TCONS_00064911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064911
Unique NameTCONS_00064911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064911 ID=TCONS_00064911|Name=TCONS_00064911|organism=Clytia hemisphaerica|type=transcript|length=651bp
ATACACATAGAAAAAGCAGCCAAATTGAGATTTGTGTATAATATAATAAG
AGATGAAAGAAAGATGTCAGACCAAAATCAAGAGGTCGAAATTACAgtaa
tctgtttttttttacaccAATGGTTCTTCCGGCATCGACTATGTCCGAAA
AGAAACTAGTCATATAATGGTACCAAAAGAGAATGTTACTTTAGTAAAGC
TAAAGAGAATGTTGACTGAGCAAGTTGGCATTAAAAACATTGCAAATCAG
CTTGGTTGGTCTGACTTTGACCTTCATATTTCCCGAAGCAAAAAGAGTTT
GAGTGGTGGTGGAAGCAATTTATTCGCAATGGGCACGGATTTTCAAATCC
GGTTGGAATTACCAAGGATAATTAATGGCGACGACAAGCTTAATGTGAAA
GTATATCCCATCGAAGCTAGATTCAGAGCCAATGCTCCATCCATCTCAAT
CGAAGTAATTAATGGTACAAAAACTCAaccagaaacatcaaaaattgtGA
GGCGAGAGAGAAAAGACAAAATGGAGCATATCGACGTACTATTCCTAAAA
TCGGAATTTGCAAAACTTTCAGACAGCAAACTTGAGGCTTCTTCAGAAGG
AAGAACAGTAAAACTCAAAGATAAGCATCGGATATGGCCTTGGAACGTCC
A
Run BLAST on NCBI

protein sequence of TCONS_00064911-protein

>TCONS_00064911-protein ID=TCONS_00064911-protein|Name=TCONS_00064911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MVPKENVTLVKLKRMLTEQVGIKNIANQLGWSDFDLHISRSKKSLSGGGS
NLFAMGTDFQIRLELPRIINGDDKLNVKVYPIEARFRANAPSISIEVING
TKTQPETSKIVRRERKDKMEHIDVLFLKSEFAKLSDSKLEASSEGRTVKL
KDKHRIWPWNV
Run BLAST on NCBI

transcript from alignment at scaffold_426:6010..7947+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064911 ID=TCONS_00064911|Name=TCONS_00064911|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at scaffold_426:6010..7947+ (Clytia hemisphaerica)
ATACACATAGAAAAAGCAGCCAAATTGAGATTTGTGTATAATATAATAAG
AGATGAAAGAAAGATGTCAGACCAAAATCAAGAGGTCGAAATTACAgtaa
tctgtttttttttacaccAATGGTTCTTCCGGCATCGACTATGTCCGAAA
AGAAACTAGTCATATAATGGTACCAAAAGAGAATGTTACTTTAGTAAAGC
TAAAGAGAATGTTGACGTAAGTTTCTTTAacttcattatttttcaatttt
gaaataataatcATTGGGTCATCAAAagcatttttgaaaagttttcaaaa
tggGAGTTTTCCTAATTTTAACACAAATTTTAAGATAGTAGAATCTTTGA
AATATGGATTTGTCAGGTGGACTAGAGTTCTTTGCTGATTAGATTCTTTT
GCGAATTGAAAACGCAGCGTTAATGATGTCATTCTTTTTCGACATCGTAG
GGAGGCTAAATTACAGAAAAGCGGACCCTTAGAAAGAGTTCTTCACATAA
TTATTATTAATTAATCTGCAATTCAAtcaacaattttcaaattttagatc
ccccttttttcttgatttgataGATTCTTTAAGACCCTTGATGAAAACGg
ggagtttttttttcttaatgacttaattacaaaaatcttccctttttcaa
aaagaaatttttttactcCCCCCTTATTTTATGCAGAAACCATGGTAATT
TGACAGGGAAACAAATAGGTGGCTTGTACGAAAAAATGGGCATGATCTAA
AAAGTGTCTTTTTTCCTGTTGTAGTGAGCAAGTTGGCATTAAAAACATTG
CAAATCAGCTTGGTTGGTCTGACTTTGACCTTCATATTTCCCGAAGCAAA
AAGAGTTTGAGTGGTGGTGGAAGCAATTTATTCGCAATGGGCACGGATTT
TCAAATCCGGTTGGAATTACCAAGGATAATTAATGGCGACGACAAGCTTA
ATGGTATTACCATGATTTCATTCttttaacccttcgagcatcttcctatt
tttttaaTATGGGATGCATCTTGGGAGGGGCCTTATAATCTCAAGATTGA
CGAGTGCTATGACCTTGAAATTCTGATCAGTGGTAGATGTGGATAATTGA
AGATGATTTCCAAAGTTTAGTTAGGCCACCtgtctggttggtattttata
gaccagaatgtaaacttGACCATAATATTGActaaaattttcaccaaaga
taACAATTCATATTCGGTGCACACTTTCACAATTTTAAGTCCAATGacta
aagatttcaaaaagttattaaaaaatttCGTTTGGAGGCCTTTTTGCCCC
GNTAATTTTAAGTCCATTGactaaagatttcaaaaagttattaaaaaagt
TCGTTTGGAGGCCTTTTTGCCCCGCCCCCCAGATGGTCAAATGATTAATC
CTTATCAATTGTCTATCACTTTTGTGCTGCCATTTTAAAGGTGTCCTTAT
AGCTTCACGGCTAGTGAGCTGACTTTCATTTTTCCATTCTCTTTTGCTTT
CAGTGAAAGTATATCCCATCGAAGCTAGATTCAGAGCCAATGCTCCATCC
ATCTCAATCGAAGTAATTAATGGTACAAAAACTCAaccagaaacatcaaa
aattgtGAGGCGAGAGAGAAAAGACAAAATGGAGCATATCGACGTACTAT
TCCTAAAATCGGGTAAGTATTTAAATTGAACACGCGTTATCTTTCTTCAA
GTTGAAATTTTAGTGATGAAGAAATACTTCCCGTTtccaaaaattattga
aatacATGATAAAAGTGAGGCTTGTGATTtactgtaacaaaattttaaga
aacattttaaaaattgacgCTTCATCTATTTTGACTTTCAGAATTTGCAA
AACTTTCAGACAGCAAACTTGAGGCTTCTTCAGAAGGAAGAACAGTAAAA
CTCAAAGATAAGCATCGGATATGGCCTTGGAACGTCCA

Coding sequence (CDS) from alignment at scaffold_426:6010..7947+

>TCONS_00064911 ID=TCONS_00064911|Name=TCONS_00064911|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_426:6010..7947+ (Clytia hemisphaerica)
ATGGTACCAAAAGAGAATGTTACTTTAGTAAAGCTAAAGAGAATGTTGAC
TGAGCAAGTTGGCATTAAAAACATTGCAAATCAGCTTGGTTGGTCTGACT
TTGACCTTCATATTTCCCGAAGCAAAAAGAGTTTGAGTGGTGGTGGAAGC
AATTTATTCGCAATGGGCACGGATTTTCAAATCCGGTTGGAATTACCAAG
GATAATTAATGGCGACGACAAGCTTAATGTGAAAGTATATCCCATCGAAG
CTAGATTCAGAGCCAATGCTCCATCCATCTCAATCGAAGTAATTAATGGT
ACAAAAACTCAaccagaaacatcaaaaattgtGAGGCGAGAGAGAAAAGA
CAAAATGGAGCATATCGACGTACTATTCCTAAAATCGGAATTTGCAAAAC
TTTCAGACAGCAAACTTGAGGCTTCTTCAGAAGGAAGAACAGTAAAACTC
AAAGATAAGCATCGGATATGGCCTTGGAACGTCATGGTACCAAAAGAGAA
TGTTACTTTAGTAAAGCTAAAGAGAATGTTGACTGAGCAAGTTGGCATTA
AAAACATTGCAAATCAGCTTGGTTGGTCTGACTTTGACCTTCATATTTCC
CGAAGCAAAAAGAGTTTGAGTGGTGGTGGAAGCAATTTATTCGCAATGGG
CACGGATTTTCAAATCCGGTTGGAATTACCAAGGATAATTAATGGCGACG
ACAAGCTTAATGTGAAAGTATATCCCATCGAAGCTAGATTCAGAGCCAAT
GCTCCATCCATCTCAATCGAAGTAATTAATGGTACAAAAACTCAaccaga
aacatcaaaaattgtGAGGCGAGAGAGAAAAGACAAAATGGAGCATATCG
ACGTACTATTCCTAAAATCGGAATTTGCAAAACTTTCAGACAGCAAACTT
GAGGCTTCTTCAGAAGGAAGAACAGTAAAACTCAAAGATAAGCATCGGAT
ATGGCCTTGGAACGTCATGGTACCAAAAGAGAATGTTACTTTAGTAAAGC
TAAAGAGAATGTTGACTGAGCAAGTTGGCATTAAAAACATTGCAAATCAG
CTTGGTTGGTCTGACTTTGACCTTCATATTTCCCGAAGCAAAAAGAGTTT
GAGTGGTGGTGGAAGCAATTTATTCGCAATGGGCACGGATTTTCAAATCC
GGTTGGAATTACCAAGGATAATTAATGGCGACGACAAGCTTAATGTGAAA
GTATATCCCATCGAAGCTAGATTCAGAGCCAATGCTCCATCCATCTCAAT
CGAAGTAATTAATGGTACAAAAACTCAaccagaaacatcaaaaattgtGA
GGCGAGAGAGAAAAGACAAAATGGAGCATATCGACGTACTATTCCTAAAA
TCGGAATTTGCAAAACTTTCAGACAGCAAACTTGAGGCTTCTTCAGAAGG
AAGAACAGTAAAACTCAAAGATAAGCATCGGATATGGCCTTGGAACGTCA
TGGTACCAAAAGAGAATGTTACTTTAGTAAAGCTAAAGAGAATGTTGACT
GAGCAAGTTGGCATTAAAAACATTGCAAATCAGCTTGGTTGGTCTGACTT
TGACCTTCATATTTCCCGAAGCAAAAAGAGTTTGAGTGGTGGTGGAAGCA
ATTTATTCGCAATGGGCACGGATTTTCAAATCCGGTTGGAATTACCAAGG
ATAATTAATGGCGACGACAAGCTTAATGTGAAAGTATATCCCATCGAAGC
TAGATTCAGAGCCAATGCTCCATCCATCTCAATCGAAGTAATTAATGGTA
CAAAAACTCAaccagaaacatcaaaaattgtGAGGCGAGAGAGAAAAGAC
AAAATGGAGCATATCGACGTACTATTCCTAAAATCGGAATTTGCAAAACT
TTCAGACAGCAAACTTGAGGCTTCTTCAGAAGGAAGAACAGTAAAACTCA
AAGATAAGCATCGGATATGGCCTTGGAACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040716XLOC_040716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064911-exon-scaffold_426-1491911889:6010..6225TCONS_00064911-exon-scaffold_426-1491911889:6010..6225Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1510915933:6010..6225TCONS_00064911-exon-scaffold_426-1510915933:6010..6225Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1575043694:6010..6225TCONS_00064911-exon-scaffold_426-1575043694:6010..6225Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1491911889:6784..6962TCONS_00064911-exon-scaffold_426-1491911889:6784..6962Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1510915933:6784..6962TCONS_00064911-exon-scaffold_426-1510915933:6784..6962Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1575043694:6784..6962TCONS_00064911-exon-scaffold_426-1575043694:6784..6962Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1491911889:7513..7671TCONS_00064911-exon-scaffold_426-1491911889:7513..7671Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1510915933:7513..7671TCONS_00064911-exon-scaffold_426-1510915933:7513..7671Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1575043694:7513..7671TCONS_00064911-exon-scaffold_426-1575043694:7513..7671Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1491911889:7851..7947TCONS_00064911-exon-scaffold_426-1491911889:7851..7947Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1510915933:7851..7947TCONS_00064911-exon-scaffold_426-1510915933:7851..7947Clytia hemisphaericaexon
TCONS_00064911-exon-scaffold_426-1575043694:7851..7947TCONS_00064911-exon-scaffold_426-1575043694:7851..7947Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064911-proteinTCONS_00064911-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_426supercontigscaffold_426:6010..7947 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.053457	0.0533827	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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