TCONS_00064865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064865
Unique NameTCONS_00064865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064865 ID=TCONS_00064865|Name=TCONS_00064865|organism=Clytia hemisphaerica|type=transcript|length=860bp
NGACAAAGTACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTCTGGA
TCATCGGTGGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgac
gtcatcaatcacgTGACTTTACCCAAACAAGCTACCCTCTCTGGAAAaGT
CGGTATTTTAGAAGGTCGTTTGTTTGAAGCTCAAATGATCACGAGGAGTG
GTGGAACTTTCCACGAGATGTCAACAATAGAACATCTATTGGATAGTCTG
GAGAACGACAAAATATCAGGGATACTCTTGGACTATAtaacaaaaaatgt
tctttttcctGAAATCATCACCAAGACAAAGCGAGATAAAAATCTATACC
GTTCAACTTCCTTTCGATCAACTGCTCATAAATCTTACACGTATGGCGCC
TTATTCAGAGAAGAAAGGGACGCCAATTTCTTCAGAAATGTGATTTATCA
AACGGCAGATGGCGTGGAGATTTGCTTCTCCAGAGCTTTTAGGGACAAAA
TGGAATATACTCCACTCGAGTTGTTTTCACCAGATTCGAAAATCTTCCAA
CATTCGTGTTTCGTTTTCTTCGCTATTCTCGTTTGTATCGGAATGTTCGG
TATTTTGTACGAATGTCGccggaagaagaagaaggaagcGGCAATACCCG
AATTGCAAAGAATGAAGAGCGTCAAAGAAGGCCCCGCTATGTGTCGATAA
TAAATTGGgtttctattttcaaaatatatacaTCACTGCTATTATAATAC
TTTCGTTAAAAATTTCTGTAGAATATATTTAATTCCGAAAAAATATCTTT
TGTAAATCTGTaattgtaaaaaaaactttctgatCATTATATAATAAATT
TAGTCAAGCA
Run BLAST on NCBI

protein sequence of TCONS_00064865-protein

>TCONS_00064865-protein ID=TCONS_00064865-protein|Name=TCONS_00064865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
DKVPITWVGRLFSSFWIIGGITLCSILTASMTDVINHVTLPKQATLSGKV
GILEGRLFEAQMITRSGGTFHEMSTIEHLLDSLENDKISGILLDYITKNV
LFPEIITKTKRDKNLYRSTSFRSTAHKSYTYGALFREERDANFFRNVIYQ
TADGVEICFSRAFRDKMEYTPLELFSPDSKIFQHSCFVFFAILVCIGMFG
ILYECRRKKKKEAAIPELQRMKSVKEGPAMCR
Run BLAST on NCBI

transcript from alignment at scaffold_425:382525..384807+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064865 ID=TCONS_00064865|Name=TCONS_00064865|organism=Clytia hemisphaerica|type=transcript|length=2283bp|location=Sequence derived from alignment at scaffold_425:382525..384807+ (Clytia hemisphaerica)
NGACAAAGTACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTCTGGA
TCATCGGTGGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgac
gtcatcaatcacgTGACTTTACCCAAACAAGCTACCCTCTCTGGAAAagt
atttttcttaatttttttttatttaagatcTCAGTCAACTGGTATTGTGC
ATTCATATACACGGCGGCGCTCTTAATTTCCGTCAATACTTAAAGAAATC
ATAAACAATTTTTAAGAGAAATTAACTCGATTGATAATTTGTCCATATTT
CTTTCAGGTCGGTATTTTAGAAGGTCGTTTGTTTGAAGCTCAAATGATCA
CGAGGAGTGGTGGAACTTTCCACGAGAGTAAGTTATATTTAGACTTTTGT
GACGGAGATTTTCTATGTAAGAAAAGTATAAAGATAAAGATTTTAGCCAT
GATTACTTTGTGTAGATAGCTATCCaaaaggagccttcgggtcgacTTCC
ACTGCGGTTGCAGACTTTAAAATTTAGCTTAAAAATAAAGGATTTTTGTA
AAGATCAGTAGACCAGTGAAGtataattttatgaaataatatAACAACGA
AAAGGTTTAACAACTCCTGTATTACGTACGTTcgattttcattattcatt
cTGTTTTAGTGTCAACAATAGAACATCTATTGGATAGTCTGGAGAACGAC
AAAATATCAGGTACGTTTCAGCTAAAACGGTTAtatacaatacacctttt
cgactgtagccgtcaattgccgtgcgggcattttttaccgccctaaaacc
gtcccagtctttttttcgcaccgaaagacaataaaaaaaagtgtaaaaaa
aggattggatcgagtttagggtggtaaaaaatgcccgcgcggcaattggc
agctacggtcgaaaaggtgtattctttTTTGGCCTAAATCTTGAATAGTG
GTAACGTCTTGTCTTCATTAAATTACCTAATTACATTCGCAAATTCCAGG
GCAAACTGTCACGATAACTGAGGGTTGATTTTAGATTTGACTACAAGTTT
CAGAACCCGGAAACCTCGAGCTCCCAGGTCATTTATTGTACAATTCAGTC
CAGCAACAAGAAGTCCCTATACATAGCTATGTGACAATTTAGTATTCGTC
TCTTGTATTTCAGGGATACTCTTGGACTATAtaacaaaaaatgttctttt
tcctGAAATCATCACCAAGACAAAGCGAGATAAAAATCTATACCGTTCAA
CTTCCTTTCGATCAACTGCTCATAAATCTTACACGTATGGCGCCTTATTC
AGAGAAGAAAGGGACGCCAATTTCTTCAGAAATGTGATTTATCAAACGGC
AGATGGCGTGGAGATTTGCTTCTCCAGAGCTTTTAGGGACAAAGTAacac
attttcaagattttttcggAAACTTTTTGCACATGAAAGTGAAATACTTG
TCTGATTTTACAGTATTATTTTTATCCTCTGACCTACAATCCCCCAACAA
ATATCTTGAGATTTCTAAACATTTTTGGAAGATAAAAATCCGTCCCCCGG
ACCCCACTGTCAGTGTTGAGTCCGGAAATGGCCGAGAACTCAACGCTGAC
AGTGGGGGAAAGGGGGACCATGTGAAGTGTCTCAGATATAAATTGGGGGA
TTgtagccaaaaaaattttccaatttttcttgaaacttAGAACCCTAAAA
TTTATCCtcgatttttcaagaattacgCTCGCCATTCACAAATCTAGAAG
ATTCTTAAACTCAAGTGGACGATTAAGCGATGGGAGGTTATAGAAAACAT
TGgtgaataaaaagtaaaatcaccCTTGATATTTTTTTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATTTTTTTTAGATGGAATATACTCCACTCGAGTTGTTTT
CACCAGATTCGAAAATCTTCCAACATTCGTGTTTCGTTTTCTTCGCTATT
CTCGTTTGTATCGGAATGTTCGGTATTTTGTACGAATGTCGccggaagaa
gaagaaggaagcGGCAATACCCGAATTGCAAAGAATGAAGAGCGTCAAAG
AAGGCCCCGCTATGTGTCGATAATAAATTGGgtttctattttcaaaatat
atacaTCACTGCTATTATAATACTTTCGTTAAAAATTTCTGTAGAATATA
TTTAATTCCGAAAAAATATCTTTTGTAAATCTGTaattgtaaaaaaaact
ttctgatCATTATATAATAAATTTAGTCAAGCA

Coding sequence (CDS) from alignment at scaffold_425:382525..384807+

>TCONS_00064865 ID=TCONS_00064865|Name=TCONS_00064865|organism=Clytia hemisphaerica|type=CDS|length=3495bp|location=Sequence derived from alignment at scaffold_425:382525..384807+ (Clytia hemisphaerica)
GACAAAGTACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTCTGGAT
CATCGGTGGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgacg
tcatcaatcacgTGACTTTACCCAAACAAGCTACCCTCTCTGGAAAaGTC
GGTATTTTAGAAGGTCGTTTGTTTGAAGCTCAAATGATCACGAGGAGTGG
TGGAACTTTCCACGAGATGTCAACAATAGAACATCTATTGGATAGTCTGG
AGAACGACAAAATATCAGGGATACTCTTGGACTATAtaacaaaaaatgtt
ctttttcctGAAATCATCACCAAGACAAAGCGAGATAAAAATCTATACCG
TTCAACTTCCTTTCGATCAACTGCTCATAAATCTTACACGTATGGCGCCT
TATTCAGAGAAGAAAGGGACGCCAATTTCTTCAGAAATGTGATTTATCAA
ACGGCAGATGGCGTGGAGATTTGCTTCTCCAGAGCTTTTAGGGACAAAAT
GGAATATACTCCACTCGAGTTGTTTTCACCAGATTCGAAAATCTTCCAAC
ATTCGTGTTTCGTTTTCTTCGCTATTCTCGTTTGTATCGGAATGTTCGGT
ATTTTGTACGAATGTCGccggaagaagaagaaggaagcGGCAATACCCGA
ATTGCAAAGAATGAAGAGCGTCAAAGAAGGCCCCGCTATGTGTCGATAAG
ACAAAGTACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTCTGGATC
ATCGGTGGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgacgt
catcaatcacgTGACTTTACCCAAACAAGCTACCCTCTCTGGAAAaGTCG
GTATTTTAGAAGGTCGTTTGTTTGAAGCTCAAATGATCACGAGGAGTGGT
GGAACTTTCCACGAGATGTCAACAATAGAACATCTATTGGATAGTCTGGA
GAACGACAAAATATCAGGGATACTCTTGGACTATAtaacaaaaaatgttc
tttttcctGAAATCATCACCAAGACAAAGCGAGATAAAAATCTATACCGT
TCAACTTCCTTTCGATCAACTGCTCATAAATCTTACACGTATGGCGCCTT
ATTCAGAGAAGAAAGGGACGCCAATTTCTTCAGAAATGTGATTTATCAAA
CGGCAGATGGCGTGGAGATTTGCTTCTCCAGAGCTTTTAGGGACAAAATG
GAATATACTCCACTCGAGTTGTTTTCACCAGATTCGAAAATCTTCCAACA
TTCGTGTTTCGTTTTCTTCGCTATTCTCGTTTGTATCGGAATGTTCGGTA
TTTTGTACGAATGTCGccggaagaagaagaaggaagcGGCAATACCCGAA
TTGCAAAGAATGAAGAGCGTCAAAGAAGGCCCCGCTATGTGTCGATAAGA
CAAAGTACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTCTGGATCA
TCGGTGGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgacgtc
atcaatcacgTGACTTTACCCAAACAAGCTACCCTCTCTGGAAAaGTCGG
TATTTTAGAAGGTCGTTTGTTTGAAGCTCAAATGATCACGAGGAGTGGTG
GAACTTTCCACGAGATGTCAACAATAGAACATCTATTGGATAGTCTGGAG
AACGACAAAATATCAGGGATACTCTTGGACTATAtaacaaaaaatgttct
ttttcctGAAATCATCACCAAGACAAAGCGAGATAAAAATCTATACCGTT
CAACTTCCTTTCGATCAACTGCTCATAAATCTTACACGTATGGCGCCTTA
TTCAGAGAAGAAAGGGACGCCAATTTCTTCAGAAATGTGATTTATCAAAC
GGCAGATGGCGTGGAGATTTGCTTCTCCAGAGCTTTTAGGGACAAAATGG
AATATACTCCACTCGAGTTGTTTTCACCAGATTCGAAAATCTTCCAACAT
TCGTGTTTCGTTTTCTTCGCTATTCTCGTTTGTATCGGAATGTTCGGTAT
TTTGTACGAATGTCGccggaagaagaagaaggaagcGGCAATACCCGAAT
TGCAAAGAATGAAGAGCGTCAAAGAAGGCCCCGCTATGTGTCGATAAGAC
AAAGTACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTCTGGATCAT
CGGTGGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgacgtca
tcaatcacgTGACTTTACCCAAACAAGCTACCCTCTCTGGAAAaGTCGGT
ATTTTAGAAGGTCGTTTGTTTGAAGCTCAAATGATCACGAGGAGTGGTGG
AACTTTCCACGAGATGTCAACAATAGAACATCTATTGGATAGTCTGGAGA
ACGACAAAATATCAGGGATACTCTTGGACTATAtaacaaaaaatgttctt
tttcctGAAATCATCACCAAGACAAAGCGAGATAAAAATCTATACCGTTC
AACTTCCTTTCGATCAACTGCTCATAAATCTTACACGTATGGCGCCTTAT
TCAGAGAAGAAAGGGACGCCAATTTCTTCAGAAATGTGATTTATCAAACG
GCAGATGGCGTGGAGATTTGCTTCTCCAGAGCTTTTAGGGACAAAATGGA
ATATACTCCACTCGAGTTGTTTTCACCAGATTCGAAAATCTTCCAACATT
CGTGTTTCGTTTTCTTCGCTATTCTCGTTTGTATCGGAATGTTCGGTATT
TTGTACGAATGTCGccggaagaagaagaaggaagcGGCAATACCCGAATT
GCAAAGAATGAAGAGCGTCAAAGAAGGCCCCGCTATGTGTCGATAAGACA
AAGTACCGATCACGTGGGTTGGTCGTTTATTTTCGTCTTTCTGGATCATC
GGTGGAATCACTCTCTGCTCCATTTTGACTGCTTCCATgactgacgtcat
caatcacgTGACTTTACCCAAACAAGCTACCCTCTCTGGAAAaGTCGGTA
TTTTAGAAGGTCGTTTGTTTGAAGCTCAAATGATCACGAGGAGTGGTGGA
ACTTTCCACGAGATGTCAACAATAGAACATCTATTGGATAGTCTGGAGAA
CGACAAAATATCAGGGATACTCTTGGACTATAtaacaaaaaatgttcttt
ttcctGAAATCATCACCAAGACAAAGCGAGATAAAAATCTATACCGTTCA
ACTTCCTTTCGATCAACTGCTCATAAATCTTACACGTATGGCGCCTTATT
CAGAGAAGAAAGGGACGCCAATTTCTTCAGAAATGTGATTTATCAAACGG
CAGATGGCGTGGAGATTTGCTTCTCCAGAGCTTTTAGGGACAAAATGGAA
TATACTCCACTCGAGTTGTTTTCACCAGATTCGAAAATCTTCCAACATTC
GTGTTTCGTTTTCTTCGCTATTCTCGTTTGTATCGGAATGTTCGGTATTT
TGTACGAATGTCGccggaagaagaagaaggaagcGGCAATACCCGAATTG
CAAAGAATGAAGAGCGTCAAAGAAGGCCCCGCTATGTGTCGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040682XLOC_040682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064865-exon-scaffold_425-1491911889:382525..382672TCONS_00064865-exon-scaffold_425-1491911889:382525..382672Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1510915933:382525..382672TCONS_00064865-exon-scaffold_425-1510915933:382525..382672Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1575043694:382525..382672TCONS_00064865-exon-scaffold_425-1575043694:382525..382672Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1491911889:382832..382901TCONS_00064865-exon-scaffold_425-1491911889:382832..382901Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1510915933:382832..382901TCONS_00064865-exon-scaffold_425-1510915933:382832..382901Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1575043694:382832..382901TCONS_00064865-exon-scaffold_425-1575043694:382832..382901Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1491911889:383184..383234TCONS_00064865-exon-scaffold_425-1491911889:383184..383234Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1510915933:383184..383234TCONS_00064865-exon-scaffold_425-1510915933:383184..383234Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1575043694:383184..383234TCONS_00064865-exon-scaffold_425-1575043694:383184..383234Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1491911889:383688..383917TCONS_00064865-exon-scaffold_425-1491911889:383688..383917Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1510915933:383688..383917TCONS_00064865-exon-scaffold_425-1510915933:383688..383917Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1575043694:383688..383917TCONS_00064865-exon-scaffold_425-1575043694:383688..383917Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1491911889:384447..384807TCONS_00064865-exon-scaffold_425-1491911889:384447..384807Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1510915933:384447..384807TCONS_00064865-exon-scaffold_425-1510915933:384447..384807Clytia hemisphaericaexon
TCONS_00064865-exon-scaffold_425-1575043694:384447..384807TCONS_00064865-exon-scaffold_425-1575043694:384447..384807Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064865-proteinTCONS_00064865-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:382525..384807 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163492	0.15943	0.166543	0	0.570643	0.365356	0.420389	0.393563	0.413314	0.341304	0.0552131	0.108885	0.779478	1.09157	0.495126	0.39021	2.04555	1.79463	4.55762	4.6907	4.63009	5.01935	2.45011	3.6285	7.29243	8.25863	1.15657	0.159501	0.0604878	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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