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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064845 ID=TCONS_00064845|Name=TCONS_00064845|organism=Clytia hemisphaerica|type=transcript|length=638bp
TTTAAAACTCTTATAAAGGACCTTTAGGTACAAAATTTCTGGTCAAATTG
AGCATTCGATCTTGAAGATGTCGTGCGAACTTTTGAAGATTGTTCTTTTT
CTTGGACTTGCTACATTTTCCCAATGTGTTTTCAAGCTTGAAAATTGTGA
CAAGACAGCTCCGGTGCAATACACCCTTCTGAAAGCACCTGATTACTTGG
TCCTTCGCAATAATGGAAACATCAAATTGTCAGCATCGATCAAAGTCAAA
TCAAGTCAATCGTTACCAAGACATTTAAGGATGAAGATTTCACTTTCCAA
AAGAATTGGTTTTGTCTGGATTGACATCCCTTGTGTCGGATGTGACATCA
AAGTCGACACATTCACCATCCCAGAGATCCGAACCATTCGAAGAGtatgt
tcacaaaattgtactCTAACAGCTGAAGATATTGTTTTTCCGTTATCTTC
TCATATCGAAGAATACATTCCTGGTATTTTCCCAAATATGCTTCTTGAGG
GTCATTTCTACATCAAGATGGACATGGTCGATGAATCAAATCACAAAAAC
AGAGTTGTGTGCGTCAAAGGGTATACTGATGTCAAAACTTCGTAAATTAA
AGAAATAACGAAagataattcttgaaaaacgaAATAAC Run BLAST on NCBI protein sequence of TCONS_00064845-protein >TCONS_00064845-protein ID=TCONS_00064845-protein|Name=TCONS_00064845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MSCELLKIVLFLGLATFSQCVFKLENCDKTAPVQYTLLKAPDYLVLRNNG
NIKLSASIKVKSSQSLPRHLRMKISLSKRIGFVWIDIPCVGCDIKVDTFT
IPEIRTIRRVCSQNCTLTAEDIVFPLSSHIEEYIPGIFPNMLLEGHFYIK
MDMVDESNHKNRVVCVKGYTDVKTS Run BLAST on NCBI transcript from alignment at scaffold_425:219523..221466+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064845 ID=TCONS_00064845|Name=TCONS_00064845|organism=Clytia hemisphaerica|type=transcript|length=1944bp|location=Sequence derived from alignment at scaffold_425:219523..221466+ (Clytia hemisphaerica)
TTTAAAACTCTTATAAAGGACCTTTAGGTACAAAATTTCTGGTCAAATTG
AGCATTCGATCTTGAAGATGTCGTGCGAACTTTTGAAGATTGTTCTTTTT
CTTGGACTTGCTACATTTTCCCAATGTGTTTTCAAGCTTGAAAATTGTGG
TAAGTGGTCAGGAATAATTTCTTTTCAGAGAGTCtgcagaaaaaaacatt
tttttcgcaTTAAGGTCACACGGTTAAGCTAAGTGATTATATATCAGGCT
GTTTCTCTGAGTAAAAGTAGGTTCCATAAAGTTGTTTCCAAAGGGGCTAG
AGAGGTATCTTCAACTTTTCCCAGGCAAGGGAAAGCGAAAGCTTAAGATT
TTCATCGCATTTAAGATGACGGATTGGATCTAAGACTTTCTCTGTTTTCt
cgttttatatttttcaaatattggcGGTAAATCTTACTTGCGATACCCAC
CATTTGTATGAAAAACATGCAGGACTCACAATTTATTATATGTAGGAACT
aagttggcttcaaatcctacataAAGGAATCAACTCTAGATTCTTACACT
GAGTTTGGTGTTTCTCATAGACAAGACAGCTCCGGTGCAATACACCCTTC
TGAAAGCACCTGATTACTTGGTCCTTCGCAATAATGGAAACATCAAATTG
TCAGCATCGATCAAAGTCAAATCAAGTCAATCGTTACCAAGACATTTAAG
GATGAAGATTTCACTTTCCAAAAGAATTGGTTTTGTCTGGATTGACATCC
CTTGTGTCGGATGGTGAGAATGTGATTTACTACGCATGCGTCGTTTAACG
CCCAATAGTAGCTTGTTAGAcgaagacatttttttttcattgcgtTTTAA
CCAAAATTGGTTCAGTGGGAAGGTACATTCCCTTCTCACAGCACCGAtcg
ggattgatattcccatgtttttttatggcCGGGGacttgaattccattgt
tttctagccagaaattcagtggggatggaaaaatagcacaatattttgca
gcaTTTTTCTTCACAATATAGTACAGTCCAACGAAGAGGAAAAAGAGGGT
CTCTCTTCCTTGgagcaacaaaataaaaatactgATTGCTATCCCTTTTC
TCATCACAGTGACATCAAAGTCGACACATTCACCATCCCAGAGATCCGAA
CCATTCGAAGAGtatgttcacaaaattgtactCTAACAGCTGAAGATATT
GTTTTTCCGTTATCTTCTCATATCGAAGAATACATTCCTGGTATTTTCCC
AAATATGCTTCTTGAGGTTAGTAAAAttgatgttaattttttttgcattt
tggaATAACCACCTCAATAATAGTCCGTAAACTCCGTGTTATCGGGCTAT
TACATATTAGGGAATCAGAAATAAAGTAAGATAACCCTTAACGGCCTGAG
GTCGAAAATAGGTTTCTTGTTACGATAGCTGAAATCTAGGGGGGGGCTAT
GAACTGAAAAAATCATGTTCAAGGTCGTGTTGAGGGAGCGGGCTATGTTT
TACGTGTTAGAAGAAGCCCTAAACAGGccttcgcctagttcgaaaaTCTA
GGATGAAGACCAAAAAATGCCTAGTCTAGCTGTCCTTTCTGACTAGGATT
AGATATATTAGGAATGTCAACATCATTTCGTCATAAACCtctataattct
atgaatataATATGACTTATCAACTAAAACTTGTGGATCGAACACACATT
TAATGAACAAATCAGTCTTCTcgtactttaaaaaaaaacaaaaaaataac
ttgTCTCTTACATGCACGGTAATTTCTATATCAAGCCTTCTCTATCCGAT
TCCAGGGTCATTTCTACATCAAGATGGACATGGTCGATGAATCAAATCAC
AAAAACAGAGTTGTGTGCGTCAAAGGGTATACTGATGTCAAAACTTCGTA
AATTAAAGAAATAACGAAagataattcttgaaaaacgaAATAAC Coding sequence (CDS) from alignment at scaffold_425:219523..221466+ >TCONS_00064845 ID=TCONS_00064845|Name=TCONS_00064845|organism=Clytia hemisphaerica|type=CDS|length=2112bp|location=Sequence derived from alignment at scaffold_425:219523..221466+ (Clytia hemisphaerica)
ATGTCGTGCGAACTTTTGAAGATTGTTCTTTTTCTTGGACTTGCTACATT
TTCCCAATGTGTTTTCAAGCTTGAAAATTGTGACAAGACAGCTCCGGTGC
AATACACCCTTCTGAAAGCACCTGATTACTTGGTCCTTCGCAATAATGGA
AACATCAAATTGTCAGCATCGATCAAAGTCAAATCAAGTCAATCGTTACC
AAGACATTTAAGGATGAAGATTTCACTTTCCAAAAGAATTGGTTTTGTCT
GGATTGACATCCCTTGTGTCGGATGTGACATCAAAGTCGACACATTCACC
ATCCCAGAGATCCGAACCATTCGAAGAGtatgttcacaaaattgtactCT
AACAGCTGAAGATATTGTTTTTCCGTTATCTTCTCATATCGAAGAATACA
TTCCTGGTATTTTCCCAAATATGCTTCTTGAGGGTCATTTCTACATCAAG
ATGGACATGGTCGATGAATCAAATCACAAAAACAGAGTTGTGTGCGTCAA
AGGGTATACTGATGTCAAAACTTCGTAAATGTCGTGCGAACTTTTGAAGA
TTGTTCTTTTTCTTGGACTTGCTACATTTTCCCAATGTGTTTTCAAGCTT
GAAAATTGTGACAAGACAGCTCCGGTGCAATACACCCTTCTGAAAGCACC
TGATTACTTGGTCCTTCGCAATAATGGAAACATCAAATTGTCAGCATCGA
TCAAAGTCAAATCAAGTCAATCGTTACCAAGACATTTAAGGATGAAGATT
TCACTTTCCAAAAGAATTGGTTTTGTCTGGATTGACATCCCTTGTGTCGG
ATGTGACATCAAAGTCGACACATTCACCATCCCAGAGATCCGAACCATTC
GAAGAGtatgttcacaaaattgtactCTAACAGCTGAAGATATTGTTTTT
CCGTTATCTTCTCATATCGAAGAATACATTCCTGGTATTTTCCCAAATAT
GCTTCTTGAGGGTCATTTCTACATCAAGATGGACATGGTCGATGAATCAA
ATCACAAAAACAGAGTTGTGTGCGTCAAAGGGTATACTGATGTCAAAACT
TCGTAAATGTCGTGCGAACTTTTGAAGATTGTTCTTTTTCTTGGACTTGC
TACATTTTCCCAATGTGTTTTCAAGCTTGAAAATTGTGACAAGACAGCTC
CGGTGCAATACACCCTTCTGAAAGCACCTGATTACTTGGTCCTTCGCAAT
AATGGAAACATCAAATTGTCAGCATCGATCAAAGTCAAATCAAGTCAATC
GTTACCAAGACATTTAAGGATGAAGATTTCACTTTCCAAAAGAATTGGTT
TTGTCTGGATTGACATCCCTTGTGTCGGATGTGACATCAAAGTCGACACA
TTCACCATCCCAGAGATCCGAACCATTCGAAGAGtatgttcacaaaattg
tactCTAACAGCTGAAGATATTGTTTTTCCGTTATCTTCTCATATCGAAG
AATACATTCCTGGTATTTTCCCAAATATGCTTCTTGAGGGTCATTTCTAC
ATCAAGATGGACATGGTCGATGAATCAAATCACAAAAACAGAGTTGTGTG
CGTCAAAGGGTATACTGATGTCAAAACTTCGTAAATGTCGTGCGAACTTT
TGAAGATTGTTCTTTTTCTTGGACTTGCTACATTTTCCCAATGTGTTTTC
AAGCTTGAAAATTGTGACAAGACAGCTCCGGTGCAATACACCCTTCTGAA
AGCACCTGATTACTTGGTCCTTCGCAATAATGGAAACATCAAATTGTCAG
CATCGATCAAAGTCAAATCAAGTCAATCGTTACCAAGACATTTAAGGATG
AAGATTTCACTTTCCAAAAGAATTGGTTTTGTCTGGATTGACATCCCTTG
TGTCGGATGTGACATCAAAGTCGACACATTCACCATCCCAGAGATCCGAA
CCATTCGAAGAGtatgttcacaaaattgtactCTAACAGCTGAAGATATT
GTTTTTCCGTTATCTTCTCATATCGAAGAATACATTCCTGGTATTTTCCC
AAATATGCTTCTTGAGGGTCATTTCTACATCAAGATGGACATGGTCGATG
AATCAAATCACAAAAACAGAGTTGTGTGCGTCAAAGGGTATACTGATGTC
AAAACTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064845-exon-scaffold_425-1491911889:219523..219671 | TCONS_00064845-exon-scaffold_425-1491911889:219523..219671 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1510915933:219523..219671 | TCONS_00064845-exon-scaffold_425-1510915933:219523..219671 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1575043694:219523..219671 | TCONS_00064845-exon-scaffold_425-1575043694:219523..219671 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1491911889:220093..220285 | TCONS_00064845-exon-scaffold_425-1491911889:220093..220285 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1510915933:220093..220285 | TCONS_00064845-exon-scaffold_425-1510915933:220093..220285 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1575043694:220093..220285 | TCONS_00064845-exon-scaffold_425-1575043694:220093..220285 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1491911889:220632..220788 | TCONS_00064845-exon-scaffold_425-1491911889:220632..220788 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1510915933:220632..220788 | TCONS_00064845-exon-scaffold_425-1510915933:220632..220788 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1575043694:220632..220788 | TCONS_00064845-exon-scaffold_425-1575043694:220632..220788 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1491911889:221328..221466 | TCONS_00064845-exon-scaffold_425-1491911889:221328..221466 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1510915933:221328..221466 | TCONS_00064845-exon-scaffold_425-1510915933:221328..221466 | Clytia hemisphaerica | exon |
| TCONS_00064845-exon-scaffold_425-1575043694:221328..221466 | TCONS_00064845-exon-scaffold_425-1575043694:221328..221466 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:219523..221466 + |
Blast
The following BLAST results are available for this feature:
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