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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064798 ID=TCONS_00064798|Name=TCONS_00064798|organism=Clytia hemisphaerica|type=transcript|length=1915bp
AGATTCGGTGCTGGTATGAGGTGAGACGAAGAAGAGATTCAATAAGACTA
GACCAACATTCATAAGGTTAGTTTGATAAAACCGTAAAGAGCTATGGATA
TAATATGATAGTTTGAGAGTTTCCGTCAGCGCAATACCCGTGTTAGAAGC
AGAAGACAGACGATTTATTCAACAATTTGTGGAAGCAACAAATTATCAAC
GACATTGTCGACTACAGGTTGAGCGTACATCAATCAAGACAACGAACCAG
AGATAGATACACCGTTTTAAGTATTTAATCTTTACTCTTTAGAAGTTCTA
TTCAATTATGAATGAGAAGTGAACCAACCCTGCCTTTTATACGGAGGGAC
TGGTGACGAAACACGATCTCGACCCCGCTATCACCATCATCACATCACAC
AAAGTAACAACCAAAATCAAAAGGTGAAGTGCAttgcaaaaaatagaaaa
aaataaacaaataatacACAAatgaaagaaaggaaaattcGTTTAGTCTA
CATTGTGGTTTTGAATAGCCATAAACACTGCAGCTTTTGAAGAGCACGAG
TATGTATGTAACCTTTCTCATATACCAGACAACAGCCACTCAACATTTTC
AACAACAGTGCAGTGAGCGCCATCAAGCGCGGAGCAGTATGAGAGTGAAA
ACGAGACAAAGTGCTATATATGGAGTAGAAAAGGTCTTAGGGTTCAACTG
CGTTCTTTTTATACTGGAGAGGATCGTTAGATTTGTTTTGCTCAAGTATT
TCCGTTTTTGCATCTACTCGTCAATTCAAAAGGAAATAACGATATGTTCC
ACAAAAAAACTGTTCATTTGAGATCTATAGCTACCAAATTTACACTTTAT
GACGTCACATTACGTTCCATATTTTTTTGTGACAAGAAGTTGTTAAAAAG
TAACGTCCTTGACAGGATATTGGACATTGAAAAGAATTCTAAAATGTCCA
GGAAATCAACTCTTTTGCATACAGCATGATTGTTTtgataaattgaaact
tttgttttaATTAGAACAGTGATGAAAGTATTTCATGCAGACCCCCATCT
TTGATACCATCATATAAGCATCTGAAAGAGGCAAACAGaaatatttccag
ggggttagCGAATCTCTTTTTCAGGATGCAGATAACAGGAGAAGGCAAGC
CCACGCTTTGCAACAgtttgtttcaaaatatttttcatatttgatgTCCT
GTGTGAAAAAGAGAATCAGGAAGATGATAGCGTCGATGGATGTCATTTTT
gtcttgttttgaattttcaactctTTGTTGCATTGCTACCTTCCGACtct
tatttttttcgaatacATATCTGCACGATGAAAAACAACAAAGGAACCGT
CCCAGCGTCGAACAGTTTTTCATAAAGTTCTAGATATTCACTTCCCTCTT
CTTTTATccacccctgtgtcacatacCCGGGTGGACCTCCGCCAAATCTG
GCCAAACTTTAGTCCCCAGTGGGAAATGAGctacaatttcagccctacTG
GAAAATTGAAACTGATTTATACTCATTCGGAATtcagagcaaaaaaaatc
tactCCAAAACAGTCCCTACTGGATTTTTTGAGatggaatttctatcccc
atcgggatttagatggaaatttttatccccaatgttggaaaaaagtttca
gcggggctgtgagacaggggtattttTATTTCCGAACGGACGCTAAGAAA
AGGAACAAAGTCTtggaaaaaattagtttttatgaatttaaaattaatca
aaatttaattCCGAGAAcgatttttttagtttttatattttaaatttttt
cgaaacttgAATCTCGATTTTTCGTAATATTCTTCTCCTTCTGCTCCAAG
CCTTGTCAAAGTTAGAATGCCTTCGGCCTTTTGGATAGATTAGAATTTGT
TTACAACTATGTAAG Run BLAST on NCBI transcript from alignment at scaffold_423:260927..262841 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064798 ID=TCONS_00064798|Name=TCONS_00064798|organism=Clytia hemisphaerica|type=transcript|length=1915bp|location=Sequence derived from alignment at scaffold_423:260927..262841 (Clytia hemisphaerica)
CTTACATAGTTGTAAACAAATTCTAATCTATCCAAAAGGCCGAAGGCATT
CTAACTTTGACAAGGCTTGGAGCAGAAGGAGAAGAATATTACGAAAAATC
GAGATTcaagtttcgaaaaaatttaaaatataaaaactaaaaaaatcgTT
CTCGGaattaaattttgattaattttaaattcataaaaactaattttttc
caAGACTTTGTTCCTTTTCTTAGCGTCCGTTCGGAAATAaaaatacccct
gtctcacagccccgctgaaacttttttccaacattggggataaaaatttc
catctaaatcccgatggggatagaaattccatCTCAAAAAATCCAGTAGG
GACTGTTTTGGagtagattttttttgctctgaATTCCGAATGAGTATAAA
TCAGTTTCAATTTTCCAgtagggctgaaattgtagCTCATTTCCCACTGG
GGACTAAAGTTTGGCCAGATTTGGCGGAGGTCCACCCGGgtatgtgacac
aggggtggATAAAAGAAGAGGGAAGTGAATATCTAGAACTTTATGAAAAA
CTGTTCGACGCTGGGACGGTTCCTTTGTTGTTTTTCATCGTGCAGATATg
tattcgaaaaaaataagaGTCGGAAGGTAGCAATGCAACAAagagttgaa
aattcaaaacaagacAAAAATGACATCCATCGACGCTATCATCTTCCTGA
TTCTCTTTTTCACACAGGAcatcaaatatgaaaaatattttgaaacaaac
TGTTGCAAAGCGTGGGCTTGCCTTCTCCTGTTATCTGCATCCTGAAAAAG
AGATTCGctaaccccctggaaatatttCTGTTTGCCTCTTTCAGATGCTT
ATATGATGGTATCAAAGATGGGGGTCTGCATGAAATACTTTCATCACTGT
TCTAATtaaaacaaaagtttcaatttatcaAAACAATCATGCTGTATGCA
AAAGAGTTGATTTCCTGGACATTTTAGAATTCTTTTCAATGTCCAATATC
CTGTCAAGGACGTTACTTTTTAACAACTTCTTGTCACAAAAAAATATGGA
ACGTAATGTGACGTCATAAAGTGTAAATTTGGTAGCTATAGATCTCAAAT
GAACAGTTTTTTTGTGGAACATATCGTTATTTCCTTTTGAATTGACGAGT
AGATGCAAAAACGGAAATACTTGAGCAAAACAAATCTAACGATCCTCTCC
AGTATAAAAAGAACGCAGTTGAACCCTAAGACCTTTTCTACTCCATATAT
AGCACTTTGTCTCGTTTTCACTCTCATACTGCTCCGCGCTTGATGGCGCT
CACTGCACTGTTGTTGAAAATGTTGAGTGGCTGTTGTCTGGTATATGAGA
AAGGTTACATACATACTCGTGCTCTTCAAAAGCTGCAGTGTTTATGGCTA
TTCAAAACCACAATGTAGACTAAACgaattttcctttctttcatTTGTgt
attatttgtttatttttttctattttttgcaaTGCACTTCACCTTTTGAT
TTTGGTTGTTACTTTGTGTGATGTGATGATGGTGATAGCGGGGTCGAGAT
CGTGTTTCGTCACCAGTCCCTCCGTATAAAAGGCAGGGTTGGTTCACTTC
TCATTCATAATTGAATAGAACTTCTAAAGAGTAAAGATTAAATACTTAAA
ACGGTGTATCTATCTCTGGTTCGTTGTCTTGATTGATGTACGCTCAACCT
GTAGTCGACAATGTCGTTGATAATTTGTTGCTTCCACAAATTGTTGAATA
AATCGTCTGTCTTCTGCTTCTAACACGGGTATTGCGCTGACGGAAACTCT
CAAACTATCATATTATATCCATAGCTCTTTACGGTTTTATCAAACTAACC
TTATGAATGTTGGTCTAGTCTTATTGAATCTCTTCTTCGTCTCACCTCAT
ACCAGCACCGAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064798-exon-scaffold_423-1491911889:260927..262841 | TCONS_00064798-exon-scaffold_423-1491911889:260927..262841 | Clytia hemisphaerica | exon |
| TCONS_00064798-exon-scaffold_423-1510915933:260927..262841 | TCONS_00064798-exon-scaffold_423-1510915933:260927..262841 | Clytia hemisphaerica | exon |
| TCONS_00064798-exon-scaffold_423-1575043694:260927..262841 | TCONS_00064798-exon-scaffold_423-1575043694:260927..262841 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:260927..262841 . |
Blast
The following BLAST results are available for this feature:
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