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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064861 ID=TCONS_00064861|Name=TCONS_00064861|organism=Clytia hemisphaerica|type=transcript|length=1555bp
GTTGAAAATAGTTTGATCTTATATATGCATGCATCAGTCAGAGAAAAACT
TTTGGTCGTATCATAAGGACGAGTAATTGATCTTTCTTAACCATTTTGGA
AAAACTATCCTCAAAGGCTTTTTTGAAATCTCTCTTTCCGAATTTGAAAG
AGACAAGATGCTTTCGAGcaagttttataaaaatatcatGGCTTCGATGT
CAATGCAAAGAAAATATCAGGTCATACTCGAGATAGCATGCGAACCGAAG
GACGCTTTATCGTGGAACGGGAAAACGAAAGACGGAACGCGAAATTTCTC
GACGGATGACGGATACGTTGACGTCGATATTCCATCAGATGACGAATATG
AGAGCGAAAATGAACTGAATTTCTCGTTAATCGACCCGAATATATTACGA
GCGAGAATTATTCGTCATTTACCGAGTGAAGTAACGACAAAGTACGGTTC
ACCGATCGTTTTAACTTGTTTAACGACTGTTTTATTTCCCGTTGATATCG
AATGGACTCTAAACGGGACCATTATTGAACCGACGATCGATGGTCGGATA
TATTTTTCCGACGACCGACGACAATtattcattttgtatttaaCGACTGA
TGAACAAGGAACAATAGAAATGGTCGCTAGAAATCGTTTCGGAAGCGAGA
AGTCAATTTGTCAATTGAAAGTGCAGAACAGGACTAGAGCGGTCACTGAA
CCTCTATTAAGCCTTCCGAACACTCTGGAACTGAGATgatcattttatta
tttaacATACAAACCTTTTTGTCTTTTATCGTTAGGTTTCCAAGGCAAAG
TTTCCTAAATTTAGATATGGTAATTCCCTTACTAAATCAAACACATCCAT
CATTAAGTATTCTACTGGTGAAAAGGAACTGGGTTTGAGATTACCAGGGT
TTGAGATATCAAAAGTCTGAATATCATTTTCTTGATGCGCTAACTGATAC
AAGGCTTTGGCATTATCACTCAATTTCATGGTGCTGCATTCAATTCATCT
TGAAGCCAGTCTCTCTCGACGAGAGAATGTTTTATAGCAAGTGAGTTTGT
TTGAATTTCTCCGCTCTCTGTCTGATATAGTTTTAATTTCTTTACTTTCC
AACTCAACCTTAAATCCTAAGGTGTTGAGCAACCAAACAACCTCTAAACT
TATTAGGACTGCAATTTGAAAATAAGGTTCAAACCAAGGTTAACATAAGT
ATACATCAGAGCTGTGTTCGTTTTCTAAAAGTAACAACCTCctgaatttt
taatttattttttataaatttgtacATAATATCACTAatgtatctatttt
ttttttaatttactaAAACTGAAAGTTAAATGATCTTTAAAGAACTGGAA
AAATTTCTCAATGTGACATGACACCTCTGTCCCAAAGGCCCAATGGAACC
TTTTCcctcaatggggatgaaattttgaaatcccaatggggataaaaatt
ctactGATTGAAGTCAAAAACTCTGGTGTCAATGGCTTTGGAGTACACAA
TTCTTCCTTCCTATTTAAAATGCGTCGTGGGTAAAATCATAAAGCACCAA
ATTTC Run BLAST on NCBI transcript from alignment at scaffold_425:374357..377144+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064861 ID=TCONS_00064861|Name=TCONS_00064861|organism=Clytia hemisphaerica|type=transcript|length=2788bp|location=Sequence derived from alignment at scaffold_425:374357..377144+ (Clytia hemisphaerica)
GTTGAAAATAGTTTGATCTTATATATGCATGCATCAGTCAGAGAAAAACT
TTTGGTCGTATCATAAGGACGAGTAATTGATCTTTCTTAACCATTTTGGA
AAAACTATCCTCAAAGGCTTTTTTGAAATCTCTCTTTCCGAATTTGAAAG
AGACAAGATGCTTTCGAGcaagttttataaaaatatcatGGCTTCGATGT
CAATGCAAAGAAAATATCAGGTCATACTCGAGATAGGTAAGTATTGAATC
CAGCTTTATTCAACAATTTGGCTGTGTCatcaattttgcaattttggagG
AGGGTCAGACATCGTAATAATGGCGTAAAATGACCAGCTTAGTAGTTGAT
TTTTTGACTTAATTTGTGCAATTAGCGTTTTGATTACTCTTGATTGCCAT
AGTTAAATGGCAATGAAACATCCGTTTTCTTTGCGAGAACATCCGAAATT
TTAAAGCCTTTGgttgctcttaactttttgagttttaagcttaaaaatgt
tcttaacatgttcttgtttTCACCATTCTGTAAGTATTTGCCATTTTCCT
AAGagattgggtgttttagagtccacagaGAAAGCTTATATTATATTCAT
gtgtagtttgttcttgtatATTACCATGGTTAAACGACGATAAAACATCC
GATAAGTTTTTACGTCACAAAGAATAAAAATCGTAGTTTGAATTTGTTAC
ATGGTTGGCAGGTGGTGAACTTCTGAGAGACATCGTTGATTCCTGCCTCT
ATAGTCTCTTTGAGATCCCTTATCATGTTGGCAAGGGCGACTATAGGAAT
GAATATAATATTCTTTATAAGAAGTCTGAGAAAAACTTGTTGGTTGCGTG
TTTAAAATGGTATACTTTCGAGCCAAATTCTAAAGTTTAATggattaaaa
agaaaggttggTGATTTCTTGCACTttatattttgaagatttgtcTATTC
AAGAAACCCGTTGTGTTGTTTATAAGAATAGTTAGAAATATTGTAAACAA
ACAGCCAGTTGAATTACATAAGATTGACAGGTTGATGACAAGGCCCTTCC
ATTATTCATTCAAATAGATTTTGTTGTATATTGGATACAGTAACCTTGGT
TTTctctccatcgcagtgttcATTCTATTTAGTTTGCCCTGGAGAGCTTT
GTTGGAGAGATTACAGAAACTACGATGGAGCTATGTGGTATAATTAGGTT
ATAAGTTGCgaattttatttacttttccgTCATTTATCGTGTGATCAAAG
GCTTTAATTTGTTTTCTTAATCTGGGACTTTTTGACACAAGACCTTACTT
GCAGTACTAGAGTGGTATTGGTGCGTCTGATTAACTAAAGTCAGAAAAAG
TGATCCCAGCTAACTTCGAGAGCAGAAAATTTGTGAAGAAGGACTACATA
AATAAGAAGAAATGGGGAGAAGTTTacaacaacagaaattcaaCCATTTC
GTTTCTCGTTTTCTTTCAGCATGCGAACCGAAGGACGCTTTATCGTGGAA
CGGGAAAACGAAAGACGGAACGCGAAATTTCTCGACGGATGACGGATACG
TTGACGTCGATATTCCATCAGATGACGAATATGAGAGCGAAAATGAACTG
AATTTCTCGTTAATCGACCCGAATATATTACGAGCGAGAATTATTCGTCA
TTTACCGAGTGAAGTAACGACAAAGTACGGTTCACCGATCGTTTTAACTT
GTTTAACGACTGTTTTATTTCCCGTTGATATCGAATGGACTCTAAACGGG
ACCATTATTGAACCGACGATCGATGGTCGGATATATTTTTCCGACGACCG
ACGACAATtattcattttgtatttaaCGACTGATGAACAAGGAACAATAG
AAATGGTCGCTAGAAATCGTTTCGGAAGCGAGAAGTCAATTTGTCAATTG
AAAGTGCAGAACAGGACTAGAGCGGTCACTGAACCTCTATTAAGCCTTCC
GAACACTCTGGAACTGAGATgatcattttattatttaacATACAAACCTT
TTTGTCTTTTATCGTTAGGTTTCCAAGGCAAAGTTTCCTAAATTTAGATA
TGGTAATTCCCTTACTAAATCAAACACATCCATCATTAAGTATTCTACTG
GTGAAAAGGAACTGGGTTTGAGATTACCAGGGTTTGAGATATCAAAAGTC
TGAATATCATTTTCTTGATGCGCTAACTGATACAAGGCTTTGGCATTATC
ACTCAATTTCATGGTGCTGCATTCAATTCATCTTGAAGCCAGTCTCTCTC
GACGAGAGAATGTTTTATAGCAAGTGAGTTTGTTTGAATTTCTCCGCTCT
CTGTCTGATATAGTTTTAATTTCTTTACTTTCCAACTCAACCTTAAATCC
TAAGGTGTTGAGCAACCAAACAACCTCTAAACTTATTAGGACTGCAATTT
GAAAATAAGGTTCAAACCAAGGTTAACATAAGTATACATCAGAGCTGTGT
TCGTTTTCTAAAAGTAACAACCTCctgaatttttaatttattttttataa
atttgtacATAATATCACTAatgtatctattttttttttaatttactaAA
ACTGAAAGTTAAATGATCTTTAAAGAACTGGAAAAATTTCTCAATGTGAC
ATGACACCTCTGTCCCAAAGGCCCAATGGAACCTTTTCcctcaatgggga
tgaaattttgaaatcccaatggggataaaaattctactGATTGAAGTCAA
AAACTCTGGTGTCAATGGCTTTGGAGTACACAATTCTTCCTTCCTATTTA
AAATGCGTCGTGGGTAAAATCATAAAGCACCAAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064861-exon-scaffold_425-1491911889:374357..374592 | TCONS_00064861-exon-scaffold_425-1491911889:374357..374592 | Clytia hemisphaerica | exon |
| TCONS_00064861-exon-scaffold_425-1510915933:374357..374592 | TCONS_00064861-exon-scaffold_425-1510915933:374357..374592 | Clytia hemisphaerica | exon |
| TCONS_00064861-exon-scaffold_425-1575043694:374357..374592 | TCONS_00064861-exon-scaffold_425-1575043694:374357..374592 | Clytia hemisphaerica | exon |
| TCONS_00064861-exon-scaffold_425-1491911889:375826..377144 | TCONS_00064861-exon-scaffold_425-1491911889:375826..377144 | Clytia hemisphaerica | exon |
| TCONS_00064861-exon-scaffold_425-1510915933:375826..377144 | TCONS_00064861-exon-scaffold_425-1510915933:375826..377144 | Clytia hemisphaerica | exon |
| TCONS_00064861-exon-scaffold_425-1575043694:375826..377144 | TCONS_00064861-exon-scaffold_425-1575043694:375826..377144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:374357..377144 + |
Blast
The following BLAST results are available for this feature:
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