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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064828 ID=TCONS_00064828|Name=TCONS_00064828|organism=Clytia hemisphaerica|type=transcript|length=2469bpRun BLAST on NCBI protein sequence of TCONS_00064828-protein >TCONS_00064828-protein ID=TCONS_00064828-protein|Name=TCONS_00064828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp MNTRRGINTLAKFAQQVQKDASVITRTTPVLHNVQKRDSSSGSFAMGIFSRun BLAST on NCBI transcript from alignment at scaffold_425:20757..33202+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064828 ID=TCONS_00064828|Name=TCONS_00064828|organism=Clytia hemisphaerica|type=transcript|length=12446bp|location=Sequence derived from alignment at scaffold_425:20757..33202+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_425:20757..33202+ >TCONS_00064828 ID=TCONS_00064828|Name=TCONS_00064828|organism=Clytia hemisphaerica|type=CDS|length=39438bp|location=Sequence derived from alignment at scaffold_425:20757..33202+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064828 vs. Swiss-Prot (Human)
Match: ACADV (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADVL PE=1 SV=1) HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0 Identity = 346/604 (57.28%), Postives = 435/604 (72.02%), Query Frame = 2
Query: 311 ITRTTPVLHNVQKRDSSSGSFAMGIFSGHANVDQVFPYPNALNEEQMEYLESMIDPVEKFMKEKXXXXXXXXXETIDPETLEGYKEMGAFGLQVPEDMNGVGFNNTQYARVVEIVGKYDLGVGIALGAHQSIGFKGILIAGNEQQKQKYLPTLATGERFAAFCLTEPTSGSDAASIRTSATLSEDGKHWILNGGKLWISNGGIADVFTVFAQTPVKDEKTGEMKNKVTAFIVERDFGGVTNGPPEKKMGIKCSNTAEVFFENVPIPVENVIGGVGEGFKVAMNILNNGRFGMAAALSGTQKSLIAQATDFAANRTQFGKKIVEFGGIQEKLANMALKHYVTESMAYVVCGMMDKGFKDFQLEAAISKIYASEAAWHVADETIQILGGMGYMKDTGTERVMRDLRIFRIFEGTNDILRLFIALTGLQNAGKDLRDLQKKISNPFANMGTLVEQGILRSKRAAGLNTGPDFSSSVHADLRSQSDSVSKCIAQFGETSEGLLIKYKKDIINQQMICSRFADAAIDIFGMVAVLSRASNALTNGTASAEHEKQLAQIFVSEASLRTARNLKSCRDHDNITNDKLKS--KIANEIISEQGVVAQHPLGF 2116
+TR P + S SFA+G+F G DQVFPYP+ LNEEQ ++L+ +++PV +F +E ND A NDA E ++ T +G KE+GAFGLQVP ++ GVG NTQYAR+VEIVG +DLGVGI LGAHQSIGFKGIL+ G + QK+KYLP LA+GE AAFCLTEP+SGSDAASIRTSA S GK++ LNG KLWISNGG+AD+FTVFA+TPV D TG +K K+TAF+VER FGG+T+GPPEKKMGIK SNTAEVFF+ V +P ENV+G VG GFKVAM+ILNNGRFGMAAAL+GT + +IA+A D A NRTQFG+KI FG IQEKLA M + YVTESMAY+V MD+G DFQ+EAAISKI+ SEAAW V DE IQI+GGMG+MK+ G ERV+RDLRIFRIFEGTNDILRLF+AL G + GK+L L + NPF N G L+ + + +R AGL +G S VH +L + + + QF E LIK+KK I+N+Q + R AD AID++ MV VLSRAS +L+ G +A+HEK L + EA+ R + + + D + ++ I+ ++ GVV +PLGF
Sbjct: 60 LTRKKPA-------KAESKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELSRSGELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQS-DPWQQELYRNFKSISKALVERGGVVTSNPLGF 655 The following BLAST results are available for this feature:
BLAST of TCONS_00064828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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