAAATgtaaaaaatcatc
tgataattCCGTTAATGTTATGTTTACGCCATGTACCAGCTTGTATTGGC
AAAGCTTGACTCTAATTACATGTTGCTGAGTGATTTAGAAATAACTTTTT
CTCGATAACTCAGTAACAAGAGTTCCTTTGCATTTTTCTTATCAGCAAGG
GGAGGGGTACACTTTACAGCAAAACGGTGGTCTTTTTGAATGTCAGTGTT
GTATACCTATTCTAATGATTTCAACTCGAGATCGTGGTCGAAGAAACTCG
TTTTTTATGCAAACCGTTTCTTTCAGTCAGTGTTCTCAGGCTCTTAGTAA
ATTGATCTAAGAAAGCTCTTACTCAGCCCTGAAAGTATAGCTCAAACtta
aatttgtcatttttcggTCGGATAAAGTTCACCAAATCTTGCCCAGGTAt
taatgaatgaatgttcaTTCGATAACTCTATTTTAGAACCCGCTCAATCA
GCTGCACGCCGTAACCTGATCACTGATAAACCGTCAGCACATGACGAAGG
TAGCGGCGCCGGTTCAGAATTCCGTCGTGACGAGATCTTAAAGAAACCGA
CGGCACCTTTGAATAATGACGAAATGAATACACTAACTGGTGAAGTTAGG
agcaaaatcgaaaaatccaaacCCATCGAACAATCAGTAGAGGACCCTGG
AGATAGAAGAAAGGTATTAATCAAACTCTTATTTTTTGTTGGAACTAATT
AAATTATAGATATTTATTGGTAGTACCTACTTAAGATTATAACACAGAAT
CTTCACTACAGTCGACTTTcgttaattcgaactcgaacggggaatcttaa
TTTTTCGTCGAATTACAAagtgattcgaattatagaaagaatcgaataat
agaggtttgAATGAGCAAGAGTCTATTGTATGTTCTTTTTACACGAGATG
TACGCTCacaaaacattttctctttttgaagtagctcaagtaGAAGAAAA
GAGTTGAAGGTTTAAATATCCCCTGAATCGTCAAAACACACTATTAAGAT
TAAACCAGCAAGTTAGCTTCAGTATATCTTTTTTGGAATGCCGTGAAtta
taaatttgtttattttaggCACGCTCTAGTGTCACGTGTCAGGGCCAAAA
AGAATGGATTCAATGTGACGGCCCGTACGAACTCATTAAAATACAAGACG
CATTTTGGGGCCGTGATGACACGCAAACTTGTACCAAAAGTGACGTAGCA
CGTGGTTTCAAGACCGGTCAAAAGTGTGTTCAAGAAAGTGATAACGTGAT
GAAGAAAGTTCGTGAAGCGTGCGATAATGAAAACGTGTGCGAAGTCGTCG
CTTCTAACATTTATTTCGATCAAACAGACTGTCCAGATGTGTATAAATTT
TTAAGACTGAAATGGCAATGTGCTCCCAGTGAATCTAGGATCAAGGAAAC
AGCATAGATTACATAAATTACATAATTTTATCATTCACCAATGTTAGACG
TGTACATTCTTCCCTGCAGAGAGAGAGTCGGCTCAATTTTGACGATGCGA
TGGACGAGTAAACAACTTGGAATGAAATGTTTTTGTGCCCCCCACTGCAC
TTTTAGTTTTATGTATACAATTTGACGATTTACCAAATGGTATCAAAACG
TACAATTGAATGTTGGTTAAGTTAGACGTTCTTGGATCTTCTTGTGAAAC
GAATCCTTAACAATGTGACGAAGACGATGAAATAGACAAATTTAATTATA
AGTAACTTTACTCATGATAAGTAccacattgaaaattttttcctgttcCC
TAAGTTTTTGTACGTTGACAAAAAAcctcagaaaaatgaaaaaccactTA
AAGACAATACCCCTTGCTTGCAATACGCCTGTGACACTTGTCAGAAGAAT
ATATTTGGGATTCACTCAAAATAGAACCCAAGATTTTGAGCGAATAAATA
ACCATTTTTAAGTGATTGTAAAAACAGTAACGAGGCCTTCAAAATCAACC
TGTCTTATTCTCATTACTGTTTTATACCTTTATGACTTTCAAACGAttaa
tcaattttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040597XLOC_040597Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064722-exon-scaffold_423-1491911889:101424..101556TCONS_00064722-exon-scaffold_423-1491911889:101424..101556Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1510915933:101424..101556TCONS_00064722-exon-scaffold_423-1510915933:101424..101556Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1575043694:101424..101556TCONS_00064722-exon-scaffold_423-1575043694:101424..101556Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1491911889:105216..105272TCONS_00064722-exon-scaffold_423-1491911889:105216..105272Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1510915933:105216..105272TCONS_00064722-exon-scaffold_423-1510915933:105216..105272Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1575043694:105216..105272TCONS_00064722-exon-scaffold_423-1575043694:105216..105272Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1491911889:105938..106103TCONS_00064722-exon-scaffold_423-1491911889:105938..106103Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1510915933:105938..106103TCONS_00064722-exon-scaffold_423-1510915933:105938..106103Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1575043694:105938..106103TCONS_00064722-exon-scaffold_423-1575043694:105938..106103Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1491911889:106810..107036TCONS_00064722-exon-scaffold_423-1491911889:106810..107036Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1510915933:106810..107036TCONS_00064722-exon-scaffold_423-1510915933:106810..107036Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1575043694:106810..107036TCONS_00064722-exon-scaffold_423-1575043694:106810..107036Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1491911889:107442..108383TCONS_00064722-exon-scaffold_423-1491911889:107442..108383Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1510915933:107442..108383TCONS_00064722-exon-scaffold_423-1510915933:107442..108383Clytia hemisphaericaexon
TCONS_00064722-exon-scaffold_423-1575043694:107442..108383TCONS_00064722-exon-scaffold_423-1575043694:107442..108383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:101424..108383 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.119452	0.181777	0	18.8452	22.1412	7.06123	5.22358	11.1477	10.8758	26.8696	24.4346	17.2658	36.9159	22.8671	18.4552	0	0	10.752	9.89479	8.01856	5.59411	9.66163	19.4537	1.8707	0.633139	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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