TCONS_00064947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064947
Unique NameTCONS_00064947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064947 ID=TCONS_00064947|Name=TCONS_00064947|organism=Clytia hemisphaerica|type=transcript|length=310bp
CAGCTTTGTTGGGATTTGTGGCCATTTTTTTGATTCAAAGAAATGCTGAC
TCATTGGTCGGAAGAACGATAGATCCTGACCGTTTGCGTCGCATCATCAA
TGTTTTGGAGAACGACATCATGGTCAGGTCCATACATGATGTCAAAGCCA
CTGATATGGGCATCGATACTATTCGATTCAAAGCAGAAATCAATTTCGAT
GGTCGTGAAATCACGAGGGTTCATTTAAATCGTCTCGATATAGACGTGTT
GCTCAGGGAAGCGAAGAAGATCAACACAACGACAGAGTTGGAGATGTTTA
TGTTGGAANc
Run BLAST on NCBI

transcript from alignment at scaffold_427:37896..43210-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064947 ID=TCONS_00064947|Name=TCONS_00064947|organism=Clytia hemisphaerica|type=transcript|length=5315bp|location=Sequence derived from alignment at scaffold_427:37896..43210- (Clytia hemisphaerica)
CAGCTTTGTTGGGATTTGTGGCCATTTTTTTGATTCAAAGAAATGCTGAC
TCATTGGTCGGAAGGTATACCTCAACTAATCATTGTATTTCATTTTATGA
TGGACATTTATCATCTCTGTCCTTGTTTCTCTAAATATTTACTCAGAAGA
AGAAGAATATTTCAAGCTTACCCTTATCAGTGACAGAGATCATCAAATCT
TTACATTGCTGTTGATTGTTATACAAGTGTGTATTTCTTTTTTAACAGAA
CGATAGATCCTGACCGTTTGCGTCGCATCATCAATGTTTTGGAGAACGAC
ATCATGGTCAGGTAAGTTCGAGTTGGTTTTAAATTTCATTTCTTTTACAT
TTTGTTGTGTTGGGCTGGCAGTGTTATTGATATATTTTGATTTGGGAAAA
TGCCGACGCTTCATATTTTTCGTTTAGGTCCATACATGATGTCAAAGCCA
CTGATATGGGTATGTCTGTTTGAGTTTTTTGGACCTACCCCGGTGGGGTG
GAGGTCCTATAAATTAACCTGTGTTCGTCCGTTCGTCTGTTACCAACTTT
TCTCAGGATTGAATCATAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGGATTGAATCATAGGAATCTTTTGATTTTTAGTACAAAGGTGCA
AAATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAACAATTT
TTTGGGGTAAATTTGGGCTGAAAAACGGCTGAAAAACGGGTTTTTTGGAC
TTTGTGAAAAATTGGATCATTAATCTTTTCTGATTTTTTGCATGAAAGTA
GGGTACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTTGAAAAAAAAT
TTTGTTGACTCAAAAAATGTATGTTTGTCTATAAGAATTACTATTAATAA
GCATACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGAGATGGA
TGTTTTTTTGCTCACGAGAGCTTACTTTTGAAGAATATGTGTGTTTAGAC
ATGAAATTTTGGTTGCTTGGCGTGTTTTTATAGAGAAACTGGCCAAATTC
GATATTTTTTTATAAGCACACTTTCAATTACTTAGGTATTAGCTTTTCTC
GAGATTGGCTCTTTCATTCTTTACGATTTTTTGCACAAAGATGCATAACT
ATAATCCCCCGAATGTGACAGAACCCGATTTTCGAAAAACAATGTTTTTG
AGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGCTTTTTGGACTTTGT
GAAATATTGGATCATTGTTTTTTTTCAGATTATTTTGCATGAAAGTAGGT
AAACTATGGCTCAAGCAGATTTTCGTTAAAAAAAAAATTTTCAACTAAAA
AAAACGCATCTTTATCTATAAGAATCACTATTAATAAGCATACATCAATG
TTCTTAGCCAAATTACTAATTTTTTTGATGAGATAGATGTCTTTTTTGCT
CACGAAGTCTTGAATATGAAAGAATATCTCAAGAGTAAGAAATTTTGGTT
ACTAAACGTTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCA
CTATTTGTGTTCTGAATGATTGTTTAACGGTCATGCTCACGTAGATATCA
ATTATAGGTGAATTGATAATATGCGAGTTGCGAGTTGGTCCCGCGAGTTG
CGAGTTGCTATCAAATATGCGAGTTGCGAGTTGGTTTTTGCGAGTTGCGA
GTTACGAGTTGCTATTTTAACCAAATAAAAGTGCGAGTTGTGAGTTGAAA
ATTTCATGTTAAGACATCAAAATCGCGAGTTGCAGATTAAAATCACGAGT
TGCAGATTAAAATCGCGAGTTGAAAAATCAAAAGTGCGAGTTGAAAATTA
AAATCGCGAGTTGCAAATTAAAATCGCGAGTTGAAAAATCAAAAGTGCGA
GTTGAAAATTAAAATCGCGAGTTGCAAATTAAAATCGCGAGTTGCAAATT
AAAATCGCGAGTTGAAAATTGAAATCGCAAGTTGCAAATTAAGATCGCGA
GTTGCAAATTAAAATTGACAGTTGAAATGAAAATTTGTTTTCGTACTTTC
TTAATTATATGAATTTCGCATTTTTGCAGTTTGATTATTGTCTTTATTTT
GCAGAAATACGGTATATTTTGAGGGTAAAGAAATATTTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATT
TTTTTAGACCATCAAGCGTCTGGTTTTCTGAGTTACGATAGTGAATAGTG
CTTATCCATATGAAATAATGCGCGCGCGTGCGGGGTTTAAAAAGCAGTAC
GGCACAGCACAGGGCGGGGGTTTATTCGTGAGTGTACCTGTGTGTTGATA
GCTTAAGGTTAAGCAGCGTCCAGCGCGGAATTCGAAGGTTAACTACTGGT
TTTTCAAGAAAAAAATCCAAACTCCCACTGTTGAGAGGAAGTCGAAGCCA
CTCCATTTTTTTCGGTTCAAAAAAAAAATTATTTTTCCCGGTATTTTGAT
TTTATTACGCGTAAACACTCAACTTGAAGTGAATCAAAACATTCCTCTGA
TATTTTTAAACGAATACGCAGAATCAGCATACCTATTTTAAATGCTCCTA
AAAGTAGTCGTTTACTTTTTCTAAGTAGATTTTCCCATTAAAGGATAGAA
ATTCTGATAGTAATTCTCTATATTCTCTTACTAGTAAATTTACTATGGAT
TGCTCCACGTTTTGGTCTATTCGAAAAACCACAAGCGATTATTCAATCAA
AAGTGTTCGGATAAACATGGTGTTAAATTTATTATATAAGTGTAGTCGGT
CAGTGTATAAAACAATGCTGAAGGTGAGGCCACCCGGAAGGGCGGCCACA
TTCGTTCGTAATAAACTTGCGTTGCAAGGGCCCAGTGGATCGGTGAGGCG
GGATTTGAGGTCAGCAGATCTCAGTGTGCAGTTCCACTGTTGCGATAAAA
GTGTCGGGATTCTCAAAGTAGCGCAAGGACATGACAGAACGAATGAGAGC
TATCGAGCCAATGCTCACCACGAATGAACGAGTTCAACTATTATTTCCAA
TCTAGGATTTTCTTTCTTTATTCTATCGTGAATATTTATTTTACCACCTA
CTATATGAAATTTTAAGATTCGAATTACACCAGTTTCACAGTATAAATAG
TTTTCTATCAGCTTTTATGCTTCCAATACAAAGCTTTTCTCCAATTTTGA
ACCTAGACATGGCGCCCTAACAACAAAATTATCCACACTGGTTGAAACTC
ACACATTAAAATTTGCAACTCGCACTTTTGATTTTTCAACTCGCGATTTT
AATTTGCAACTCGCGATTTTAATCTGCAACTCGCGATTTTTATGTCTTAA
CGTGAAATTTCCAACTCGCAACTCGCACTTTTATTTGGTTAAAATAGCAA
CTCGTAACTCGCAACTCGCAAAAACCAACTTGCAACTCGCATATTTGATA
GCAACTCGCAACTCGCAACTCGTAGGACCAACTCGCAACTCATTTGTTAA
AAATCCACAATTATAGCAGATTATATATGTGTTAAATGCATAACCAGGTA
GGTCCATAAAAGTATCACTTGTTTTTTCATGAAGGATTTCCTTCTTTGCG
CATCAAATGGGGAAAAATTTAAACTCAATTTCTCATTTGTAAGGGGATTT
TAGTGTGGTCGATGAGTAGAGGGTGGCTAAAACACAGTCTTTTTTTAATT
CTAAAACAAGGGAAATTTCATTCATCATTCTCAAAATACGTGAATTATTG
TATTTGGGCTCATCGAATACTCGTATTACATTATTGATTGATTTCGTTTT
CTAGCATTTCTTTGCACTGAAACCCTACATATTGATAAAAATGTATCAAA
GCAATATAACCAGAAATTTCGCGCGGATAAATTTTAGCGATCTGGCGATT
CAGCGTGTTTTAGCGAGATTTATTTTAGCGAAAATAGGGAAAACTCGCTA
AAACGCTAAAATTAGTCTCGCTAAAATTTCTACGATTAAAGTAGTAGTTT
TAGTAGTAAGTAGTTTTTCTGTAACTTTTGTTTTCATTAATATTTTGGTA
TCGACTAAAAAGTGATCCAATGATAAGCAGTCGAAGGATCTTTTCATTTT
ACAGGCATCGATACTATTCGATTCAAAGCAGAAATCAATTTCGATGGTCG
TGAAATCACGAGGGTTCATTTAAATCGTCTCGATATAGACGTGTTGCTCA
GGGTACGTGACTTCTTCAATTATTTTATGCAAACCATGTTTAGACATGTT
CAAACCTCAGTAGACCTGACAACGATCAGAGTGCTTGTTCACTTTAATCA
TTTCCACTCTAACAATAGGAAACAGTAAAGAATAATTTTGAGGTTGAAAA
TGAAAATCTACTAAGCATATTGAGCTTCAGCCAATTTCCGCTTTTTGAAA
GACTTGTCTGTATTTCAGGAGTGTATTTTGAGCAAAGAAAACATTCGTTG
TTTTTTAGGAAGCGAAGAAGATCAACACAACGACAGAGTTGGAGATGTTT
ATGTTGGAACACGGTGAACAGATCATCGATGTCCTCGGAACTCAAGTCGA
TCGCATCGAACGAAACATCAAAAGTAAATCACCTGAAGTCAGGCACATCG
ATCTCGAAATCTTATGATGACGTCATGCATTTTAATCTTCCACTTATTTT
TTTGTTATACTTGTACATAGGTTTTATACATTATGAATTACATTGATAAT
AATATGCCAAAATAATGCCAAAAACCAACTATTTTTTTTCCATTTTTCTC
TTCCCATTTTCTTTGAATACTCCAGACTAGCTAGCAAAGGACTTTGTGAA
GGACGAAGAACTTTCGGCAAAAAAAACAAAATGCTGACAACTAGATAACC
TTTAAGGTCTTTAGATTTCTTTTATAAAATCTATCAAAGGAAATTCTAAA
GGCTTGGGGACACGAGAAGTTTTTTTTTGGCGTTGGTGCAATNGGGTACG
TGACTTCTTCAATTATTTTATGCAAACCATGTTTAGACATGTTCAAACCT
CATCAGTAGACCTGACAACGATCAGAGTGCTTGTTCACTTTAATCATTTC
CACTCTAACAGTAGGAAACAGTAAAGAATAATTTTGAGGTTGAGAATGAA
AATCTACTAAGCATATTGAGCTTCAGCCAATTTCCGCTTTTTGAAAGACT
TGTCTGTATTTCTGATTTTCTGGAGTGTATTTTGAGCAAAGAAAACATTC
GTTGTTTTTTAGGAAGCGAAGAAGATCAACACAACGACAGAGTTGGAGAT
GTTTATGTTGGAANC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040727XLOC_040727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064947-exon-scaffold_427-1575043694:43147..43210TCONS_00064947-exon-scaffold_427-1575043694:43147..43210Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1575043694:42900..42962TCONS_00064947-exon-scaffold_427-1575043694:42900..42962Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1575043694:42752..42783TCONS_00064947-exon-scaffold_427-1575043694:42752..42783Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1575043694:38959..39056TCONS_00064947-exon-scaffold_427-1575043694:38959..39056Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1575043694:37896..37948TCONS_00064947-exon-scaffold_427-1575043694:37896..37948Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1510915933:43147..43210TCONS_00064947-exon-scaffold_427-1510915933:43147..43210Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1510915933:42900..42962TCONS_00064947-exon-scaffold_427-1510915933:42900..42962Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1510915933:42752..42783TCONS_00064947-exon-scaffold_427-1510915933:42752..42783Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1510915933:38959..39056TCONS_00064947-exon-scaffold_427-1510915933:38959..39056Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1510915933:37896..37948TCONS_00064947-exon-scaffold_427-1510915933:37896..37948Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1491911889:43147..43210TCONS_00064947-exon-scaffold_427-1491911889:43147..43210Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1491911889:42900..42962TCONS_00064947-exon-scaffold_427-1491911889:42900..42962Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1491911889:42752..42783TCONS_00064947-exon-scaffold_427-1491911889:42752..42783Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1491911889:38959..39056TCONS_00064947-exon-scaffold_427-1491911889:38959..39056Clytia hemisphaericaexon
TCONS_00064947-exon-scaffold_427-1491911889:37896..37948TCONS_00064947-exon-scaffold_427-1491911889:37896..37948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:37896..43210 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.22523	0	0	6.96515	4.90907	13.7971	16.1179	13.3807	10.9924	16.1375	18.5052	14.8962	16.6965	10.7329	18.1762	15.1861	11.0729	8.84956	15.6622	8.62	0	1.10956	0	23.7067	12.8936	0	0	1.45337	0
Blast
[Close]
BLAST of TCONS_00064947 vs. Swiss-Prot (Human)
Match: ZNT9 (Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.776e-32
Identity = 52/101 (51.49%), Postives = 78/101 (77.23%), Query Frame = 3 
Query:    6 LLGFVAIFLIQRNADSLVGRTIDPDRLRRIINVLENDIMVRSIHDVKATDMGIDTIRFKAEINFDGREITRVHLNRLDIDVLLREAKKINTTTELEMFMLE 308
            LLG V+ FLI  N ++L+GR+I P++++R+  +LEND  VR+IHDVKATD+G+  +RFKAE++FDGR +TR +L + D D +L+E +++ T  ELE FML+
Sbjct:  433 LLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKATDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLK 533
The following BLAST results are available for this feature:
BLAST of TCONS_00064947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNT93.776e-3251.49Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1... [more]
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