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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064917 ID=TCONS_00064917|Name=TCONS_00064917|organism=Clytia hemisphaerica|type=transcript|length=2567bpRun BLAST on NCBI transcript from alignment at scaffold_427:218330..242496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064917 ID=TCONS_00064917|Name=TCONS_00064917|organism=Clytia hemisphaerica|type=transcript|length=24167bp|location=Sequence derived from alignment at scaffold_427:218330..242496+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064917 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2) HSP 1 Score: 389.423 bits (999), Expect = 1.337e-123 Identity = 214/517 (41.39%), Postives = 315/517 (60.93%), Query Frame = 2
Query: 356 ATNTTIVNEEVISNGVEPLYPLGNDRYQSNVDDTQVRIEKLDEGRDAWGNKIEFILASIGLAVGLGNVWRFPYLCQKNGGGAFLIPYFIMMVIEGIPLFYIEFAIGQRFRRSAPGAWARIHPALKXXXXXXXXXXXXXXXYYVCVIAWSFLYLFVSMTDKLPWTIENCPRYSEYKPLADQCAANSSMCDAKNNFNECCMKDPQLYYFYRKALDVSVDITDSGSGFNGKLFGCLILSWVVVYACIVKGVKSSGKAVYFTATFPYLILIILFFVGVTLDGADIGLKKLFTPKWEKLKDPGIWMDAAAQMFFTLSLGFGALISFASYMPLRNNCVRDAYTVVLINCGTSLFAGIVVFSILGHREKVTGNPV-DKVGGGPGLAFITFCDAFLQMPVSPLWSSLFFIMLILLGIDSEFGTLEGAIAPFYDM--NWIKMKKEFFTALTAILMMLIGIGLVTKSGFYVFQIFDDHSVS-LGLLFIAFFQVVAVSWVYGNDKFGNDIEYMTGKRPYLFWMICWKY 1894
ATN + V + IS V P+ ND+ ++ V Q + L + RD W + +F+++ +G A+GLGNVWRFPYLC KNGGGAFLIPYF+ ++ G+PLF +E ++GQ G W ++ P KG+G++ ++S + IYY+ +I+W+ YL+ S T LPW + P + D+C +N SM + N + F+ + + D D L L ++W++VY CI KGV +GK VYF+AT+PY++LIILFF GVTL GA G+ TP + KL D +W+DAA Q+FF+ LG G+LI+ SY NN RD+ V IN TS+FAG V+FSI+G VT + D GPGLAF+ + +A Q+P+SPLW+ LFF ML++LGIDS+F T+EG I D ++ ++E F A I+ LIG+ +T+ G YVF++FD +S S + LLF+ FF+ V++SW YG ++F ++I+ M G RP ++W +CW +
Sbjct: 2 ATNGSKVADGQISTEVSEA-PVANDKPKTLVVKVQKKAADLPD-RDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNT------DRCFSNYSMVNTTN-------MTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSF 502 The following BLAST results are available for this feature:
BLAST of TCONS_00064917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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