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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064722 ID=TCONS_00064722|Name=TCONS_00064722|organism=Clytia hemisphaerica|type=transcript|length=1525bp
GTTCTTTTCACACAGTTGTTTTCTATAATCATTGATTTGTTACTACTTTT
TCACACTATTTTTTAGtgtaaatttacttttttggttgatattttcaaga
tttcttggGACGTCGAAGACTTGGtgaaaaaagatgATGACGGGTCAAAT
ATTGTGTAGCTGTTTGGTGCTTAATCTAATAGTGCTTATATCATGTCACC
CAGCCAAAGCACCAAAAGAGCGTGATAGACGTCAACTGATGATGATGCAA
GACCCTGGGTTGGTACAAGAAGAGGTCGCTTATATGAAAGAATGGGCTGA
CCAACCTGTTGAACTTGGTTTCTTTGTCAACTCTCGCCCAGCTGGTGATT
CTGATGAACCCGCTCAATCAGCTGCACGCCGTAACCTGATCACTGATAAA
CCGTCAGCACATGACGAAGGTAGCGGCGCCGGTTCAGAATTCCGTCGTGA
CGAGATCTTAAAGAAACCGACGGCACCTTTGAATAATGACGAAATGAATA
CACTAACTGGTGAAGTTAGGagcaaaatcgaaaaatccaaacCCATCGAA
CAATCAGTAGAGGACCCTGGAGATAGAAGAAAGgCACGCTCTAGTGTCAC
GTGTCAGGGCCAAAAAGAATGGATTCAATGTGACGGCCCGTACGAACTCA
TTAAAATACAAGACGCATTTTGGGGCCGTGATGACACGCAAACTTGTACC
AAAAGTGACGTAGCACGTGGTTTCAAGACCGGTCAAAAGTGTGTTCAAGA
AAGTGATAACGTGATGAAGAAAGTTCGTGAAGCGTGCGATAATGAAAACG
TGTGCGAAGTCGTCGCTTCTAACATTTATTTCGATCAAACAGACTGTCCA
GATGTGTATAAATTTTTAAGACTGAAATGGCAATGTGCTCCCAGTGAATC
TAGGATCAAGGAAACAGCATAGATTACATAAATTACATAATTTTATCATT
CACCAATGTTAGACGTGTACATTCTTCCCTGCAGAGAGAGAGTCGGCTCA
ATTTTGACGATGCGATGGACGAGTAAACAACTTGGAATGAAATGTTTTTG
TGCCCCCCACTGCACTTTTAGTTTTATGTATACAATTTGACGATTTACCA
AATGGTATCAAAACGTACAATTGAATGTTGGTTAAGTTAGACGTTCTTGG
ATCTTCTTGTGAAACGAATCCTTAACAATGTGACGAAGACGATGAAATAG
ACAAATTTAATTATAAGTAACTTTACTCATGATAAGTAccacattgaaaa
ttttttcctgttcCCTAAGTTTTTGTACGTTGACAAAAAAcctcagaaaa
atgaaaaaccactTAAAGACAATACCCCTTGCTTGCAATACGCCTGTGAC
ACTTGTCAGAAGAATATATTTGGGATTCACTCAAAATAGAACCCAAGATT
TTGAGCGAATAAATAACCATTTTTAAGTGATTGTAAAAACAGTAACGAGG
CCTTCAAAATCAACCTGTCTTATTCTCATTACTGTTTTATACCTTTATGA
CTTTCAAACGAttaatcaattttat Run BLAST on NCBI transcript from alignment at scaffold_423:101424..108383+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064722 ID=TCONS_00064722|Name=TCONS_00064722|organism=Clytia hemisphaerica|type=transcript|length=6960bp|location=Sequence derived from alignment at scaffold_423:101424..108383+ (Clytia hemisphaerica)
GTTCTTTTCACACAGTTGTTTTCTATAATCATTGATTTGTTACTACTTTT
TCACACTATTTTTTAGtgtaaatttacttttttggttgatattttcaaga
tttcttggGACGTCGAAGACTTGGtgaaaaaaggtaattttttgtttgtt
ttttatttaacaagatggggaaatatttttgggagAAAAGAAGATTACTG
TACTGTTCAGCGTTGTGAGCCTTCTTTTCTGTGAAAGCGTATTTTTAAAG
GGGGAGTAGGCGATGATTTTAAGCAAGGTTGCTTCATATATTGAAAGGGT
TTTCAACGCGCCTGCTAAGAAATCGTGTCAATGCGCTTATTTCTAGGGGT
TACATACCAACCATGAAACTTAAAAATGACGAAAAAGAACTAGATTCCGT
AAGATGTTGAAATTGGCGTGTCAATAACGTTGTtgtttgtttttcgaaat
taaaCGTGAGAAAGAGGAACCCTTTGCAGTCGCACTTTGTGCTTCAGGGG
CTTCATTAAAACATAACCATTAGAACAGTTCGATATTATTTTGATCTTTC
TGAGAGGAAGGAATCTGGGTAGGATGAAGTTGAAAAGTGACAAGAATATT
TTCACCTGAAATTACAATAATCTGATTCTCAACGGAAGACTCGggtcaaa
aatgttaaaaactggCAATTTTACTTCTCGTATTTCttgtcaaaaaatgt
tatttttcaaatgtaaatctattcttgtttgaaatgtttcaaGTTTCAAA
CTGTTTAGCTTATTAAAGTGCgtttaaaaaagttaataaaGCTCACTCAC
CCTTATAAACAGTAATTTGAAAACAGCTTTAACTGGAATATAACCCCCTG
TTTTAGATTTAATATACGtaggttttcttcttcaatttctacATTTTCAG
GGGGTTTGGTTTTTTAAACCACCAAAACAGAACAGTGTTTAGCCATTAAA
CCGTAACGTTATTCTTTCGAAACTTTTTCCCAaactttgttcaatttttt
gattttcttgaatttttttttgaaattgtgttCTGGTTGTATTGGTTAtt
ttggttgaaaaagtttaaaaaaacaatttgttttgttttttttttaaact
tttaataatTTTGCTGGAACTCAACGCTCATTTTAAGAGAAGGTATGAGG
AATTATtccattcttttttgaaaataaacggagaaactttttttccaaat
aattaaagtttcttgatttttcaaggtaTGATACCGCTCTGCCACTCTGT
CAATTATAATATTTAGTATTCCGTTGAATTTAAAGGTAAGACGTCTGAGA
GTAGGGGATTAATAATAATGCCAGAAATGTTTTATCCGTATTCCTTCCAT
GTATTGAAATCAATAATATCTTCCATCGTTCTTTTTAAATCAGAAATAGT
TTGCAAGGAGGcttgacgtccagggtggtctggaaaataaaaaatccagg
ggtctggtctggtttttcgagtgtaaaaatccagggtgttCAGTTAAAac
agggttcagacagaccctggaaaacctggaaatatgataaattttcagaa
aaatcagggaaactcagggaaactcagggaaacccagggaaaaaattttt
tttcccagtctgctcagggaaactgagggaattttatttgttgaagaatg
aatggaaaaaacagatttaaaagtttttttagttttaaagtgtTTATTCA
TATGCAGTATTTGTAGCTTTAATTTTTACCTTAGGTTTACCATTTGATTT
GTGTGCCTTTTGTTTAAAGATACATCTCTTTCGACTATGcttagttttta
tggtttgcttgatactcagggaaaaaatagggaaaaaatagctaaaatga
ggaatttctcagggaaaaaacctttgaaaattgattaaaattcagggaaa
ctcagggaattttattttcgaaggtctgtctgaaccctgtaAAATTAAGT
GCAAAActagggtggtcagtaaaacggaGTCGAAAATCTAGGGTGGTCCA
AAAATACGAAGAAAAAATCATAGGGGGGtcttgaaaaattagaaaaatgc
aGGGGATCGAATGGAAGATTAAAAATAATACCAAAACTGTTTTATCCATA
CTCTAAGGTCCAGAACAACCTGGTTTTAGTCTATAATCACCCTTTTTTGG
GTGGTTACGAGGTACAATTTCCCGACAATTTCCAAACCCTTGGCAATTAG
GTCCTCCCTcccgtttattatattttgtaaaatttcggaCATCCTTACTA
TCAGTAGCGTGGCGGGTCGACTAAAACTTAGGAGGCAATTTCGAAAGTTG
GGATATTGGCGCTCCTTTTTAATTAACCACGAAAAAGTTTTGGGTACTTT
TCTCATTTTGGCCTAAAACAGCCAATTCTAAGTTGTAATATAAAGCAAAA
GGGCGTAAAAATGAGTAATCAAAGGTGCCTTTTTTCATCCCTTTGGGGGG
TTGCAGTTACCCCGTTTAGAGCAGTTTAGCTTTTTAGAGCAGTTTAGACC
GGttaattacaattttttcatgcCTTGTACGGCCCAATTTCGCCGTTTGC
CGGCTAAATAAGGTCCctgaataaataaatgaaatgcCTTAATCCTGGCT
TTGTGTTTTATATCTTGCTTAAGTTGGATAACTGACAAGGGAACATCTAT
CAATGTTGTTGAAAATACAATGTATTGCAGTGCTGGGTGTATATTTCTAA
AGGATAATCCTTTCTTATCTTTTTCCCGAGGAAAACAATCAAATTTTTCT
GTTGTCTAACTTTCCCAAGTGGAGAtaatgaagatttttcaaaaaatgga
tttttataACGTTCTTCAATTGATATTTGATCGTTTGTTTTGTTAAAATA
GAACGGCCGAAGTTAACTTAGCCAAAAATTAATTCGATGGAGATAAAATA
ACTGTTCATTGGATAACTGCGAGTTTTTGTGAAAGTTGGATTAACAGATC
CATTTACTTCCAAGTCCAAAGGGCTAGACTCAAGACTCCTGGATGATAAA
TAAAGCCACTTTTTCCCCATttagaacgcccgcgcgtggtttttacacaa
acgccggattgaaagtaaaatctatcgctagatttaaaaaaatgcaatcc
tcaaaaacaaaggaaccgctagatacaatccgtcgtcatgattgcggtgc
gttctagatgggaaataagcgacctcactttttcttgcctgcgaaaggtt
agagattgggcttttccagaaaaaaaaccgtacaccccctattgaggagc
tccaaccttttgtgaattacccccttggaattccaggcaattttaggatc
atacccctctggaattccgaatttttacagattttcattcattcattctt
acccccatggaattccacttatttttgacggatttttgtctactgctatg
gaattccactgcatttcaaaccatacccccttggaatggaaatggactcc
tcaacagggggtgcacggtttttttctggaaaagcccattcttctctagc
cctttgggcttcaAACTCGAGCAGATCCAACGAAGGCTGTCAACATCCCC
TCTAATTGATATGTTTTGTGATGTAATGTGATGTGTTTTGAGGTGGGAGT
CTTTTAAATTATCAGAATctgaaagaggaaaaatataCCACAAAAAACCT
GCTTAACAAATTGTTTTCGGGTCTGAATTGCCTCCCTCATGACAATAACT
CTTTTCAGGAATGCGATCAAACTAGACCATGGAAAATTATCTTTTCGAAT
AACCAGGGGTTTCTTCtaataatttcttcttttattttttagatgATGAC
GGGTCAAATATTGTGTAGCTGTTTGGTGCTTAATCTAATAGTGCTTATAG
TAAGTGTTTTCTTTATCTTCACGTCCTGAAGGTTGGAAGTCGCTTGGGTA
AATGAAGGGGTACGGGAATGTACACTCAAAAGGCTAAATTCCAGGAAAAA
GCTCCGATAAGGGTCTTAAAATTCCTAATTTCTCTGATTTGTTCTCTATT
TTGGCCCttattttccaatattttttatttttccatattttctCAAAGAT
TGTATACAAGTACTATTTAACttcaatcaaagtcataatatttgagaaaa
aagagaaattcccacgaaatcttacaaccacaaacgatttggaagcgctc
taaagtaggttggaagggtagagttttaacatgagacttaagacttgggA
GGACCTTAGTatttgaggatccaaaagtccaagAATGATCTAACAGGGCT
CGGAATATAGCCTaaaagtctataaacccctcccgaattgaaatattaga
ataaatttatcaattagctcAAAAGTGACGttctcgcccgagctttaaat
tgctaaaaacgagaaattaaccaaaattctcaatatattttgaccgagat
tgttGGCAATCTACTGATAGTGCTCGTGTGAATTGAAATTAATGATTATT
TATAAATCCCAATTAAGTACGAATTCCTTTTTAATGAATTGACCGAAATT
TAATCTTGCTTTAGTCATGTCACCCAGCCAAAGCACCAAAAGAGCGTGAT
AGACGTCAACTGATGATGATGCAAGACCCTGGGTTGGTACAAGAAGAGGT
CGCTTATATGAAAGAATGGGCTGACCAACCTGTTGAACTTGGTTTCTTTG
TCAACTCTCGCCCAGCTGGTGATTCTGATGGTAAGGTTTTACTCTGTGTC
CTTTTTTATTTGTTAACGtgattatcagatgatttttgatatttggctta
gagataTGGTCCAGAGAGACACCTCTAAATCTTTTGAtccaatttttttc
aaccaatttcaaattcaacttaaagactgtgtaaagactcaattttagag
atttcaaagtctcagcttttgaaaaaaattaggtCAAAAGATTTAGAGGT
GTCTCTCTGGACCATAAAAGGTATCTCTAAACCAAATgtaaaaaatcatc
tgataattCCGTTAATGTTATGTTTACGCCATGTACCAGCTTGTATTGGC
AAAGCTTGACTCTAATTACATGTTGCTGAGTGATTTAGAAATAACTTTTT
CTCGATAACTCAGTAACAAGAGTTCCTTTGCATTTTTCTTATCAGCAAGG
GGAGGGGTACACTTTACAGCAAAACGGTGGTCTTTTTGAATGTCAGTGTT
GTATACCTATTCTAATGATTTCAACTCGAGATCGTGGTCGAAGAAACTCG
TTTTTTATGCAAACCGTTTCTTTCAGTCAGTGTTCTCAGGCTCTTAGTAA
ATTGATCTAAGAAAGCTCTTACTCAGCCCTGAAAGTATAGCTCAAACtta
aatttgtcatttttcggTCGGATAAAGTTCACCAAATCTTGCCCAGGTAt
taatgaatgaatgttcaTTCGATAACTCTATTTTAGAACCCGCTCAATCA
GCTGCACGCCGTAACCTGATCACTGATAAACCGTCAGCACATGACGAAGG
TAGCGGCGCCGGTTCAGAATTCCGTCGTGACGAGATCTTAAAGAAACCGA
CGGCACCTTTGAATAATGACGAAATGAATACACTAACTGGTGAAGTTAGG
agcaaaatcgaaaaatccaaacCCATCGAACAATCAGTAGAGGACCCTGG
AGATAGAAGAAAGGTATTAATCAAACTCTTATTTTTTGTTGGAACTAATT
AAATTATAGATATTTATTGGTAGTACCTACTTAAGATTATAACACAGAAT
CTTCACTACAGTCGACTTTcgttaattcgaactcgaacggggaatcttaa
TTTTTCGTCGAATTACAAagtgattcgaattatagaaagaatcgaataat
agaggtttgAATGAGCAAGAGTCTATTGTATGTTCTTTTTACACGAGATG
TACGCTCacaaaacattttctctttttgaagtagctcaagtaGAAGAAAA
GAGTTGAAGGTTTAAATATCCCCTGAATCGTCAAAACACACTATTAAGAT
TAAACCAGCAAGTTAGCTTCAGTATATCTTTTTTGGAATGCCGTGAAtta
taaatttgtttattttaggCACGCTCTAGTGTCACGTGTCAGGGCCAAAA
AGAATGGATTCAATGTGACGGCCCGTACGAACTCATTAAAATACAAGACG
CATTTTGGGGCCGTGATGACACGCAAACTTGTACCAAAAGTGACGTAGCA
CGTGGTTTCAAGACCGGTCAAAAGTGTGTTCAAGAAAGTGATAACGTGAT
GAAGAAAGTTCGTGAAGCGTGCGATAATGAAAACGTGTGCGAAGTCGTCG
CTTCTAACATTTATTTCGATCAAACAGACTGTCCAGATGTGTATAAATTT
TTAAGACTGAAATGGCAATGTGCTCCCAGTGAATCTAGGATCAAGGAAAC
AGCATAGATTACATAAATTACATAATTTTATCATTCACCAATGTTAGACG
TGTACATTCTTCCCTGCAGAGAGAGAGTCGGCTCAATTTTGACGATGCGA
TGGACGAGTAAACAACTTGGAATGAAATGTTTTTGTGCCCCCCACTGCAC
TTTTAGTTTTATGTATACAATTTGACGATTTACCAAATGGTATCAAAACG
TACAATTGAATGTTGGTTAAGTTAGACGTTCTTGGATCTTCTTGTGAAAC
GAATCCTTAACAATGTGACGAAGACGATGAAATAGACAAATTTAATTATA
AGTAACTTTACTCATGATAAGTAccacattgaaaattttttcctgttcCC
TAAGTTTTTGTACGTTGACAAAAAAcctcagaaaaatgaaaaaccactTA
AAGACAATACCCCTTGCTTGCAATACGCCTGTGACACTTGTCAGAAGAAT
ATATTTGGGATTCACTCAAAATAGAACCCAAGATTTTGAGCGAATAAATA
ACCATTTTTAAGTGATTGTAAAAACAGTAACGAGGCCTTCAAAATCAACC
TGTCTTATTCTCATTACTGTTTTATACCTTTATGACTTTCAAACGAttaa
tcaattttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064722-exon-scaffold_423-1491911889:101424..101556 | TCONS_00064722-exon-scaffold_423-1491911889:101424..101556 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1510915933:101424..101556 | TCONS_00064722-exon-scaffold_423-1510915933:101424..101556 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1575043694:101424..101556 | TCONS_00064722-exon-scaffold_423-1575043694:101424..101556 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1491911889:105216..105272 | TCONS_00064722-exon-scaffold_423-1491911889:105216..105272 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1510915933:105216..105272 | TCONS_00064722-exon-scaffold_423-1510915933:105216..105272 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1575043694:105216..105272 | TCONS_00064722-exon-scaffold_423-1575043694:105216..105272 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1491911889:105938..106103 | TCONS_00064722-exon-scaffold_423-1491911889:105938..106103 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1510915933:105938..106103 | TCONS_00064722-exon-scaffold_423-1510915933:105938..106103 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1575043694:105938..106103 | TCONS_00064722-exon-scaffold_423-1575043694:105938..106103 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1491911889:106810..107036 | TCONS_00064722-exon-scaffold_423-1491911889:106810..107036 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1510915933:106810..107036 | TCONS_00064722-exon-scaffold_423-1510915933:106810..107036 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1575043694:106810..107036 | TCONS_00064722-exon-scaffold_423-1575043694:106810..107036 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1491911889:107442..108383 | TCONS_00064722-exon-scaffold_423-1491911889:107442..108383 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1510915933:107442..108383 | TCONS_00064722-exon-scaffold_423-1510915933:107442..108383 | Clytia hemisphaerica | exon |
| TCONS_00064722-exon-scaffold_423-1575043694:107442..108383 | TCONS_00064722-exon-scaffold_423-1575043694:107442..108383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:101424..108383 + |
Blast
The following BLAST results are available for this feature:
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