TCONS_00064963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064963
Unique NameTCONS_00064963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064963 ID=TCONS_00064963|Name=TCONS_00064963|organism=Clytia hemisphaerica|type=transcript|length=620bp
NNTGACTTTCAGACCGAATACAAGGCTTACAGAAACAGAAACAATGTCTC
CAAAACTTTCTCCACAAACCATGACTCATACTATTGTGAAAATTTTGCAT
TCTCTTGCATTACGTTACTCCTTGAGAAAAGTCCGTCTACTTTGCATTCA
TACAAATTACTACATTATTTGGCTGATTCCAAGTTCGGTTTCATGTTTGA
AAGACAAGTGCCCAACTTTCAATTGTGTAAACAAACGGCCGACATTTTGT
ACCCAACCAGTGTCCAGTTTTCCGTTCAACGGTTGTGTACGACCAACATT
GAGTCTTTTGATCAAGAAGTCTATGCTTTGTATGAACGCTTGCTGGATAG
TGGTACATTTGATGAATCATACTCATTTGCAAAACTTCACAGTCTACCGG
AAAGTAACATCACTTTGCAGAAGCTTCGGCACGAACTGAAATTACTACGC
AACAAGGAATGCTGGGTAGATTTGGAATCGCGTTGTAATTTTTGGAGATA
TGCACATCGCACGTTCACAGAAATGGATTGTCTTCCTGAACTTTCTGCTC
AATTTTTCGAGCGGCTTCAATTAATAAAGTCGAATGAAACATCAACAAAG
ACAAGAAAAACATCATTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_427:299033..303058-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064963 ID=TCONS_00064963|Name=TCONS_00064963|organism=Clytia hemisphaerica|type=transcript|length=4026bp|location=Sequence derived from alignment at scaffold_427:299033..303058- (Clytia hemisphaerica)
NNTGACTTTCAGACCGAATACAAGGCTTACAGAAACAGAAACAATGTCTC
CAAAACTTTCTCCACAAACCATGACTCATACTATTGTGAAAATTTTGCAT
TCTCTTGCATTACGTTACTCCTTGAGAAAAGTCCGTCTACTTTGCATTCA
TACAAATTACTACATTATTTGGCTGATTCCAAGTTCGGTTTCATGTTTGA
AAGACAAGGTGAGTTTGATTTGTTCATGCTCGAAGAAGGATGTTTTTTTA
CAAACACCAAATTTGTCGGCCTTAATGAAATTAGCAAGTTTATGTTTTGG
AGGTAAGTCGATATAAAGCAAAGTTGAAATGTCTCAAATATTGCGGTCCA
CCTTGCTCGACAACGGTAAAAACACCAATGTCGTCATCTGTTTAGGTAAG
CGAAGGTGATATAGAACCGCACATCAACTATCGACTTTGTTTTTGCGCCG
ACTTACGACACTTACCCTCACCCTCGATATCCTCCGATACATAAACTTGC
TTTTCTCAAAGCAAATTCGGGAAAAATCCCACTCCAATGTAACGACTTCC
CATGTTTGCTTGGAGTTTTTCTTTTAGATTATTTCGCGTCCACATTTAGA
TTGCATGAACTTTCGACAACTTTATAGTTTTGTGCGGATTTTTGTCGATT
TTTTCGACCTTCATGAAAAGGATTGTACCTCATTCGGTGAATTCTTTGGG
CAGTGGGAGGCCTTTAATCAAAGACATATCACCAACCCGTTTGTTTTAAG
AATTCATAAGAATTTACTCAAGCCAAATACCTGAAAAGATTCTTTGACAA
TAAATTTTTTTAATTTTTGTCATTTTCTCAGTGCCCAACTTTCAATTGTG
TAAACAAACGGCCGACATTTTGTACCCAACCAGTGTCCAGTTTTCCGTTC
AACGGTTGTGTACGACCAACATTGAGTCTTTTGATCAAGAAGTCTATGCT
TTGTATGAACGCTTGCTGGATAGTGGTACATTTGATGAATCATACTCATT
TGCAAAACTTCACAGTCTACCGGAAAGTAACATCACTTTGCAGAAGGTTT
GTTTCATTTAACCGTCTATAATTCGTCTAATACAGTAATATGGGTGTTAT
ATGATAATACAATAATTGTTACGGGATAATATCAGTTTGATTACATTTTT
GTCCGAATTACCTTAAGCGGATTTATTTTTGCGTTTTTCGAGAATTTTCA
TATTTTCACGGAAAAGTTTGGAGACCCTTGATTCGCAAATTCCACGCGAA
TTCTTTAAATTCTTGTCTCGCAAAAATTAATCCACGTGAAAATTAATCCA
CCTAATTCAGCTCCAAAAAGAGGGAAAATGGACTGTTTGGTTCTTTACAT
TTTAATTCTGAACGTTTTTTCCATGAACTCATTTCATCAAAATATCGCTT
CCTGAAGGTTCTTTGTCGGTGCCCAAATGTGAAAAAACAGCCACAAGATG
GATTCTATACTAAATTCATGAGAGATTTATTAAAGCTTGAATGCAACCAA
ATGAAATGTTAAGCCCATAAAGTCAACTAAAAATGTTGAAAATAAAATAG
AATTGAAGATTTCCTTCAAAATAAACAATCCCAAAATAATCTTTTATTGA
ATTATGCCAAGAACTCATTCGGCGACTTTTATCGCAAAAGACGAATCTTT
GTGTCGACCAACCAACTATCTCGTACTTTCGCTTTTCACTATATTCTTTT
CTATCTTTCTACTCCAAAATATAATAATTTCACCTTTTAGCTTCGGCACG
AACTGAAATTACTACGCAACAAGGAATGCTGGGTAGATTTGGAATCGCGT
TGTAATTTTTGGAGATATGCACATCGCACGTTCACAGAAATGGATTGTCT
TCCTGAACTTTCTGCTCAATTTTTCGAGGTAAAAATTTTTATGTTTTTTA
TGTTTTGATTTAGATTTGCTCTTTTTTCAATTTTCTTTAAAATTATTTTG
TTTTGTTTTGAAAAGAATTCGAATGTCATTAGTTATTAAATATGATTGTC
AATTACATTCGAAAAGACATAAAAGAAAAGAGAAAAAAAGAGCGAGCGAG
CAAGTCAAGGCAGAAATTAAAATTGGGCTCTTCCAGAAAAAATCCGTTCA
TGGGGGGTGGAGGATATTATTTTTTTCATGAATTACCCCTGGACATTTTG
ATTTTTAACACCATGGACATGGGTTATACCCCTGGACAAACATTAAATCA
ACCCCGTGGACACAAAAAATTACCCCTGGACATTGCAATTGTTTGGTATT
TTTTCAATACCCCTGGACAATTCATCCTCCACCCCCATGAACGGATTTTT
TCTGGAAGAGCCCATTGCTTAAATGTAGATGGGTGTTTAATTTCAAAACA
AAGGCCGAACGAAGTCTAAACCAGGCTCTATCAACAAAAACATTGCGAAA
ACGAAAGTAACACACGGACAGACAGACAAACAAACAAAGTGACATACAGA
GTACGGCTATTAATATATAGACTAGACCACTAGACCTAATTTTTGTTTTA
TCTGTCGAAACATGAAGCACAATTCATTAAAACGAGGACTCTAGAAACGT
GCTTAGTAGTTAAAAACCATAGCCAACTGATAATTTTGTCAAATAAAGCA
TTGATTATTTAAAGTGACAACATGAATTTAGTAAAAGATGTTATAAAAAA
CAGAGTATACATCATTCAGGCAAAATATTTTATGAAAAAAATAATTGAGT
GCCCTTTTCAATACCGAGGAAAAATTTAGACCGAAAGTGAAATTTGCCAC
TCAATAAGTTTCTAAATTGACAAATACTAATCAAACCTGATTTATAGTTG
GATTAAATGAAAAATACTGCAAAATGCCCCTTGACCGACATTCGAAAAAA
CAAGGGATAATGTAAATCTCCTTTCCAAGCCAAAGTGTTTTCACTTTCAA
AACAGGCGAATTTAACCAGCGAATAAATGACAAAAAGTTTTACATGAATC
AATTTTCACCACATACAGCAACATTCATTTGATCGACCAACATTCGAAAA
AACAAAGGATCATACAAATCATCTTTCCAAACCATGATATTTCTTTTTTC
TTTCAAAACAGGCGAACCTTTTGTCTTATAATCAGTGACCAAAAGTCTGA
CGCTTTGTGAAGTGTTAGTTCGCTGAACACCTGCTTTTAAAATGGATATT
ACCTCATAGTCGCCATACAATTCTGTCCAAGTGGTGACTAACCCGTCCAA
ATCCAAACCAGCATTGAAACACCATTGCAGTGAGTTTATAACTGTCGTGT
AAAGGTCAATACCTGCACCTCCCAGAGTCAAAATTACATTTAATGTGGTA
TAATCATTCAAACATAAATGTTTAAGACGACCGAAAAATTCGATCTTTTT
ATAGTTAACATTTTTCACCAAATCTAGCACGACTTTCATTAGGTGCTTAT
TTGTTATTGGTAGCCTTGCAAATAAAAATTGTTGTTTCGGTACAAAGGCT
TTTAAAAGTGAGCAAAAATAGCCTTCAGATATACTATTAGGAGCACGACC
TCCATTACAATGTATTAAAATATTATAATGTTTTTCATTTTGCAGTTCTT
CTAATGCATTTGCTTTCTTTTTCTCGTCATCTTTCCTCGCATAATAACTG
TTGATAATGAGTAATTGGTAGTGCAGATATACGATAGTTTGTTTGATAGC
CCCATTGCCTGAAGGGAGTCTTGATATAAATACAAGAAAATCACTAATCT
CGATCATCGTCAACGCAGCCACTTCATTTTCCAAATATAACATAAGGTTA
TTTTCTTTTAGTTGAATCGATCTTTTTCTGAGATGTGAATACATCCAAAC
CTCTGTACATGGTATTCGCAGTAACTGTGAGGCGAGCTGGTATAGGTTTG
TCGGGTCATAGTTTTCAACATTGTTCCAAAAGTTTCTAGACACTCCGATT
GAGCTGAAGTCAAGAATCACGGTCACATTTCTTGTTTTCAAACAATAAGT
CCTCTGTTTTTGACCAGCGGCTTCAATTAATAAAGTCGAATGAAACATCA
ACAAAGACAAGAAAAACATCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040734XLOC_040734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064963-exon-scaffold_427-1575043694:302851..303058TCONS_00064963-exon-scaffold_427-1575043694:302851..303058Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1575043694:302013..302227TCONS_00064963-exon-scaffold_427-1575043694:302013..302227Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1575043694:301181..301318TCONS_00064963-exon-scaffold_427-1575043694:301181..301318Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1575043694:299033..299091TCONS_00064963-exon-scaffold_427-1575043694:299033..299091Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1510915933:302851..303058TCONS_00064963-exon-scaffold_427-1510915933:302851..303058Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1510915933:302013..302227TCONS_00064963-exon-scaffold_427-1510915933:302013..302227Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1510915933:301181..301318TCONS_00064963-exon-scaffold_427-1510915933:301181..301318Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1510915933:299033..299091TCONS_00064963-exon-scaffold_427-1510915933:299033..299091Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1491911889:302851..303058TCONS_00064963-exon-scaffold_427-1491911889:302851..303058Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1491911889:302013..302227TCONS_00064963-exon-scaffold_427-1491911889:302013..302227Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1491911889:301181..301318TCONS_00064963-exon-scaffold_427-1491911889:301181..301318Clytia hemisphaericaexon
TCONS_00064963-exon-scaffold_427-1491911889:299033..299091TCONS_00064963-exon-scaffold_427-1491911889:299033..299091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:299033..303058 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197046	0.391474	0	0	0.404866	0.701449	0.961095	0.750077	0.435134	0	0.530105	1.02703	0.692633	1.96332	0.243893	0	1.22878	0.517099	0	0	0.819508	0	0	0.13184	0	0.24923	0.656204	0	0	0.44743
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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