TCONS_00064818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064818
Unique NameTCONS_00064818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064818 ID=TCONS_00064818|Name=TCONS_00064818|organism=Clytia hemisphaerica|type=transcript|length=339bp
CGCCCACAAGTGAGCGACGTCGACAATTCCATTCTCAGCAATGAAACGGG
AAACCTCAAACTTACCGACACGTTGCACCTTGGGTGGGAGTGGCTCACGC
TGAGCTGCGGTTTGTGACCTGGTTCTTGGCCGACTAGAAGCTGTGGACTG
CTCGTTGACATCCTGCTCGTTGACATCCTGCTCCCTGGCNGACCTGGTTC
TTGGCCGACTTGAAGGTGTGGCCTGCTCGTTGACATCCTGCTCGTTGACA
TCCTGCTCCCTGGCTTCTCTCCTGGCTCTGGCATTCGCCCGTCTCTGCGC
AACTGCCTTTTTTGTTCGGGTTGACTTCATGCTTTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00064818-protein

>TCONS_00064818-protein ID=TCONS_00064818-protein|Name=TCONS_00064818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
VESMKSTRTKKAVAQRRANARARREAREQDVNEQDVNEQATPSSRPRTRX
AREQDVNEQDVNEQSTASSRPRTRSQTAAQREPLPPKVQRVGKFEVSRFI
AENGIVDVAHLWA
Run BLAST on NCBI

transcript from alignment at scaffold_424:48519..48857

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064818 ID=TCONS_00064818|Name=TCONS_00064818|organism=Clytia hemisphaerica|type=transcript|length=339bp|location=Sequence derived from alignment at scaffold_424:48519..48857 (Clytia hemisphaerica)
GTTGAAAGCATGAAGTCAACCCGAACAAAAAAGGCAGTTGCGCAGAGACG
GGCGAATGCCAGAGCCAGGAGAGAAGCCAGGGAGCAGGATGTCAACGAGC
AGGATGTCAACGAGCAGGCCACACCTTCAAGTCGGCCAAGAACCAGGTCN
GCCAGGGAGCAGGATGTCAACGAGCAGGATGTCAACGAGCAGTCCACAGC
TTCTAGTCGGCCAAGAACCAGGTCACAAACCGCAGCTCAGCGTGAGCCAC
TCCCACCCAAGGTGCAACGTGTCGGTAAGTTTGAGGTTTCCCGTTTCATT
GCTGAGAATGGAATTGTCGACGTCGCTCACTTGTGGGCG

Coding sequence (CDS) from alignment at scaffold_424:48519..48857

>TCONS_00064818 ID=TCONS_00064818|Name=TCONS_00064818|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_424:48519..48857 (Clytia hemisphaerica)
GTTGAAAGCATGAAGTCAACCCGAACAAAAAAGGCAGTTGCGCAGAGACG
GGCGAATGCCAGAGCCAGGAGAGAAGCCAGGGAGCAGGATGTCAACGAGC
AGGATGTCAACGAGCAGGCCACACCTTCAAGTCGGCCAAGAACCAGGTCN
GCCAGGGAGCAGGATGTCAACGAGCAGGATGTCAACGAGCAGTCCACAGC
TTCTAGTCGGCCAAGAACCAGGTCACAAACCGCAGCTCAGCGTGAGCCAC
TCCCACCCAAGGTGCAACGTGTCGGTAAGTTTGAGGTTTCCCGTTTCATT
GCTGAGAATGGAATTGTCGACGTCGCTCACTTGTGGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040660XLOC_040660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064818-exon-scaffold_424-1491911889:48519..48857TCONS_00064818-exon-scaffold_424-1491911889:48519..48857Clytia hemisphaericaexon
TCONS_00064818-exon-scaffold_424-1510915933:48519..48857TCONS_00064818-exon-scaffold_424-1510915933:48519..48857Clytia hemisphaericaexon
TCONS_00064818-exon-scaffold_424-1575043694:48519..48857TCONS_00064818-exon-scaffold_424-1575043694:48519..48857Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064818-proteinTCONS_00064818-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_424supercontigscaffold_424:48519..48857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55541	5.18302	1.80217	0	36.538	32.7506	17.0558	14.9769	6.048	11.2755	17.4664	14.1735	12.5295	9.98427	12.3265	12.3339	17.2088	9.59706	8.02927	10.6919	7.47417	2.52794	9.22295	9.76108	17.4468	21.7978	5.54497	6.37227	0.89828	2.57186
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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