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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064778 ID=TCONS_00064778|Name=TCONS_00064778|organism=Clytia hemisphaerica|type=transcript|length=186bp
CCTAGCCCACTGATAAATTTCACATTCATACTGAATGTTCTTTGAGCCGG
TACAGTAGTCATGCCATTTGGTCCTATCACAGTTGGTGGTCCGTGATAGG
AATAAGAAGGGCTTCTTTCTGGACAGCAGAGACTGCGGATCAACCCAATA
GGTATTATAACCAacatttttattctttatttacta Run BLAST on NCBI transcript from alignment at scaffold_423:348605..357874- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064778 ID=TCONS_00064778|Name=TCONS_00064778|organism=Clytia hemisphaerica|type=transcript|length=9270bp|location=Sequence derived from alignment at scaffold_423:348605..357874- (Clytia hemisphaerica)
CCTAGCCCACTGATAAATTTCACATTCATACTAAATGTTCCTTGAGCCGG
TACAGTAGCCATGCAATTTGGTCTTATCACAGTTGGAGGTCCGTGATAGG
AATAAGAAGAGCTTCTTTCTGGACAGAAGAGCCTGCGGATCAACCCAATA
GGTATTATAACCAACATTTTTATTCTTTATTTACTAAAAAGAATTTACAT
GATTATAGGTATGAAAAGGTATAACAATCGGCATCTACCGACATCGTTAC
GCAGGCACGACGGAAGCTTTTTATATCTGGTACGGCGAATGAGGAAATTT
AAGCGATTTTATAGCGATTTGACCGACGAAGAGGAAAACTTCGGGTATNN
CAGAAACGTTTCTCATATTTCGCAACCTCTAACAGATTTGCGAGTGCTCC
TTACAGACCACTACCTAAAGCTCAGCGATTTAGACTATAAACGAGAGGAT
TTTTCATATGCGAGATACGAGTTACAAGTTACGAGTTACGAGTTGCATTT
AGAACCACGAGTTGCGAGTTACTTTTTACGAGTTACGAGTTACGAGTTGC
ATTTAGAACCACGAGTTGCGAGTTACTTTTTACGAGTTACGAGTTACGAG
TTGCATTTTAACAAAATAAAATCGCGAGTTGCGAGTTACGAGTTGCATTT
TAACAAAATAAAATCGCGAGTTGCGAGTTACGAGTTGCATCTTAACACAC
AAAATTCGCGAGTTGCAAATTAAAAGTGCGAGTTGCAAATTGAAGGTGCG
AGTTGCATATTAAAAGTGTGAGCTGCAAATTAAAAGTGCGAGCTGCAAAT
TAAAATCAAGTCTGAGATTGTTATCTTAAATAATAACAGCACAAAAAAAG
CTAAACCCAAAGCAAAGCATGGAAAATTCAGCCAAACTGTTTACGTTTTG
TGACTAAAGTTGTGAAACCACTCAAATCACACTTTTTTTCGCTCATTTTT
GTATAAAAACAAAACAGAGCTTTACATAACTTTAAGTTTTGAAAGGAAAT
GCGCGTGTTTCTTCCTATCGAGAAACATCTTTAATGTTGCTTTTAATAAA
GTGGACGTTACCTGTCATTTTCAAGACAAAGTGACACTTTTTGACAAAAT
TATTGACAGGCTACTTAAGTGTGATACCTGCAAGCTTTATTAAACCAAAT
ATTTTAATTGTACAGAATGAGATGCCTTTGATATAAATGGATAAATATTG
TCAAGAGACAAACTTTGGGAAGGGCAGTTTTAGAGATTCTAATCAATTAT
TCTATTGTCCTTATGTTGATAAAATCACTTATTTTTATGAAATAATGATC
TGATGGTCAAATATAAAGCTTCTTTAAGCAATCCCATCAAAGGTTTTGTC
CCCGGGGGTGGGGGGTACTACCCTTGCCGACTGACGGGGATGCTCCGCTG
AGGTTCCAAAATATGACTCTACATGGGACTGGTTTTTCAAAAATTTTGCC
GAAATTTGCGAAAAGAGTGACCTTGATTGGAACTGAAAATCCAAAATTTT
CTAAAATTTTCTGCTTTTACCCCAAAACTTTCGAAAAAGGCACTCTACGA
AGGACTTATTTGGGGTTTTGTCACCTATAAATTTGATGCTGATACACGTT
TTTTTTTTATAAGGAACCTTAACTTTGCTCTGAGCCTGGAGTTCCTTATT
TTTACAGAAAATTTCAGCCTCAAAGTTCCTTATCAGTTCCTTATTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGA
TTGTACACGCTTTGCATGTGATCTTATAATTACTGTAGGTGAAACAACCC
CTTAGAGCCATCGTTCTCAGCCTGTTACCTTGTTACCCCCTATTACCCCG
TGTTACCCCATGTTACCCTTTTTAGTAACAACGCATCCAAACCTATTATC
CCCGCCCGGGACACTTTTCTCTACAGTTCTTTACACTCGTAAATACTTTT
TGTACATTCTTTTTCTTTCTCCACCAAATATTTGCTCTTCTTATGTATAA
TAGTGAGCAGCAATAATCATTTAATCATTTAAAAAATATCTTTCCTTTTA
TCAATAGANNNNNNAATTTGTAACACGCACTTTTAATTTGCAACTCGCAC
TTTTAATTTGCAACTCGCACTTTTAATTTGCAACTCGCACTTTCAATTTG
CAACTCGCGAATTTTGTGAGTTAAAATGCAATTCGTAACTCGTAACTCGC
GATTTTATTTTGTTAAAATGCAACTCGTAACTCGTAACTTGTAAAAAGTA
ACTCGCAACTCGTGGTTCTAAATGCAACTCGTAACTGGTAACTCGTAACT
CGCAACTCGTATATTATCATATCACATAAACGATAAGTATAAACGACTCT
ATAAACGATATATGGTTTAATACAAAGCAAAATAGGTTAAATTGGTCATT
TATTTAATCATACATACAGAAAGGATTCACGGATAGAAAGCAACCCTATA
AAATACATATTTAACTACATAGTGAGGAATAGACTAGTAAACTAGTCGTT
GAAAACAGACTCATATACAAAAAATCAAGCTCCAAATAAAAAGAATCGAA
GGGGTGAAGTTGCTTCTCTTTTCTGAATTTCAACGACTAGAAGCTATTTC
CCTCAAAAAACGTTGTTTAATTTTACAACTTTTTTTAGGTTTTTGAGAAT
CCATCCAACTTTTTTGACTAAATGATATTTCATAGTAACATTGAACATGG
GAACATATTAATAAATATAAGCATTTCTAAAAACGCAATAAACAGAAAGG
AAAATAAATGCAATCCCGCACGGGTCAGACACACAGAAATTTGTATGTCT
CTCCTTACGATTTTAGGTGAAGAAAAAAAGGCGTTGGAAGTAGCTTCTAG
TCGGTTATTTTCCTTTTCTCTCATGCACGCTGAATATTTAATTAGTGTTT
ACATTATTTGATTGACAGTTTTATTATAAGGTTATAAGTAATAACCGACT
AGTTTACTAGTCTAAGTGAGGAAAAGAGTATTTAAATACAATGATATGAT
AACAATTACATAATATTTTCGTTGGAATACATTACCAAACTTCATTTGTT
TATTGGGTTATTTTACTGACAGTTGCTTTTTTTACTGGTAATTTTCTGCT
TCTACATTTTCAAGTTTTTTTGTTCGAGGTCGGTCATCAGAAATATTGGA
ATATGTTGTCAGGTACTTGTGGTGGTAGACGTTTCCATTGAACAAAACTT
TCAAACAATCTACTTTGCATATGGAGGTAGTTGGGCATGTGTCATCTGGT
TAGAATAAGCAAGATTCTGAACACCTCCCATATGCGCTGTGGTTGTAACA
CATTGTTGGTGATTTGGATAGACGCCAGCAGGGTAGATGACTTGTGATTG
TGGTGGGTAGCCTGCAGCAGGTGGGTAAAAAGCTTGTTGACCAGGGTATT
GACATTGACCAGAAACGACAACACCATTAGGTGAGACGAGATCAGTAGGA
GTTGGGTGCTCGTTCATAACCAATGCTTAAATGACAACATTAAAATGTTT
CATAATTGAACTTTACAGTGCTTTATGAGCCCAAGGGTACGTTTTCAGGC
TTTCTAGAATGCACTGTAAGGACCGAAACGAGCAGTCTAAGGGGGTGTAA
AAAGTGAGAACAACGGAGATTTTGGGAAATCTGACCCCCTGACCATCTTT
TGTCGTAAAATGAACAGAAAATTCCAAGAAACTGACAGAGTCGATTTTTC
ACCCAAATTAACCCAATATTTGCTAAATTTTCACTTTCAAAGGGTTCAAT
TTCGAGACCCTGATTGTTGCCTGCATATACTGTTTCTCGATTTGAGTGCT
CACCCAGGTACTCCAGACAGTAATGTGGTTATGTTGCAAGTGAATGCCCA
TTTACTCACCTCCTGAGGTATTTGATCGACAACAACAACCTGAGTTTCGG
CAGCAAGTGATTGAGATGGTCATGGAAATGATAAACTCAAGGATCATCAG
ACCCATGATTGTGGCAAAAATTGGTGCACCAACTTTCTTATCGTCGTAAC
AATCTCGGAAGAGCTGATAATCGTACGTGTCATTTAAGTTGTCATATACA
TCTAACAAATTGCAATCCTTGTAATGACTACAAAGAAGAAGTAAGAAATT
TTTTGATATTTTCAACGGGCTAACTTTGACTAAATATTCAATAGGGGACA
CTTGGGGATGGGAAATGCACAACTTAGGGATGATTTTACTGAGTTGTCAG
GTTGCCAGTATGGGTTACAGAAGAGACGGTCTTTTTTTATGAGAAAATGA
TTATTTTCATCATGGCTGGTGTGATTGGCATCATTTTCAGGTTCGTGATT
TCGTAATTTAAGATTTTAAAGTGCGTGATTGCGTGATCGGAGGAACAAAC
GTGATCGTGATAGAAAGGAAATTTAATTCGTGATAACGTGATTTGGAATT
TTTTTCGCGGGATTGCGCGATTTGAAAGGTGACTGGGGGCTCCTTTATCA
ATACCATTGTTCTTCACTCATGAGTATTTTTTCGAGTATTTTATAACTTC
CTACGGTGACTAAGAAAAAACCTATGATACTGATGGCAAAGTTTTTTACC
TATACCCCGTAGTAATCAACTTTTTTATCATTGAAAACTCTTTTGAGAAG
TGAGATTATTTATAATCTTTCTCTATAAAAATGACGAGTTCTTATTGAGT
TCTTGAATGATTACAAAAACTTTTTTGAGCATCCTTCTCGAAGTGAAATA
TGCACAGATTTGTGCATTCTTTCTCTTTAAATTGAATAAAAAATAGCATG
TACAGTATGTGGCCCCCAAAACGGCGATCAAATTTGAAATGTCTCTCAAA
TCTAGAGGAAAAGAGATTTCACAAAAATTTTTGCTGCATGAAAACCTTTA
ACATCTCTACTTTATTTCCTTGATGTTCTTTTTCAAAATTTTCAATTTCA
ACAATATTTTTCAATCGCTTAAAGATAGGTAGCTTTTTTCTAATGGCCCC
CAAAACGGAGGTTTGAAATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTAGTATAACCAT
CATTCTTTCAAAATAAACAAAAATCGTTAAATTCTGATAAATCTACAAGT
CAGAATCTTCATTTTAATGAAAGCCTCCGTTTTGGGGGCCGTCTCCGTTT
TGGGGGCCATATACTGTAACAGATACACGAATCTTATGAATTAGGATACT
TACACAAAGCCACTTAAGAAAAATCTTCCAACAAAAAACGAGACGACACA
ACACACGATATTGAATCCCATATTGACACCATTAATAGATGTTTGTTTAG
GCTTCTTGGCCGACATCACACCAACAATACCGGTGATTAAAATCCAGATA
CCAAACCAGATGCCAGAACAATTTTCATTCACCGAATAATTATGATGGAA
AACTGCTTTTGCAACAATCGCCAAGACAGCAGTTAATAGTCCGATCACAA
TTTGCGTAATCCCTAGAAAAATATAATTAAAGATTTTGAAAAAGTTTGAA
TAGTATATGAGGAGCTTTGACTCGATCAGAGATTCCAAATCGTACACTGT
ATGATATCACCCCTATAGCACAATGCACTGAATCTAAAAATAGCAATAAA
TCTGCCCAAATTTATTCGTTTGTACGACTTGCAATCCCATCCCCCTTTGC
GTTAATTAATTACAATATCAAAAGAAAGGTTATAACATCGATGGTTATAA
CTTTCACGGTTTTCCAATCATTTCGAAATGAATGATAGGATTGGAACTCG
TACAAAGTTCTAGTTGAATTAATTATGAATATATACAGTGCCGTAGGAAG
CATTTTTATATTGAGGGGGCTGAATACCGTGAAAAGCACAGGTAAAAATC
ATATATTGACGCTGTGCCGACGAATAGAGATTCTATGCATCGCGCAATCA
ACGAAGACAAAAGTAACCATGACGACCATCCAAGATCTTGGATGAAGTTC
AAAGTTGATATTTTTATTCCCGTCGTTGAAAACACAACAAAAAANNAGAT
AGAGAATCATAACATAAAGTCTGTCTATTATTTCGATTCAATTAAAAGTG
ACATTCCACTATTAATAGTTTAGTAATTACTGTTATACATTTGGGGATCA
TGTAAAAGATTTCTTTCGAAAGAAACTCAATTCGATTACACTTGGAGGTT
TTTGGGGAATTCGTAAATAGTAAACTGCACACTGATACAGTCTGCTAGAC
ATTAATAAGGTAATATTTGCTCTTCATCTTTGATTCTTTCTACAGTGATT
AGATTAACACATGCGCGATAAAATTTCTATTATTGGTCTTCAGAGGTTAA
TATATTCCTTGAAAACTTAACCTCTGATACTCAGGGTAGGGGCTGAAGGT
AAGTGACACCGCAAGGGCCAACGATGGTTTGGCCCGAGGCGAGAAATTTT
GAAAATTTGAGCTCTAGATTGCTTGAAAATGCACTCAAAACAAAATGCTT
TCGAGAAAAAACAACATAAAACTTTGCATTTTGCATTTCATGAAACTTCA
GAGGACCAGTGCGTACTAAAATTCCCTTACAAGATATAAGCTTTTACACA
TCATTTTTTGGCATTTCTTATCTACTTTCTCCAGGGATAGGTGCCAAATT
TGGGTCCAGGTGACCCTTTCAATACAAGCTTTTTTGTGAGTAACGTCAAT
TTTTACCAGCTGGATTTTTTTGGGGGTCTGAGGAGTGACAAATCTTTTAG
CCAAGCTAGCGTAAAGAAAAATCATTACAACCCATAGATATTTATACATC
GTTGGAAAGAAAAAGAACTGAAGTTTCTTCTGAGAGGGGTGCCAAATTAC
AAGACAAATATTTCTTACATTAAATGCACTTAGAAAATTGCCTTTTCTTA
GGATATAGCTGAAAAAGGTTTTGGTTGTAAAATAACTTGGAATTTTCTGT
CATAACTCATTCGTAATGTAATTTTAATATCAATCAAAAGAGGAAAAATT
TAGGGTTTCAAAAATACCAAACTTAGCCCTTTGAAATAAATTCAAAGACT
GTAGATAGTGATGATACAAAAGTGCTAAAAACATTAACATTTTAAAAAGC
TTCTCTTTTTGACGTAAAAAAGTGACGTCAAACCCCCGGATTTCAACGCA
TGACACAAAACGCAACGTCAATTCTGCGCCATCTTTTCGTTTTAAAAATG
TTGCAAGCAAACTTTGATTGATTTCAAAAGGTAAGAGCTTATCCGTATCG
AGAAAAAAAATTCCTGCTACTTTTGTGGGTTTTGTATAGGTCTACGATTC
AGACTAAATGCTTTTGCGTTTGAGATTAAAGAAAAAGTTACTACTTATAA
GACACCAGACAGTTGCATAGGTGGTTTTAGACCGTGTAGAACTGATCACA
TGGAGAGGCTTATAATTGTGATTTCATTGTCTTTTAACGAGCGTTGGACT
CCTCGCATGTTTCCGATGTACTTGCATTTTTGTCTCAAATCCACCACTAA
TTTCTGCTGACGTAATCATAATTTCGAAAAATTTTTTTTTTCAAATGATC
GACTAGTAATTTTAAGACATGCCATAACTTACCCGAGTGCACCATTGTCC
CAAATCCGCCAATGAGTCGATGCCATTTGACCTAGTGTCAGCCGAGGGTT
GACATTACTGTTCCGGGGATAAGAATTCATTCAATATTGATCTCTTTGTT
AAAGAATCTTCAGATTTTCTCATTTCTATTACATTCCCCAGAACAGCACA
ATGGTCCGAGACCCATTAGGATCTCGGTAGAACCTCCAAATGTCAGCCGA
GGGTTGACATTACTGTTCCGGGGATAACAATTGATCGAGATTAATTTGAA
GTTACTTTTTAGTATGCANTGAATAAAGATCTTACCTAGCCCACAGATAA
ATTTCACATTCATACTGAATGTTCTTTGAGCCGGTACAGTAGTCATGCCA
TTTGGTCCTATCACAGTTGGTGGTCCGTGATAGGAATAAGAAGGGCTTCT
TTCTGGACAGCAGAGACTGCGGATCAACCCAATAGGTATTATAACCAACA
TTTTTATTCTTTATTTACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064778-exon-scaffold_423-1575043694:357852..357874 | TCONS_00064778-exon-scaffold_423-1575043694:357852..357874 | Clytia hemisphaerica | exon |
| TCONS_00064778-exon-scaffold_423-1575043694:348605..348767 | TCONS_00064778-exon-scaffold_423-1575043694:348605..348767 | Clytia hemisphaerica | exon |
| TCONS_00064778-exon-scaffold_423-1510915933:357852..357874 | TCONS_00064778-exon-scaffold_423-1510915933:357852..357874 | Clytia hemisphaerica | exon |
| TCONS_00064778-exon-scaffold_423-1510915933:348605..348767 | TCONS_00064778-exon-scaffold_423-1510915933:348605..348767 | Clytia hemisphaerica | exon |
| TCONS_00064778-exon-scaffold_423-1491911889:357852..357874 | TCONS_00064778-exon-scaffold_423-1491911889:357852..357874 | Clytia hemisphaerica | exon |
| TCONS_00064778-exon-scaffold_423-1491911889:348605..348767 | TCONS_00064778-exon-scaffold_423-1491911889:348605..348767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:348605..357874 - |
Blast
The following BLAST results are available for this feature:
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