TCONS_00064941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064941
Unique NameTCONS_00064941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064941 ID=TCONS_00064941|Name=TCONS_00064941|organism=Clytia hemisphaerica|type=transcript|length=1968bp
CACAGAtcgtattcatgcagtacgaaGATCCGTCCGCCGACCCACTTTCA
GAAGATCGCTTTCATATAGAGATGTTCTTCAGCCCAGGCGTCAAGACTCC
GGACACGAAAGAATTAGCGGAACAATTAGCGGACGAATCACAAGAAAATG
ATTATCACGGATCTTTCGAACTTGGTTGTTGTGGATCAAGCGATCGACTG
AACGTTCTCAAAAACATTGGCCTTGAACAAGCAAACAAACCAGTGATGAT
TAAAAAACCCGAACGTCGGTTCTCGTTACCGACTTTATCGTCGGACGAGA
ATGACGTCATCGTTACTGGAGAcgagaaaaaacaacaagataCAAAGAAG
ACGAGGTTTGACGAACAAACGAAGAGACCTCCTTTGTTGCATTCCATGAG
TTATACAAAACCTGACGAAAAGAAATTGACAAAACAACGACGACTTAGTG
GAAGTGAGATGCCAAGCACGTCACCGGTACGCATGTCTCTTCAGCCGATG
TTGGAAAGAGTTAGCTCTGGTATGGAATCTAAAAAGACGGTTTTTAGCAC
GAGTTCGATGAGCGATACTGAATCTGTTTCATTGATTGGTGCTGACGTAA
TCGATACTCTGCCATCACTACATCCTTTGGTATGTTTACACAGCAAAGTC
CGACAAAAATCCATGGACCATTTCCTTACAACTCTTATGGAGACGGAGTC
TTCGGGAGTGGAGCCTGAAGGTGCGGATATTAGAAAGATTAGCATGGCGC
ATGCTAACACGAACACTTTGAGTGAGAAGTTATACCAAGTGAAAGAGCAT
TGATTTAAATCTCTCTCGTCATTGGATCTCTTCTGAATGTTGGATCAAGT
GGTTCCGACACGAACAAGGTCTAGACCCAGgaagcacacaacgttgtttc
aacgtttatctaacgttcacaacgtccatataacgtgagatgaacgttga
agcaacgttAAACACCAACGCAGAATTATGAAATGACTGAGTAAGCCCAC
TAAGCTTTATAAAAACCCTGGAAGAAGGTTCTCAATCTCGGCCAACCATa
caatctttgatcggagtttttttatttgtaaaactacTGAAAATCGTCTC
GAGAGAGAGAGAGCTATATCTACTTTTTCTTGACTAACTGCTCGAGGTAG
CGTTATTTGACGTGTACTACTCACTGTCACTGACCtttttatatatccct
ggaccaagctatatccgccatctttgatcgaagtttttttaaattggtac
ccgtaaagaagccattgcagtgttaaaaattaccgtctaacggcgctaca
tcatcaaaagttttcgagggaaagtagatctagcgctctcgatgcattta
caccgctattgagtagtgccgctattagggtaccacttttcaaaaaactc
cgataaaaagatttttgcttggccgggattgaaaaacttggtccagggta
tataaaggtcagtgaaaCTACTTtaaaactctgatcaaagatagTGGACG
TAGCTTTGTCAAGGGTTTGAATAAATATCACTGGGTAAGTCTCACTATTG
GAtgaatgaaattgaattaaCATTTTGTGAGGAAAGGAAGTTTTCTGATT
TACTGTTTGCGAAGAAGAAGAGCGAAAATTTAGAATGGATACCTTTTTTT
TAATGCTCAGTCTGAACGAAGGGAAGATGGAAGTTTTGAACTATTGTTGT
TTAAGCAATATGCAGGCGAggccaatttgatttgttgttttacagaCCCA
GCTACCCAAACAAGAGGGTCGTTCGGTCggcgaaaaattaaaaacaaaag
tagAATTTgcctataaaatctcctaaaaaggcagcaaagaCTACTAATTC
TTGACAAAAatacgaaatagaaaataaaaaggttgaattcatggataaaa
cgaaagatttaacaaaaaattctcaaaaccttggaaaaacaaccaaaatt
ttggAGATTTGAGAGTCt
Run BLAST on NCBI

transcript from alignment at scaffold_427:415323..420787+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064941 ID=TCONS_00064941|Name=TCONS_00064941|organism=Clytia hemisphaerica|type=transcript|length=5465bp|location=Sequence derived from alignment at scaffold_427:415323..420787+ (Clytia hemisphaerica)
CACAGAtcgtattcatgcagtacgaaGATCCGTCCGCCGACCCACTTTCA
GAAGATCGCTTTCATATAGAGATGTTCTTCAGGTATGATTCGTAACGATT
CCATTtcactccgaaacgaaatgaagccattctattggttaaaagtgacg
taaaacctGAATGTAACCAATCGAATGGCTTTATTTCATTTCGGAGTGAA
ACAGAATCGTTTCGTGTCGCTCCGGTATGGTTTACTTTACGGATTGCGAG
AGTTCACATTTGTATTGCAACGTTtctgagcaagaaaacggatcagttcc
gttccgatgaaaatagtggaacGAAACCGTATCGATCTGTTCTCTTTTta
acgtttcgaattttgacgttaaCACTtttttcggaaccgtttcgtttggG
AAGGATACGGAACCGTAAAGCCTGAACACGGTCTTAAAGACGTGCAAGAC
AGTTAAAGGTAATCTGAACTCTCTCATTACGAGACCCCATTCCCTGAGAG
AAATGATTTCTTTCCAACACGGAGATTTGATCCTCCACCAATACACATGC
AAGCATTCTTACTCAcgatttatttatattttattatctGGCATCCGATG
TACATCTTCTCTTTCGACACACTAAATCGGGAAAATTTTGACTTCCGACA
GAAATTCAGCCAGGTTTTCAGTGTTTACGCGACTGGGGATGTCGGCATAT
CAATGTTATTAGATTACCCTTTAATGAGAGCACTCCTCTAGAGCTCTATT
GTGGGCGATCGCAAATTCACCATTGGAGTATCAGATGAGATATTTGAATC
CGCCCTTGTTGTGAAGCGACAAGCCGAAGCATTTAACGCTGTCATCGAGA
caaaaggtccaatctcaaaattagtgtGTCAAAAAACTGAGTCAAGTTTG
CTTTTCTAACTTGAAAATTGTAAGATTTATCCTTTTCTTGTAGTGGAGAA
GGATCCTATCTACAAGAGAAAAGTGTCAATCTCTAAATTTTAACTTATAA
GCAAAGTAAAAAGAAAGTTCTTAGACACCTGTTCTGAGATTGGACCTTTT
GTCTCGACGGCAGCGTTATAAGCATGTGCCATCATTACGTACATCAACAC
GTTTAACACTTgtaaattttattaatttatttgatcTGTTTAATATTCAG
CCCAGGCGTCAAGACTCCGGACACGAAAGAATTAGCGGAACAATTAGCGG
ACGAATCACAAGAAAATGATTATCACGGATCTTTCGAACTTGGTTGTTGT
GGATCAAGCGATCGACTGAACGTTCTCAAAAACATTGGCCTTGAACAAGC
AAACAAACCAGGTGACTTTTGATGGCTTTTCTTTCTGACATGTTTCatta
taccttaagggaactaattttcgcgggaactagttttcgcggaactaatt
tttgcgggaactattTTGGGGAGCTGTTTTCAGTGTCTACTGCGAAAATA
GTTCCGCGAAATGCAATCTTTACTAAAAATCCTCTAAAACACTTAGGAGT
ATAAAAGAATTTCGGCAAAACGTGGGTGTCAATTGCGGAAATAGTTCTGC
AAAAAATGCGCCAATTTAGTACCCTCgtaccgcgaaattaagttccgcaa
aaattagttccttcAAGGCATTTAtgatgaaatcttttttttaatacgAT
TCGAAAAACACCAAGTATTCGTCCATTAGAGTATTaagtatttatttaag
tattcgTCCTTAGCTCTTAGTTTAAAAAGTTTAGTAAAAGTTTTGCTTAG
TCGCGCCTTGAGctgttttgaagattttatatCCTGACTTTTTTGTTCCA
AATTGCAACTTGCTTTACGAAATTGCAGCTTGCTTTACGAGATTGCAACT
TGCTTTACGATCATGGTATGTATACATATTgatatttttaggtttttgtt
aacttttttcagaatttaaagttatttcattggatttttcagtTTTGAGG
GACtcagtggcttccaggctatattcacagccttattggaacattttttc
aaacttttggatTGCGAGATCCTAAGGCCCTAACTGACCGTTCACTTTTT
TCAGCCCGGTAACCCGGAGGAAAACCTTTGGAAATATTCCAACAAAAAGT
TCAGGACGCGATATCTTATTACCAGGTTAGTCGGCTGTAGTAGACTGCAA
AAGTATTTTTGTATGACTTTCTTGACATGAAATGCTTATCATATGAGTGG
ACCCAGTATAGTGAGAAAGTATATTAAAATTGCACTACAAATTAGAcagt
ttcaaatatttttttggacaCGCATACACATATCAACATACACATACACA
CACACCGTTCTCGTTTGTAGTGATGATTAAAAAACCCGAACGTCGGTTCT
CGTTACCGACTTTATCGTCGGACGAGAATGACGTCATCGTTACTGGAGAc
gagaaaaaacaacaagataCAAAGAAGACGAGGTTTGACGAACAAACGAA
GAGACCTCCTTTGTTGCATTCCATGAGTTATACAAAACCTGACGAAAAGA
AATTGACAAAACAACGACGACTTAGTATGTGATCTCGAGTGCCTGATAAA
CAGGCAACAATTTAACACGAAAAAACAACTAAATTTGTGATGAATCTTTG
CAAATATTCCAGACAATAATTCAATTATATTGTATTACTGTTAGGTGCTT
AATCACGCCCCccttttgtttagtttttcgattttttccttttcataaat
tgttttaagtgcaacgactgcctcgttttgaaaccattaccaggGTGATT
ATATCCCTTAAAAGACTTCAAGACTTTTACagtggcaatattttcaaaac
gaggtaagcatatttcttgatgtcatttatgaaaatgtctatCACGATTC
ACGATAACAAATATAATCAAATTTCTTACGAAATAAGTGGCTTTACCGCA
AATGAAATATCCATATTAAAAATATAGAAACTTTGCGCTTTAATGTATTT
CCTTTGTCTCCCTTACGTGCAGGTGGAAGTGAGATGCCAAGCACGTCACC
GGTACGCATGTCTCTTCAGCCGATGTTGGAAAGAGTTAGCTCTGGTATGG
AATCTAAAAAGACGGTTTTTAGCACGAGTTCGATGAGCGATACTGAATCT
GTTTCATTGATTGGTAAGGTTTTTTATATATCTTATTTTtgtcaatacac
cttttcgacggTCGTCGCGGGGTCAGGCGGTCATtttctttaggtgcgaa
aaaaagactgtgACAGTTTTAGAGTGGTAAAACGGAAAAAAATACCCGCG
CGGCAAGTGGCGGCTACGGTCTAAAAGGTGTATAGATGATGTTTGTTTTA
TCCATTGtgtttacacgtttttcttataagaatattcaaaattttcggat
gctcttaacttttgagttttaagcttaaaatgtctttaaaatgttcttat
tcccccttttgtgagtattttttgtccatttccctaTTGGATGTACTaga
gtcctcaaagccttaaCATGATTTTAACccgttcttaacattttggccat
cgaagccttattttcctatatagtttgttcttataaaaaaacgtgtactc
agGTTCAAtatctaccttaagggaataaattaatgggagaataaattaat
gcggaaTTAATTAATGTGAAATTAATTAATGCGAATTTGGCCCTAAGTCG
CATTATTTAGTTCTGCAATTCTTAAAATTGGTCAATTCGCATTAATAAAT
TCCacaatttcaataattttgctGTGATTTTATCATTAATAAAGTTTAGA
ATGTGGCTCATTCGTATTAATTAATTTCGccaaacatgaaattttttttg
gtgtcattcgcattaatttattccgcatgaattttttcttattctcagcc
tgagcaattccttatttttcggaccattttcagcctcaagttccttataa
acgtgttccttataaaaaaacgtgcaataTTTTTCACACACACATATATA
TGCTATGTATTTCACACGTTTTCACGTTGCCGTTGTGGCTTCGGGAACTC
TCTAATAGGCTTGTTAAGCCTGACTAAATATGCAAGGAGTTCAAACCTCC
TGGTTCCGGTGATTTCAAGTGTATTTTATATTTAGGTGCTGACGTAATCG
ATACTCTGCCATCACTACATCCTTTGGTATGTTTACACAGCAAAGTCCGA
CAAAAATCCATGGACCATTTCCTTACAACTCTTATGGAGACGGAGTCTTC
GGGAGTGGAGCCTGAAGGTGCGGATATTAGAAAGATTAGCATGGCGCATG
CTAACACGAACACTTTGAGTGAGAAGTTATACCAAGTGAAAGAGCATTGA
TTTAAATCTCTCTCGTCATTGGATCTCTTCTGAATGTTGGATCAAGTGGT
TCCGACACGAACAAGGTCTAGACCCAGgaagcacacaacgttgtttcaac
gtttatctaacgttcacaacgtccatataacgtgagatgaacgttgaagc
aacgttAAACACCAACGCAGAATTATGAAATGACTGAGTAAGCCCACTAA
GCTTTATAAAAACCCTGGAAGAAGGTTCTCAATCTCGGCCAACCATacaa
tctttgatcggagtttttttatttgtaaaactacTGAAAATCGTCTCGAG
AGAGAGAGAGCTATATCTACTTTTTCTTGACTAACTGCTCGAGGTAGCGT
TATTTGACGTGTACTACTCACTGTCACTGACCtttttatatatccctgga
ccaagctatatccgccatctttgatcgaagtttttttaaattggtacccg
taaagaagccattgcagtgttaaaaattaccgtctaacggcgctacatca
tcaaaagttttcgagggaaagtagatctagcgctctcgatgcatttacac
cgctattgagtagtgccgctattagggtaccacttttcaaaaaactccga
taaaaagatttttgcttggccgggattgaaaaacttggtccagggtatat
aaaggtcagtgaaaCTACTTtaaaactctgatcaaagatagTGGACGTAG
CTTTGTCAAGGGTTTGAATAAATATCACTGGGTAAGTCTCACTATTGGAt
gaatgaaattgaattaaCATTTTGTGAGGAAAGGAAGTTTTCTGATTTAC
TGTTTGCGAAGAAGAAGAGCGAAAATTTAGAATGGATACCTTTTTTTTAA
TGCTCAGTCTGAACGAAGGGAAGATGGAAGTTTTGAACTATTGTTGTTTA
AGCAATATGCAGGCGAggccaatttgatttgttgttttacagaCCCAGCT
ACCCAAACAAGAGGGTCGTTCGGTCggcgaaaaattaaaaacaaaagtag
AATTTgcctataaaatctcctaaaaaggcagcaaagaCTACTAATTCTTG
ACAAAAatacgaaatagaaaataaaaaggttgaattcatggataaaacga
aagatttaacaaaaaattctcaaaaccttggaaaaacaaccaaaattttg
gAGATTTGAGAGTCt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040723XLOC_040723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064941-exon-scaffold_427-1491911889:415323..415404TCONS_00064941-exon-scaffold_427-1491911889:415323..415404Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1510915933:415323..415404TCONS_00064941-exon-scaffold_427-1510915933:415323..415404Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1575043694:415323..415404TCONS_00064941-exon-scaffold_427-1575043694:415323..415404Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1491911889:416473..416633TCONS_00064941-exon-scaffold_427-1491911889:416473..416633Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1510915933:416473..416633TCONS_00064941-exon-scaffold_427-1510915933:416473..416633Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1575043694:416473..416633TCONS_00064941-exon-scaffold_427-1575043694:416473..416633Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1491911889:417643..417846TCONS_00064941-exon-scaffold_427-1491911889:417643..417846Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1510915933:417643..417846TCONS_00064941-exon-scaffold_427-1510915933:417643..417846Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1575043694:417643..417846TCONS_00064941-exon-scaffold_427-1575043694:417643..417846Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1491911889:418295..418435TCONS_00064941-exon-scaffold_427-1491911889:418295..418435Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1510915933:418295..418435TCONS_00064941-exon-scaffold_427-1510915933:418295..418435Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1575043694:418295..418435TCONS_00064941-exon-scaffold_427-1575043694:418295..418435Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1491911889:419408..420787TCONS_00064941-exon-scaffold_427-1491911889:419408..420787Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1510915933:419408..420787TCONS_00064941-exon-scaffold_427-1510915933:419408..420787Clytia hemisphaericaexon
TCONS_00064941-exon-scaffold_427-1575043694:419408..420787TCONS_00064941-exon-scaffold_427-1575043694:419408..420787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:415323..420787 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00846317	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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