TCONS_00064948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064948
Unique NameTCONS_00064948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064948 ID=TCONS_00064948|Name=TCONS_00064948|organism=Clytia hemisphaerica|type=transcript|length=528bp
CAGCTTTGTTGGGATTTGTGGCCATTTTTTTGATTCAAAGAAATGCTGAC
TCATTGGTCGGAAGAACGATAGATCCTGACCGTTTGCGTCGCATCATCAA
TGTTTTGGAGAACGACATCATGGTCAGGTCCATACATGATGTCAAAGCCA
CTGATATGGGCATCGATACTATTCGATTCAAAGCAGAAATCAATTTCGAT
GGTCGTGAAATCACGAGGGTTCATTTAAATCGTCTCGATATAGACGTGTT
GCTCAGGGAAGCGAAGAAGATCAACACAACGACAGAGTTGGAGATGTTTA
TGTTGGAACACGGTGAACAGATCATCGATGTCCTCGGAACTCAAGTCGAT
CGCATCGAACGAAACATCAAAAGTAAATCACCTGAAGTCAGGCACATCGA
TCTCGAAatcttatgatgacgtcatgcaTTTTAATCTTCCacttattttt
ttgttatacTTGTACATAGGTTTTATACATTATGAATTACATTGATAATA
ATATGCCAAAATAATGCCAAAAACcaac
Run BLAST on NCBI

protein sequence of TCONS_00064948-protein

>TCONS_00064948-protein ID=TCONS_00064948-protein|Name=TCONS_00064948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
ALLGFVAIFLIQRNADSLVGRTIDPDRLRRIINVLENDIMVRSIHDVKAT
DMGIDTIRFKAEINFDGREITRVHLNRLDIDVLLREAKKINTTTELEMFM
LEHGEQIIDVLGTQVDRIERNIKSKSPEVRHIDLEIL
Run BLAST on NCBI

transcript from alignment at scaffold_427:38432..43210-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064948 ID=TCONS_00064948|Name=TCONS_00064948|organism=Clytia hemisphaerica|type=transcript|length=4779bp|location=Sequence derived from alignment at scaffold_427:38432..43210- (Clytia hemisphaerica)
CAGCTTTGTTGGGATTTGTGGCCATTTTTTTGATTCAAAGAAATGCTGAC
TCATTGGTCGGAAGGTATACCTCAACTAATCATTGTATTTCATTTTATGA
TGGACATTTATCATCTCTGTCCTTGTTTCTCTAAATATTTACTCAGAAGA
AGAAGAATATTTCAAGCTTACCCTTATCAGTGACAGAGATCATCAAATCT
TTACATTGCTGTTGATTGTTATACAAGTGTGTATTTCTTTTTTAACAGAA
CGATAGATCCTGACCGTTTGCGTCGCATCATCAATGTTTTGGAGAACGAC
ATCATGGTCAGGTAAGTTCGAGTTGGTTTTAAATTTCATTTCTTTTACAT
TTTGTTGTGTTGGGCTGGCAGTGTTATTGATATATTTTGATTTGGGAAAA
TGCCGACGCTTCATATTTTTCGTTTAGGTCCATACATGATGTCAAAGCCA
CTGATATGGGTATGTCTGTTTGAGTTTTTTGGACCTACCCCGGTGGGGTG
GAGGTCCTATAAATTAACCTGTGTTCGTCCGTTCGTCTGTTACCAACTTT
TCTCAGGATTGAATCATAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGGATTGAATCATAGGAATCTTTTGATTTTTAGTACAAAGGTGCA
AAATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAACAATTT
TTTGGGGTAAATTTGGGCTGAAAAACGGCTGAAAAACGGGTTTTTTGGAC
TTTGTGAAAAATTGGATCATTAATCTTTTCTGATTTTTTGCATGAAAGTA
GGGTACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTTGAAAAAAAAT
TTTGTTGACTCAAAAAATGTATGTTTGTCTATAAGAATTACTATTAATAA
GCATACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGAGATGGA
TGTTTTTTTGCTCACGAGAGCTTACTTTTGAAGAATATGTGTGTTTAGAC
ATGAAATTTTGGTTGCTTGGCGTGTTTTTATAGAGAAACTGGCCAAATTC
GATATTTTTTTATAAGCACACTTTCAATTACTTAGGTATTAGCTTTTCTC
GAGATTGGCTCTTTCATTCTTTACGATTTTTTGCACAAAGATGCATAACT
ATAATCCCCCGAATGTGACAGAACCCGATTTTCGAAAAACAATGTTTTTG
AGCAAATTTGGGCCAAAAAACGGCTAAAAAACGGGCTTTTTGGACTTTGT
GAAATATTGGATCATTGTTTTTTTTCAGATTATTTTGCATGAAAGTAGGT
AAACTATGGCTCAAGCAGATTTTCGTTAAAAAAAAAATTTTCAACTAAAA
AAAACGCATCTTTATCTATAAGAATCACTATTAATAAGCATACATCAATG
TTCTTAGCCAAATTACTAATTTTTTTGATGAGATAGATGTCTTTTTTGCT
CACGAAGTCTTGAATATGAAAGAATATCTCAAGAGTAAGAAATTTTGGTT
ACTAAACGTTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCA
CTATTTGTGTTCTGAATGATTGTTTAACGGTCATGCTCACGTAGATATCA
ATTATAGGTGAATTGATAATATGCGAGTTGCGAGTTGGTCCCGCGAGTTG
CGAGTTGCTATCAAATATGCGAGTTGCGAGTTGGTTTTTGCGAGTTGCGA
GTTACGAGTTGCTATTTTAACCAAATAAAAGTGCGAGTTGTGAGTTGAAA
ATTTCATGTTAAGACATCAAAATCGCGAGTTGCAGATTAAAATCACGAGT
TGCAGATTAAAATCGCGAGTTGAAAAATCAAAAGTGCGAGTTGAAAATTA
AAATCGCGAGTTGCAAATTAAAATCGCGAGTTGAAAAATCAAAAGTGCGA
GTTGAAAATTAAAATCGCGAGTTGCAAATTAAAATCGCGAGTTGCAAATT
AAAATCGCGAGTTGAAAATTGAAATCGCAAGTTGCAAATTAAGATCGCGA
GTTGCAAATTAAAATTGACAGTTGAAATGAAAATTTGTTTTCGTACTTTC
TTAATTATATGAATTTCGCATTTTTGCAGTTTGATTATTGTCTTTATTTT
GCAGAAATACGGTATATTTTGAGGGTAAAGAAATATTTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATT
TTTTTAGACCATCAAGCGTCTGGTTTTCTGAGTTACGATAGTGAATAGTG
CTTATCCATATGAAATAATGCGCGCGCGTGCGGGGTTTAAAAAGCAGTAC
GGCACAGCACAGGGCGGGGGTTTATTCGTGAGTGTACCTGTGTGTTGATA
GCTTAAGGTTAAGCAGCGTCCAGCGCGGAATTCGAAGGTTAACTACTGGT
TTTTCAAGAAAAAAATCCAAACTCCCACTGTTGAGAGGAAGTCGAAGCCA
CTCCATTTTTTTCGGTTCAAAAAAAAAATTATTTTTCCCGGTATTTTGAT
TTTATTACGCGTAAACACTCAACTTGAAGTGAATCAAAACATTCCTCTGA
TATTTTTAAACGAATACGCAGAATCAGCATACCTATTTTAAATGCTCCTA
AAAGTAGTCGTTTACTTTTTCTAAGTAGATTTTCCCATTAAAGGATAGAA
ATTCTGATAGTAATTCTCTATATTCTCTTACTAGTAAATTTACTATGGAT
TGCTCCACGTTTTGGTCTATTCGAAAAACCACAAGCGATTATTCAATCAA
AAGTGTTCGGATAAACATGGTGTTAAATTTATTATATAAGTGTAGTCGGT
CAGTGTATAAAACAATGCTGAAGGTGAGGCCACCCGGAAGGGCGGCCACA
TTCGTTCGTAATAAACTTGCGTTGCAAGGGCCCAGTGGATCGGTGAGGCG
GGATTTGAGGTCAGCAGATCTCAGTGTGCAGTTCCACTGTTGCGATAAAA
GTGTCGGGATTCTCAAAGTAGCGCAAGGACATGACAGAACGAATGAGAGC
TATCGAGCCAATGCTCACCACGAATGAACGAGTTCAACTATTATTTCCAA
TCTAGGATTTTCTTTCTTTATTCTATCGTGAATATTTATTTTACCACCTA
CTATATGAAATTTTAAGATTCGAATTACACCAGTTTCACAGTATAAATAG
TTTTCTATCAGCTTTTATGCTTCCAATACAAAGCTTTTCTCCAATTTTGA
ACCTAGACATGGCGCCCTAACAACAAAATTATCCACACTGGTTGAAACTC
ACACATTAAAATTTGCAACTCGCACTTTTGATTTTTCAACTCGCGATTTT
AATTTGCAACTCGCGATTTTAATCTGCAACTCGCGATTTTTATGTCTTAA
CGTGAAATTTCCAACTCGCAACTCGCACTTTTATTTGGTTAAAATAGCAA
CTCGTAACTCGCAACTCGCAAAAACCAACTTGCAACTCGCATATTTGATA
GCAACTCGCAACTCGCAACTCGTAGGACCAACTCGCAACTCATTTGTTAA
AAATCCACAATTATAGCAGATTATATATGTGTTAAATGCATAACCAGGTA
GGTCCATAAAAGTATCACTTGTTTTTTCATGAAGGATTTCCTTCTTTGCG
CATCAAATGGGGAAAAATTTAAACTCAATTTCTCATTTGTAAGGGGATTT
TAGTGTGGTCGATGAGTAGAGGGTGGCTAAAACACAGTCTTTTTTTAATT
CTAAAACAAGGGAAATTTCATTCATCATTCTCAAAATACGTGAATTATTG
TATTTGGGCTCATCGAATACTCGTATTACATTATTGATTGATTTCGTTTT
CTAGCATTTCTTTGCACTGAAACCCTACATATTGATAAAAATGTATCAAA
GCAATATAACCAGAAATTTCGCGCGGATAAATTTTAGCGATCTGGCGATT
CAGCGTGTTTTAGCGAGATTTATTTTAGCGAAAATAGGGAAAACTCGCTA
AAACGCTAAAATTAGTCTCGCTAAAATTTCTACGATTAAAGTAGTAGTTT
TAGTAGTAAGTAGTTTTTCTGTAACTTTTGTTTTCATTAATATTTTGGTA
TCGACTAAAAAGTGATCCAATGATAAGCAGTCGAAGGATCTTTTCATTTT
ACAGGCATCGATACTATTCGATTCAAAGCAGAAATCAATTTCGATGGTCG
TGAAATCACGAGGGTTCATTTAAATCGTCTCGATATAGACGTGTTGCTCA
GGGTACGTGACTTCTTCAATTATTTTATGCAAACCATGTTTAGACATGTT
CAAACCTCAGTAGACCTGACAACGATCAGAGTGCTTGTTCACTTTAATCA
TTTCCACTCTAACAATAGGAAACAGTAAAGAATAATTTTGAGGTTGAAAA
TGAAAATCTACTAAGCATATTGAGCTTCAGCCAATTTCCGCTTTTTGAAA
GACTTGTCTGTATTTCAGGAGTGTATTTTGAGCAAAGAAAACATTCGTTG
TTTTTTAGGAAGCGAAGAAGATCAACACAACGACAGAGTTGGAGATGTTT
ATGTTGGAACACGGTGAACAGATCATCGATGTCCTCGGAACTCAAGTCGA
TCGCATCGAACGAAACATCAAAAGTAAATCACCTGAAGTCAGGCACATCG
ATCTCGAAATCTTATGATGACGTCATGCATTTTAATCTTCCACTTATTTT
TTTGTTATACTTGTACATAGGTTTTATACATTATGAATTACATTGATAAT
AATATGCCAAAATAATGCCAAAAACCAAC

Coding sequence (CDS) from alignment at scaffold_427:38432..43210-

>TCONS_00064948 ID=TCONS_00064948|Name=TCONS_00064948|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_427:38432..43210- (Clytia hemisphaerica)
GAAGCGAAGAAGATCAACACAACGACAGAGTTGGAGATGTTTATGTTGGA
ACACGGTGAACAGATCATCGATGTCCTCGGAACTCAAGTCGATCGCATCG
AACGAAACATCAAAAGTAAATCACCTGAAGTCAGGCACATCGATCTCGAA
ATCTTATGAGCATCGATACTATTCGATTCAAAGCAGAAATCAATTTCGAT
GGTCGTGAAATCACGAGGGTTCATTTAAATCGTCTCGATATAGACGTGTT
GCTCAGGGTCCATACATGATGTCAAAGCCACTGATATGGAACGATAGATC
CTGACCGTTTGCGTCGCATCATCAATGTTTTGGAGAACGACATCATGGTC
AGGCTTTGTTGGGATTTGTGGCCATTTTTTTGATTCAAAGAAATGCTGAC
TCATTGGTCGGAAGGAAGCGAAGAAGATCAACACAACGACAGAGTTGGAG
ATGTTTATGTTGGAACACGGTGAACAGATCATCGATGTCCTCGGAACTCA
AGTCGATCGCATCGAACGAAACATCAAAAGTAAATCACCTGAAGTCAGGC
ACATCGATCTCGAAATCTTATGAGCATCGATACTATTCGATTCAAAGCAG
AAATCAATTTCGATGGTCGTGAAATCACGAGGGTTCATTTAAATCGTCTC
GATATAGACGTGTTGCTCAGGGTCCATACATGATGTCAAAGCCACTGATA
TGGAACGATAGATCCTGACCGTTTGCGTCGCATCATCAATGTTTTGGAGA
ACGACATCATGGTCAGGCTTTGTTGGGATTTGTGGCCATTTTTTTGATTC
AAAGAAATGCTGACTCATTGGTCGGAAGGAAGCGAAGAAGATCAACACAA
CGACAGAGTTGGAGATGTTTATGTTGGAACACGGTGAACAGATCATCGAT
GTCCTCGGAACTCAAGTCGATCGCATCGAACGAAACATCAAAAGTAAATC
ACCTGAAGTCAGGCACATCGATCTCGAAATCTTATGAGCATCGATACTAT
TCGATTCAAAGCAGAAATCAATTTCGATGGTCGTGAAATCACGAGGGTTC
ATTTAAATCGTCTCGATATAGACGTGTTGCTCAGGGTCCATACATGATGT
CAAAGCCACTGATATGGAACGATAGATCCTGACCGTTTGCGTCGCATCAT
CAATGTTTTGGAGAACGACATCATGGTCAGGCTTTGTTGGGATTTGTGGC
CATTTTTTTGATTCAAAGAAATGCTGACTCATTGGTCGGAAGGAAGCGAA
GAAGATCAACACAACGACAGAGTTGGAGATGTTTATGTTGGAACACGGTG
AACAGATCATCGATGTCCTCGGAACTCAAGTCGATCGCATCGAACGAAAC
ATCAAAAGTAAATCACCTGAAGTCAGGCACATCGATCTCGAAATCTTATG
AGCATCGATACTATTCGATTCAAAGCAGAAATCAATTTCGATGGTCGTGA
AATCACGAGGGTTCATTTAAATCGTCTCGATATAGACGTGTTGCTCAGGG
TCCATACATGATGTCAAAGCCACTGATATGGAACGATAGATCCTGACCGT
TTGCGTCGCATCATCAATGTTTTGGAGAACGACATCATGGTCAGGCTTTG
TTGGGATTTGTGGCCATTTTTTTGATTCAAAGAAATGCTGACTCATTGGT
CGGAAGGAAGCGAAGAAGATCAACACAACGACAGAGTTGGAGATGTTTAT
GTTGGAACACGGTGAACAGATCATCGATGTCCTCGGAACTCAAGTCGATC
GCATCGAACGAAACATCAAAAGTAAATCACCTGAAGTCAGGCACATCGAT
CTCGAAATCTTATGAGCATCGATACTATTCGATTCAAAGCAGAAATCAAT
TTCGATGGTCGTGAAATCACGAGGGTTCATTTAAATCGTCTCGATATAGA
CGTGTTGCTCAGGGTCCATACATGATGTCAAAGCCACTGATATGGAACGA
TAGATCCTGACCGTTTGCGTCGCATCATCAATGTTTTGGAGAACGACATC
ATGGTCAGGCTTTGTTGGGATTTGTGGCCATTTTTTTGATTCAAAGAAAT
GCTGACTCATTGGTCGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040727XLOC_040727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064948-exon-scaffold_427-1575043694:43147..43210TCONS_00064948-exon-scaffold_427-1575043694:43147..43210Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1575043694:42900..42962TCONS_00064948-exon-scaffold_427-1575043694:42900..42962Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1575043694:42752..42783TCONS_00064948-exon-scaffold_427-1575043694:42752..42783Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1575043694:38959..39056TCONS_00064948-exon-scaffold_427-1575043694:38959..39056Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1575043694:38432..38702TCONS_00064948-exon-scaffold_427-1575043694:38432..38702Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1510915933:43147..43210TCONS_00064948-exon-scaffold_427-1510915933:43147..43210Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1510915933:42900..42962TCONS_00064948-exon-scaffold_427-1510915933:42900..42962Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1510915933:42752..42783TCONS_00064948-exon-scaffold_427-1510915933:42752..42783Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1510915933:38959..39056TCONS_00064948-exon-scaffold_427-1510915933:38959..39056Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1510915933:38432..38702TCONS_00064948-exon-scaffold_427-1510915933:38432..38702Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1491911889:43147..43210TCONS_00064948-exon-scaffold_427-1491911889:43147..43210Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1491911889:42900..42962TCONS_00064948-exon-scaffold_427-1491911889:42900..42962Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1491911889:42752..42783TCONS_00064948-exon-scaffold_427-1491911889:42752..42783Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1491911889:38959..39056TCONS_00064948-exon-scaffold_427-1491911889:38959..39056Clytia hemisphaericaexon
TCONS_00064948-exon-scaffold_427-1491911889:38432..38702TCONS_00064948-exon-scaffold_427-1491911889:38432..38702Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064948-proteinTCONS_00064948-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:38432..43210 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.26	32.6986	35.1328	41.2709	55.5362	48.222	52.1088	59.951	51.712	51.3109	44.6913	49.542	51.4217	62.8457	35.1229	39.3785	45.7007	42.9591	43.7774	45.2666	40.604	41.697	50.018	43.9382	61.8664	57.086	38.8871	45.8956	50.7675	55.5887
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027470Cation_efflux_CTD
Blast
[Close]
BLAST of TCONS_00064948 vs. Swiss-Prot (Human)
Match: ZNT9 (Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.393e-50
Identity = 75/136 (55.15%), Postives = 108/136 (79.41%), Query Frame = 3 
Query:    6 LLGFVAIFLIQRNADSLVGRTIDPDRLRRIINVLENDIMVRSIHDVKATDMGIDTIRFKAEINFDGREITRVHLNRLDIDVLLREAKKINTTTELEMFMLEHGEQIIDVLGTQVDRIERNIKSKSPEVRHIDLEIL 413
            LLG V+ FLI  N ++L+GR+I P++++R+  +LEND  VR+IHDVKATD+G+  +RFKAE++FDGR +TR +L + D D +L+E +++ T  ELE FML+HGE IID LG +VDR+E+ +K ++PEVRH+DLEIL
Sbjct:  433 LLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKATDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIIDTLGAEVDRLEKELKKRNPEVRHVDLEIL 568
The following BLAST results are available for this feature:
BLAST of TCONS_00064948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNT93.393e-5055.15Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1... [more]
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