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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064864 ID=TCONS_00064864|Name=TCONS_00064864|organism=Clytia hemisphaerica|type=transcript|length=795bp
gataaatcaactgaaaatcTCCTTTTACTGGAgggaaatattttaaaaac
attgtaGAGTTGGTTTATTTTGTGGtgcttgtttttatgtttagtttAAC
AAGCATTTACGTTGAAAAGTATATTAAGAACTAAATTTGTTTTAGAGAAC
TAAAGTTTGGGTCTAAATTTACCAGAGTTCGAAACACTTTTAAATGCAAG
CCCGCATTCGGTGTAATTCAGCTGTCTTAGATCCGAACCTAATAACCCCG
TTACATCAGAACATTTAACATGGTCCTTCTAAACCGGCTCTTAGCCGTAA
CGTTGATGGCCATGCAGGTCCATAGTGAGGACCCCGAGGAATGTGAGCAG
AACTTTGAATTCAAAGCAAGCGTGTGTAATAATACGAATGGCGGCAAGCC
TCAAGGCTGTTTCTATGGACCACCAAAGAATATATCACATTGTGAAGATC
TATCAATTTCTACAATCATCAATGAGCCTTATACTACATTTTTCTTCCCA
GAATTTATGGATATCCTTATAATAAACCAATGTTGTGGTTGCCTCAACTT
CACTCAAATATACCGGACAACCTACAACAATACAACAGAATTCCTTCAAC
GGAAAAACAGCGGAACTAGACCCGTAGAACGAATCATATATCCGGTCTTA
GGTGATCCTTCACAGAAAAAGTATTATGGAATGTATTTTGTACCGATGTA
TTATCTGGAAGAAGGACTTCTTATCACtttgaagaaaacttctggTGAAA
TTGTCACTGATCTGTTGTTTCGAATCGCTGGCTTGTGGCCACTGT Run BLAST on NCBI protein sequence of TCONS_00064864-protein >TCONS_00064864-protein ID=TCONS_00064864-protein|Name=TCONS_00064864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MVLLNRLLAVTLMAMQVHSEDPEECEQNFEFKASVCNNTNGGKPQGCFYG
PPKNISHCEDLSISTIINEPYTTFFFPEFMDILIINQCCGCLNFTQIYRT
TYNNTTEFLQRKNSGTRPVERIIYPVLGDPSQKKYYGMYFVPMYYLEEGL
LITLKKTSGEIVTDLLFRIAGLWPL Run BLAST on NCBI transcript from alignment at scaffold_425:378488..379909+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064864 ID=TCONS_00064864|Name=TCONS_00064864|organism=Clytia hemisphaerica|type=transcript|length=1422bp|location=Sequence derived from alignment at scaffold_425:378488..379909+ (Clytia hemisphaerica)
gataaatcaactgaaaatcTCCTTTTACTGGAgggaaatattttaaaaac
attgtaGAGTTGGTTTATTTTGTGGtgcttgtttttatgtttagtttAAC
AAGCATTTACGTTGAAAAGTATATTAAGAACTAAATTTGTTTTAGAGAAC
TAAAGTTTGGGTCTAAATTTACCAGAGTTCGAAACACTTTTAAATGCAAG
CCCGCATTCGGTGTAATTCAGCTGTCTTAGATCCGAACCTAATAACCCCG
TTACATCAGAACATTTAACATGGTCCTTCTAAACCGGCTCTTAGCCGTAA
CGTTGATGGCCATGCAGGTCCATAGTGAGGACCCCGAGGAATGTGAGCAG
AACTTTGAATTCAAAGCAAGCGTGTGTAATAATACGAATGGCGGCAAGCC
TCAAGGCTGTTTCTATGGACCACCAAAGAATATATCACATTGTGAAGATC
TATCAATTTCTACAATCATCAATGAGCCTTATACTACATTTTTCTTCCCA
GGTAAGCAGAGTAAATATGGAAGTATCTGTTAATTATATAGTAAGACTTT
TATCACTTTTATCTCTTTAGAAAGTGAAATAAAGTAAATCCGTGACATCT
TTCTCGAAGGAGAGTTTCAGGGGCTACCTTATTTTGCTATTCCGTCGAAT
TCCGTAAAACAGTCCAAATAATAAAACAGAAATCTCCataacactgaaaa
tttttttgtgaagTTCTAGATTTTCTACCTACTAATTTGACCTTTTTTCT
TATTCCGATATTCCGAGTGATTTTCTTGCTAAATTTTGCTTCCCCTGACT
CAGTTTCCAGCAATAAAGTTTATTTCtgaaataatattcaaattttcttg
gaaaaaggCAGATTCCACTTCTACCACCAAATTTGATGAATGCACCTTAT
TCAAATGGCTCCAAAATTCTCTCCAGACTATCAAGACATATTTAAGGGAT
TACAAAGTTACAGTTTATTGCAAAAGTTAGGTCCATCTAACTTTAGACAT
AGAGCTTGACGTCAATCGTACTTTACCCGACAGAATGTCAAAAATACCGG
CCTGTGGTAACTATGAGACTAAATGAAAACACTCCCATCCACTGAGCCCA
CGtgaatttcttcatttctttaTTGTAGAATTTATGGATATCCTTATAAT
AAACCAATGTTGTGGTTGCCTCAACTTCACTCAAATATACCGGACAACCT
ACAACAATACAACAGAATTCCTTCAACGGAAAAACAGCGGAACTAGACCC
GTAGAACGAATCATATATCCGGTCTTAGGTGATCCTTCACAGAAAAAGTA
TTATGGAATGTATTTTGTACCGATGTATTATCTGGAAGAAGGACTTCTTA
TCACtttgaagaaaacttctggTGAAATTGTCACTGATCTGTTGTTTCGA
ATCGCTGGCTTGTGGCCACTGT Coding sequence (CDS) from alignment at scaffold_425:378488..379909+ >TCONS_00064864 ID=TCONS_00064864|Name=TCONS_00064864|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_425:378488..379909+ (Clytia hemisphaerica)
ATGGTCCTTCTAAACCGGCTCTTAGCCGTAACGTTGATGGCCATGCAGGT
CCATAGTGAGGACCCCGAGGAATGTGAGCAGAACTTTGAATTCAAAGCAA
GCGTGTGTAATAATACGAATGGCGGCAAGCCTCAAGGCTGTTTCTATGGA
CCACCAAAGAATATATCACATTGTGAAGATCTATCAATTTCTACAATCAT
CAATGAGCCTTATACTACATTTTTCTTCCCAGAATTTATGGATATCCTTA
TAATAAACCAATGTTGTGGTTGCCTCAACTTCACTCAAATATACCGGACA
ACCTACAACAATACAACAGAATTCCTTCAACGGAAAAACAGCGGAACTAG
ACCCGTAGAACGAATCATATATCCGGTCTTAGGTGATCCTTCACAGAAAA
AGTATTATGGAATGTATTTTGTACCGATGTATTATCTGGAAGAAGGACTT
CTTATCACtttgaagaaaacttctggTGAAATTGTCACTGATCTGTTGTT
TCGAATCGCTGGCTTGTGGCCACTGATGGTCCTTCTAAACCGGCTCTTAG
CCGTAACGTTGATGGCCATGCAGGTCCATAGTGAGGACCCCGAGGAATGT
GAGCAGAACTTTGAATTCAAAGCAAGCGTGTGTAATAATACGAATGGCGG
CAAGCCTCAAGGCTGTTTCTATGGACCACCAAAGAATATATCACATTGTG
AAGATCTATCAATTTCTACAATCATCAATGAGCCTTATACTACATTTTTC
TTCCCAGAATTTATGGATATCCTTATAATAAACCAATGTTGTGGTTGCCT
CAACTTCACTCAAATATACCGGACAACCTACAACAATACAACAGAATTCC
TTCAACGGAAAAACAGCGGAACTAGACCCGTAGAACGAATCATATATCCG
GTCTTAGGTGATCCTTCACAGAAAAAGTATTATGGAATGTATTTTGTACC
GATGTATTATCTGGAAGAAGGACTTCTTATCACtttgaagaaaacttctg
gTGAAATTGTCACTGATCTGTTGTTTCGAATCGCTGGCTTGTGGCCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064864-exon-scaffold_425-1491911889:378488..378988 | TCONS_00064864-exon-scaffold_425-1491911889:378488..378988 | Clytia hemisphaerica | exon |
| TCONS_00064864-exon-scaffold_425-1510915933:378488..378988 | TCONS_00064864-exon-scaffold_425-1510915933:378488..378988 | Clytia hemisphaerica | exon |
| TCONS_00064864-exon-scaffold_425-1575043694:378488..378988 | TCONS_00064864-exon-scaffold_425-1575043694:378488..378988 | Clytia hemisphaerica | exon |
| TCONS_00064864-exon-scaffold_425-1491911889:379616..379909 | TCONS_00064864-exon-scaffold_425-1491911889:379616..379909 | Clytia hemisphaerica | exon |
| TCONS_00064864-exon-scaffold_425-1510915933:379616..379909 | TCONS_00064864-exon-scaffold_425-1510915933:379616..379909 | Clytia hemisphaerica | exon |
| TCONS_00064864-exon-scaffold_425-1575043694:379616..379909 | TCONS_00064864-exon-scaffold_425-1575043694:379616..379909 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:378488..379909 + |
Blast
The following BLAST results are available for this feature:
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