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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064887 ID=TCONS_00064887|Name=TCONS_00064887|organism=Clytia hemisphaerica|type=transcript|length=1289bp
TAGCAAGTGTCCGTATTGCGTATTGTATTCAGTGAAGGGAGTGAGTCTGT
TGCAAGCGGAGCTGCAGAGTGAAATACAACGACTAGTTACTAGTCTATCt
aaagttgttgttgttgtaaatATCGCGCTCTTTGCATTTTATAGctcaaa
atggcggattaagTGGAGACAAAGTTTTGTTCTCCTCCTGAAATATCAGA
CCAACTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTGCTGTTTA
CAGATTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTTA
CTGTGCTGTTTGCTGCTTGCTCATTTGTAAAACAAgagCTTGAAAACCAA
CTGCGTGGACAACTCTGGACCAGTTGTCATCTCTGTCTTACCCATCATTA
TGACTGATTTATTCAGGTTGGTACTTACTGAGATAGAGGGGGAATCGAAA
GCATAGGTCTAACTTGACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATTACTCGGAATTACTAGATTGCATGGAATTACTAG
ATTACTCGGAATTACTAGATTACTCGGCTAATCAAAACTTGCGACATTAT
CAGATTACTCAGCTTACGAAAGCGACTCAACTTACTTAACTTACTCTTCA
TATTCAGCTCACTTAATATTTATCTACTAGTATCGAaatttaaataaaga
aatttgaattaaaaacctattttacattggaaaaacaaactttattttat
atataatagGAAAAACAAACTCTATTTTGCAtaggaaaaactaaacttta
ttttgcataggaaaaactaaactttatTTTACATAGGAAAAACAAACTGT
ATTTGATCAGGGGTTATTAGAGACAATGgagtgtttgaaattttttcttt
gtttatgaAATGTTATTTCTTAATTACATGCATTTTctgttgaaaacaat
ttttaactTGAGAATCAACTTTTAGACCTTTTATTGCATGTGTCATAAAA
AGCTAAAAtagttaatttttttgtaaattaatGTCCCAAGAGAATATAAT
TGGCTTTCTTTTGCAGATGACAATAAGAATTTTGCACTTCACTTAGAAGC
TTTTTGAAAACACACTTCACACAAAATCTCTCTAAACGTAACAAACACTA
CTATCGTCAGCTACATAAAGAAGTAGGGTTAGGTACAGGCTaaggaaaaa
ccaaactttattttacatTGGAAAAACCATATACACAAAAAACCGTTATA
TTTAAAGGTTATGTACTATAGGTTATGTACTAACATAAN Run BLAST on NCBI transcript from alignment at scaffold_425:330981..334035- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064887 ID=TCONS_00064887|Name=TCONS_00064887|organism=Clytia hemisphaerica|type=transcript|length=3055bp|location=Sequence derived from alignment at scaffold_425:330981..334035- (Clytia hemisphaerica)
TAGCAAGTGTCCGTATTGCGTATTGTATTCAGTGAAGGGAGTGAGTCTGT
TGCAAGCGGAGCTGCAGAGTGAAATACAACGACTAGTTACTAGTCTATCT
AAAGTTGTTGTTGTTGTAAATATCGCGCTCTTTGCATTTTATAGCTCAAA
ATGGCGGATTAAGTGGAGACAAAGTTTTGTTCTCCTCCTGAAATATCAGA
CCAACTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTGCTGTTTA
CAGATTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTTA
CTGTGCTGTTTGCTGCTTGCTCATTTGTAAAACAAGAGGTATGTATTTTT
TTTGGAATAAAATTTTTCAGATCGAGTAGAATAGGCCACAAAACGTCTAA
TCCTGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTGCGCACAAATTCGCAACTTTAAAA
GTACAGTTTTGAATTAGCTTTGATAAAAAAACTCTTTTTTCATTGGCCAG
CGCACTGCCTTTTCTTACAAAATGTTTGGAATTCATTGCGTCTTTTTTAA
AACTTTTGGAACTAATTTTCACGATTTTTCTCAAAAATTATTATTGTAAT
TTTTATGTGTTACACCAGGATCAACTGTGAAAATTTTAGAATTGAACTAA
CCGCAAAAATTAATTCCCGCAAAATGCAATTTTTCTGATTTTTTCACGGA
CCGTGAAAATTAGTTCCCTTTAAGGTGGTTCGCAGACGATATCATACTCC
AGGATGCAAGTGAAATTTTTCAATCCGCGGACCTAGACGGGGGTTCGGTT
ATTATCAGTTAGGGTTAGGGTTGGAGCTCGAGAGTCANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTAACTTAGGATCCCGTAGGGATCCTTGTAGGGGCACCGGTAGGGT
TGGGAGCTTTCTTAATTAAGGTCTGTAAATTACACGCTATAAGTATTTGT
GAATGACAGCCTTCTGTCGTGTCTCGTTGGCATAAGCGGTTAGGCATTGG
GTTTGTAAACCAAGGTTGCTTGCATTTGGTGGTTCGAGCCGGGGTCGGAG
ACCTGTTTCACCGGTACGGGCAAATTTCAGAAAAATACTNNNNNNNNNTA
AGAAAAAAAGGCCAGGAAAACTTTTCATACAGTAATTCTGCTCAGATTTT
AACTGTTTTCATGGAAAAAAGTTCCCAGTAAGTAAATAGTCAAGAGCTTT
CTCGTAAATGAAATTTATTTTTATCAGCATGTGTCATGAATTTGACTGGC
TTTTTGTGATTTTTCTTTAATAACTTTGCATGTAAATATTTTCTTTGACT
AATTAATTTCCAATTGATATGATGATGAATAGTATACATCTTTANTCAGA
AAAATACTTAGAAAACAGTTAGAAACACTTGAGAAAGACAGAAAATCAGA
ATAGAAGATAGGAAAGTAGAAAATAGGGGGGAAATAAGAGACGATGAATC
CTGGAGTATGATATCGTTTGCCAACCCTTTAAGGTACATAGAATAAACAT
AGCAGAAATATTATTAGAATAACCTTTCATCTGCTTGTATCATGGTTATA
AAATTGGTAAATTTTCAAATTCTTTGATGTTAAATTGATATTTCTTCTTT
TCAGCTTGAAAACCAACTGCGTGGACAACTCTGGACCAGTTGTCATCTCT
GTCTTACCCATCATTATGACTGATTTATTCAGGTTGGTACTTACTGAGAT
AGAGGGGGAATCGAAAGCATAGGTCTAACTTGACATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACTCGGAATTACTAGAT
TGCATGGAATTACTAGATTACTCGGAATTACTAGATTACTCGGCTAATCA
AAACTTGCGACATTATCAGATTACTCAGCTTACGAAAGCGACTCAACTTA
CTTAACTTACTCTTCATATTCAGCTCACTTAATATTTATCTACTAGTATC
GAAATTTAAATAAAGAAATTTGAATTAAAAACCTATTTTACATTGGAAAA
ACAAACTTTATTTTATATATAATAGGAAAAACAAACTCTATTTTGCATAG
GAAAAACTAAACTTTATTTTGCATAGGAAAAACTAAACTTTATTTTACAT
AGGAAAAACAAACTGTATTTGATCAGGGGTTATTAGAGACAATGGAGTGT
TTGAAATTTTTTCTTTGTTTATGAAATGTTATTTCTTAATTACATGCATT
TTCTGTTGAAAACAATTTTTAACTTGAGAATCAACTTTTAGACCTTTTAT
TGCATGTGTCATAAAAAGCTAAAATAGTTAATTTTTTTGTAAATTAATGT
CCCAAGAGAATATAATTGGCTTTCTTTTGCAGATGACAATAAGAATTTTG
CACTTCACTTAGAAGCTTTTTGAAAACACACTTCACACAAAATCTCTCTA
AACGTAACAAACACTACTATCGTCAGCTACATAAAGAAGTAGGGTTAGGT
ACAGGCTAAGGAAAAACCAAACTTTATTTTACATTGGAAAAACCATATAC
ACAAAAAACCGTTATATTTAAAGGTTATGTACTATAGGTTATGTACTAAC
ATAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064887-exon-scaffold_425-1575043694:333698..334035 | TCONS_00064887-exon-scaffold_425-1575043694:333698..334035 | Clytia hemisphaerica | exon |
| TCONS_00064887-exon-scaffold_425-1575043694:330981..331931 | TCONS_00064887-exon-scaffold_425-1575043694:330981..331931 | Clytia hemisphaerica | exon |
| TCONS_00064887-exon-scaffold_425-1510915933:333698..334035 | TCONS_00064887-exon-scaffold_425-1510915933:333698..334035 | Clytia hemisphaerica | exon |
| TCONS_00064887-exon-scaffold_425-1510915933:330981..331931 | TCONS_00064887-exon-scaffold_425-1510915933:330981..331931 | Clytia hemisphaerica | exon |
| TCONS_00064887-exon-scaffold_425-1491911889:333698..334035 | TCONS_00064887-exon-scaffold_425-1491911889:333698..334035 | Clytia hemisphaerica | exon |
| TCONS_00064887-exon-scaffold_425-1491911889:330981..331931 | TCONS_00064887-exon-scaffold_425-1491911889:330981..331931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:330981..334035 - |
Blast
The following BLAST results are available for this feature:
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