TCONS_00064973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064973
Unique NameTCONS_00064973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064973 ID=TCONS_00064973|Name=TCONS_00064973|organism=Clytia hemisphaerica|type=transcript|length=1827bp
AACAAATACTACTTTTAGTCCATGAGTTTTTACCCGAATCATTTTTGCAC
TTTAactgtttaaaatgcattttatcAACATAAGCACATATTAGAAGCAA
TGGCTACACTTTCAAGTACAGTGACTCCAATTCTGAAGTATTGGAATCAA
GAGGAAAAGTTCTCATCTGTTGCAAAAGCCAGGTCATCGAATGATGGATC
ATTTTTGGCACTAAATGTTGAGAACAATATTCTTGTTGTTGCTCATTGCA
GATGTTCAAAAGAAGATGTATTATCGACTGAGACAAACAAttTTGTTTGG
GGAGCTTCATCTTTGCACAGTGATAGAGTCTTGGATTCACCGACTCAAAG
TCAATTCTTATACATTGTTGATCACGAACTCAACATCACTGTATTTGAAT
TGAACATTTCAAAAGACACCTTGAACTATTCCATTGTCACTTTGATTGGC
TCTTCATTTTTACTGGCAACAAAAGATATACGAGAGCTTGGTGATTTATC
ACTAGTCTCAGCTTCAGTTGACAGTCAAGGGGAAACTCACTCAGTGATAT
GTCTTGTTAACAAGCAATACATTGCACAAATCATGATATCCAAAACAAAT
GAACCTTTTGTACAAGAGATGATGCAGGTTTGTAAGGAGGATGTCCTTGG
TTCGAATGATGTGACCCATGCAAAGAGAGTTGAAGATATCATTTTCTGTA
TATCTGAGCAGTTGGTCCTCTATGCTATTGCTGCACAAACTCTTGAAGTT
GTTTTACAGATGAATCTGCAAGATAAACTTCTTTTGTATGATGTGCAACA
CTTAGATGCCACCTTTGACTCAACTCAATTCAAACTGGTATTAATCGATG
AGTCCTTGCAGATCCATTCCATCCatattcacaaaagtttgttACTAGGC
AACTCACCAGATTCTTCCAACAAAAAGTGGCCAAATATATGGAGCTATAG
GGTTGGACATATGAGTGACAGCAAAAAGATTGGAAAGAGAAGGCGAAAAA
TGAAACATACTTCTATTGAAGTTTCAACTACACCAGCTGAAGAATCGATG
AGAGATCTTACGTGCGATAACTTGGTTGCTTCCAACACATCTATAATGAT
GATACTAAAACCTAAAAACAGACATGAATTAGAGCAGGAAAACAAACAAT
GCCTCGTTTACTTTAATACTATGGATAATACTTTCAATTCACTTGATCTG
GACACCGAAACATGTTTATGTTACAGCAATAATCCACATTTCCCAACTTT
GTTGATTTCCATCCACTCAATAACAATACCAACCTTTAATGCAAACCAAG
AACAACTAATTGATACtATTATTCAGTATAGTGGTATTGACCAAGCAGAG
GTGATTTGTAAAACCAACAATTGGGACCAATTCAGCATCCCATTGCATAC
TTTGGAAGTTGGGTTACAACACAGACAGTTCGAAACCGTTGCCTTCTTTT
TGAAAAGTCGAGAGAAAGTATTCACTCGATATTGGAGGAGTGTCGGTGAA
CTATCATCATCCTTCAACGCTGGTGGTGGTGGAAGTCCTTCAAAATCCTT
TACTTCACAAAGGTCGTACACTGAAAATATTAATTCTGATGAAATGGTAT
CTGCTATTGAAATGTTGATGAAATCGTTAAAATCCTGCTCAACTGGAAAA
CACaaacagaatttttttgaatcaCTTTTAAAGCTTTGTTTATCATACTT
TAACGATCTCATACAAGATGGAATTTTTGCATTGGAAATGGAATCTTACC
ATTCCAAAGAAGATCTACCCATATTGAGGTCGAACAGTACCACAAGTGAT
CCTGGAGAATATGGGTTCAATTTTCTN
Run BLAST on NCBI

transcript from alignment at scaffold_427:330992..340662-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064973 ID=TCONS_00064973|Name=TCONS_00064973|organism=Clytia hemisphaerica|type=transcript|length=9671bp|location=Sequence derived from alignment at scaffold_427:330992..340662- (Clytia hemisphaerica)
AACAAATACTACTTTTAGTCCATGAGTTTTTACCCGAATCATTTTTGCAC
TTTAACTGTTTAAAATGCATTTTATCAACATAAGCACATATTAGAAGCAA
TGGCTACACTTTCAAGTACAGTGACTCCAATTCTGAAGTATTGGAATCAA
GAGGAAAAGTTCTCATCTGTTGCAAAAGCCAGGTCATCGAATGATGGATC
ATTTTTGGCACTAAATGTTGAGAACAATATTCTTGTTGTTGCTCATTGCA
GATGTTCAAAAGAAGATGTATTATCGACTGAGACAAACAAGTAAGAGCAT
TAAATAGTTCAATCATAAAGTGTATATTTTTTTTCTTTGGACAAATTTGT
TTGCTAAAATTTAAATTTAAACCAGTGTGGAATCCATGGCAAAGATATTT
TGAGGATCAAGAAGGTTACACCCAATTGAGGACATTTTCACGCCAAATTT
ATTTGGCGTACTGTGCATGAATTCCAGACTGGAATTTAAAAGCTTATTGT
ATTGCTATCATTGGTGCGTGCCAAAGAGAAATCGTGTATTATTTTTTAAA
CTCAAATCAAATGACTTTGGAGGTTTGGTGAAATTGTTGCCAAATTGCCG
TCCCATGTTTTTTCAAATAGTCCTAAGTTGGAGCAGTTGACAGTATAGAA
AAACAGGATGGACCGGTCTATCGTTTGTCTATCTACGACCCTGTCGACGC
ATCAGTGATGAGACAGTCCAGTGTTTTATCTGATGCCAAAAAATAGACCT
TTTTTCAAAAAGGACGTCCTGTTGAATAATTATGTAGTCCAGCCATAAAA
ACAATGATAGAGCCATGCATAATTACTGTATCATGCATATTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTCATGCATATTGTAATAATTATGCATGGTT
TTATCATTGTTTTTCTGCTGGACTACATAATTATTCAACAGGGTGGCCTC
TTTGAAAAAAGGTCTATATCCCTCAGCCACACCGAAAACCTTTTGTCTTT
TAAAATACTTTGAGGATGTGGTTCAGCCAATGAAATAGAATTTGTCACAT
TAGCTATATTAGCAAGCATCGCTGGTCAAAATATTGAAATTTTTAAAAAA
GCGCGCGAAAAACGTGCCCCGAACACTGGAAGTACTCCGGAATCTTCTGG
TGAAGACAGCAGTTTTTGCATCGTGCGTTTCCGGAGTGCTGGGAGGGTCC
TGACACATGGAGCAAGTCACTCGAAAGACGCACCGTACTCAAGTCCGGTG
TTGAGATTGTCCGGTGTTAAAAACAGTGAGGCTGGAACTTCGATTTTTTG
AGGATTACAATTTCACCAGCTTTTTAGCGATTTTTGCCTCGCTTACCCAA
ATCTTGCAACCTCTTTGCCTTAAGGAAGATAGAAATTAGAGTTTTTCAGC
GTTCCAAAAAAAACGCATAGCAGAAACTTTTTCATCTTCACAGGATCGAT
TCTCAACAACAAAATACATCTTTTGGTCTTTGCTTTGTAGTGAGGTCTGT
TAGCACAAAAATACTTCAGATGGTGATTAAAGCATGAAATTTGGCACAGA
TGATCCTTAGAGGGTTTAAAACTTAATTTTAAACATTAACACCAAATTTT
GCCACCTGGCCATCTGCCAGATGACGTCATCAGGTGGCTTAGCAAAAATT
TATTTTTTTGAAAATATTTAAAATCTGATGGTATCAGCAGAAAGAGCATG
AAATGCTGATGAAAATGGAGGTATAAAACATGCCTTCAAAATCTTCCTAT
CAAAAGTTATGAAGGTTTAAAGTTTAGTGATGACGTCATCATAAGCCTTT
CCAGGTAAAACCTGAAATCCCGTAATAACGGAACTAGTTGACCAAATTTA
GTGTTTTATACATGAATCCATGTCAAAATTTGAAGTTCCATCTGATGCTT
GGGTCTAAACAACATAGGAAGGCTTAAAATACCTAAAAAAATTAGTTGGT
TGTACACTGTGCTCCTGAAGGGAGAACGCTGCGTTGCTGATTTGCCTTGT
AAAGCTCAAAATCTAAGTTTTAGTATTCTGTATTTCAACATCGGAATCAG
AAAAAGCAATGAATTTTGATATGAATTCATGTATAAAACATGAAATTTGG
TCAATTTGTACCAAAATTACGAGGTTTTTAAGTTTTGCCTGGAAAGGCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTTTGATATATATATATCAAA
CACTTTTATACTATTATCATATCAGTAAAATAGTATGTATTTTATATATT
ATTTATGTAACATCAGCGGTCAACATCAATGCTCTCTAAGGAATCGAGTT
TCTAAAACTCAAAAATACAAAGCAGGACAGGAATTTTATATATACACGTT
GCGCATCCCTTATATCAGAACATATAAGAGGGGATGTGTGCAGCGTAGAT
GCAATGTCATATCAATAGAATTTTTGCTAGGCCTGATACCATTTTGACAC
AAACGGTGAAAACATTACGTAATGACTCCACACAATAGCCTGATAGTAGA
CACTTTTCATGTACTAGATATTAACTTATCATTGTTTTGCGAGCAGAAAA
CTGATTCACAAGCTTTTAATAAACATTTTTGCCAGCCATCTGATTTTATT
TTTTTCTTAGATGAACAATATGACTTCTTTTTCATTTTTATAGTTTTGTT
TGGGGAGCTTCATCTTTGCACAGTGATAGAGTCTTGGATTCACCGACTCA
AAGTCAATTCTTATACATTGTTGATCACGAACTCAACATCACTGTATTTG
AATTGAACATTTCAAAAGACACCTTGAACTATTCCATTGTCACTTTGATT
GGCTCTTCATTTTTACTGGCAACAAAAGGTATCTTTTAACATTTTATTTA
AATTTAAGATTTCTTGAAATGTCTGTAAAAATTGCAAAAATCAATTTTTT
TCTATTTGATGACAATGATTTTAGGTGTTGGATATATCTGATGAATTACC
ATCAATCAGTATTGATTTTCATGGGCCAATATGAAAAGTGAGGGGGGCTA
AAAAGTTGGGAAAAATTGGCTAATAAATATTTTTGGAGCTACCCCGGTGA
GGTGGAGGTCCTATAAATTAACCCATGTTCGTTCGTTAGTTAGTTAGTTA
GTTCGTTAGTTAGTTAGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTT
TTTTCTGATTTTTGGCACAAAGGTGCATGACCATAAACCCTCGAATGTGA
CGGAGCCCGAAAGTAGGGTACAATCATAGTTAAAAGATGGCTCAAGCAGA
TTTTTGCAAAAAAAATTTTTTGGCTCAAAAATCGCCTTTTTATCTATAAG
AACCACTTTTAATAAGAATACATCAATGTTCCTAGCCATATTATTATTAT
TATTATTTTTATTAGTTTTTTTTAAGATGAAAATGTCACGGTGGAGGGTA
ATGATTTTAGTTTTCTGTAAACACTTATTATTTTTTTGGCTGAAAAACGA
ATTTTTATCTATAAGAATCACTATTTATAAGCATAGATCAATGTTATTAG
CCAAATTATTTTTTTATTATTATTTTTTCTAACAGTAGAAAATGTCACGA
TAGAGTGCGACGGTTTGAGTTTTCTGGAAACCTTATTTATTAAGCTGTCA
TTTTTCTGATAGTGGTTTTTATAACGAATAATAGCTTTTTTATTTATTTT
TCAAAAATCTTTTTCAATAGTGTTGATAGTTTCTCTCAATAGATATGCTT
TCATTTTCTTTATTTTTTTGTATCTTGACCAGTTATGTCTTATGTGTTTC
ATTGTTTCAATGTTCACTGATTAGTTTGATAACCAGGTANCTTGACCAGT
TATGTCTTATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATAAC
CAGGTAGGTCCATAAAAGTATCGCTTGTTACCCTTTAAACGCCTAAGTAC
CCTTATCGGATAGAATCATTTTAAGGTTATTGAAAAATTTAATCTTCAAG
ATCATGGCTCCTTGCCCCCTCCGCCGAGGGGCTCATAATTGTAATCAATA
TTGTACATTTTTTACTACCCATCTCTAATTTTATAGATATACGAGAGCTT
GGTGATTTATCACTAGTCTCAGCTTCAGTTGACAGTCAAGGGGAAACTCA
CTCAGTGATATGTCTTGTTAACAAGCAATACATTGCACAAATCATGATAT
CCAAAACAAATGAACCTTTTGTACAAGAGATGATGCAGGTTTGTAAGGAG
GATGTCCTTGGTTCGAATGATGTGACCCATGCAAAGAGAGTTGAAGATAT
CATTTTCTGTATATCTGAGCAGTTGGTCCTCTGTATCTTTTCGTTTGAAT
TTTTTTGCAATGAAATAAATTATATCCTTTTTAACACAAAATAAGGTTTA
GCATAAATAGTCATAATTGTGATAGATATTTTGGATAGAGCAAGACAATA
ATGAAAAGATTTGTTTAAGTTTGTCTAAATTTCAAAAATGAAAGCAGTGA
ATGATTATATATTTGAGAGCTTATTATTCTTAACTTTAACTAAATTTCAA
TTTACTTAAGATGCTATTGCTGCACAAACTCTTGAAGTTGTTTTACAGAT
GAATCTGCAAGGTAAAATTTAATGACATGATTTGAACAATTATAATCATT
ATTGTAATAAAGGTAATTTTGAACTGTAGCACGATTTTTGAGTTTTTTTT
GCACAGCAAACTGGCTCCAAGTTAAAATATTTTTGATTTGTTTCCCTCGA
TTTATTTTGCTTGAATTTGAATGATAATTTTTTGATGCAGTAAAACCGTT
ATAGTTTTCATTATTGTCATTTGATTTTCCAGATAAACTTCTTTTGTATG
ATGTGCAACACTTAGATGCCACCTTTGACTCAACTCAATTCAAACTGGTA
TTAATCGATGAGTCCTTGCAGATCCATTCCATCCATATTCACAAAAGTTT
GTTACTAGGCAACTCACCAGATTCTTCCAACAAAAAGTGGCCAAATATAT
GGAGCTATAGGGTTGGACATATGAGTGACAGCAAAAAGATTGGAAAGAGA
AGGCGAAAAATGAAACATTCCTCTATTGAAGTTTCAACTACACCAGCTGA
AGAATCGATGAGAGATCTTACGTGCGATAACTTGGTTGCTTCCAACACAT
CTATAATGATGCNACACAAAATAAGGTTTAGCATAAATAGTCATAATTGT
GATAGATATTTTGGATAGAGCAAGACAATAATGAAAAGATTTGTTTAAGT
TTGTCAAAATTTCAAAAATGAAAGCAGTGAATGATTATTATATTTGAGAG
CTTATTATTCTTAACTTTAACTAAATTTCAATTTACTTAAGATGCTATTG
CTGCACAAACTCATGAAGTTGTTTTACAGATGAATCTGCAAGGTAAAATT
TAATGACATGATTTGAACAATTATAATCATTATTGTAATAAAGGTAATTT
TGAACTGTAGCACGATTTTTGAGTTTTTTTTGCACAGCAAACTGGCTCCA
AGTTAAAATATTTTTGATTTGTTTCCCTCGATTTATTTTGCTTGAATTTG
AATGATAATTTTTTGATGCAGTAAAACCGTTATAGTTTTCATTATTGTCA
TTTGATTTTCCAGATAAACTTCTTTTGTATGATGTGCAACACTTAGATGC
CACCTTTGACTCAACTCAATTCAAACTGGTATTAATCGATGAGTCCTTGC
AGATCCATTCCATCCATATTCACAAAAGTTTGTTACTAGGCAACTCACCA
GATTCTTCCAACAAAAAGTGGCCAAATATATGGAGCTATAGGGTTGGACA
TATGAGTGACAGCAAAAAGATTGGAAAGAGAAGGCGAAAAATGAAACATA
CTTCTATTGAAGTTTCAACTACACCAGCTGAAGAATCGATGAGAGATCTT
ACGTGCGATAACTTGGTTGCTTCCAACACATCTATAATGATGATACTAAA
ACCTAAAAACAGACATGAATTAGAGCAGGAAAACAAACAATGCCTCGTTT
ACTTTAATACTATGGATAATACTTTCAATTCACTTGATCTGGACACCGAA
ACATGTTTATGTTACAGCAATAATCCACATTTCCCAACTTTGTTGATTTC
CATCCACTCAATAACAATACCAACCTTTAATGCAAACCAAGAACAACTAA
TTGATACTGTAAGATTTGAAAAAAAAAATTTTCTAAAGAAGGTGCACCCA
GTATGAATTAACCTTTGTCTGTCCGTCTTTTTGTCTCTTACCATGATTTT
TTCGGTCTTTGTTGATCAGATTATTTTTTCTGATTTTTTGAAAAGATGTA
AAATGTCAAAACCCAATTGATAGGGAGTAAAATCCTTGGAAGATTTGTAG
AGTATTTCGTGGTAGGCAACCGCACGTGATTGGTTTGAAAGTAGATAAGA
TTTTGTGAAAGAAGGCTTTTGAATTAGGCGTTCCAAAATGGCTGTATTCT
AAATTCTTATTAATTCTAATTTTGTTTGAAGTGTTTTATTTTTATATTAA
TTTCTTCGTTCGTTTTTCAGATTATTCAGTATAGTGGTATTGACCAAGCA
GAGGTGATTTGTAAAACCAACAATTGGGACCAATTCAGCATCCCATTGCA
TACTTTGGAAGTTGGGTTACAACACAGACAGTTCGAAACCGTTGCCTTCT
TTTTGAAAAGTCGAGAGAAAGGTATGAGAAAAGATGATTTTGTCTGTACA
TTTGATAGACAGCTACTTGTTTCAAATATAAAAGAACCTTCTAGAGGGTG
GCGTTTATTTGAGAAAAGTTTATTGCATTATTACATTTGTAATAAAAATC
GAACGTCATAACCTCTTTCTGAATGACCATTATTCTGCTATGTTCTTTCC
CTGCTTTCCTTTATTTTCAGTATTCACTCGATATTGGAGGAGTGTCGGTG
AACTATCATCATCCTTCAACGCTGGTGGTGGTGGAAGTCCTTCAAAATCC
TTTACTTCACAAAGGTCGTACACTGAAAATATTAATTCTGATGAAATGGT
ATCTGCTATTGAAATGTTGATGAAATCGTTAAAATCCTGCTCAACTGGTT
CGTTTATATACATTCCAGAACTTAAGAACAAATTGAGAACAATCTAAACC
TCAGATTTGAAATTTAGTAATTAAAAAGATGCGTTTTTGAGTTACTTTCA
TGCCTTTAGATAAACCAAACTATTCATTAAGAATAGACTTTTTCATAAAA
TGTGTCACGAGCACTTATTTTCAAAATATTACCATGGTATTTGATTCAAA
GAGGAGTTCGCTCTATTTAAAAAATATCACTTGAAGACTCAAGGGATATA
ATCAATTTGGTAATGCTTTCAAAACGAGGCAGTTGCTGCACTCAAAATAA
ATTATGAAAAGGCCTAAAGATTCTAAGCTTGTAAGCTTGGAATTAAGAAC
ATCCAAACCTCAGTCAAATTTAATGGTGGCTCTTATGTTTCTAAAAAACC
GCTTACCTGGGGATGAGGTCATAAAAGTGGCCTCAAAGTTGAACCAGCCA
ATTTGTTTTGCTTGCAAGTTTGATAATTACTTCTCATTTTCAAGGAGAGT
TCTTCGTTACTGATTTGAATATATTATATAATTTTTTTGATGATGGTACT
CTGTTGAGGTCGAAACGTTTAAAATAAGAATAAATTTCAAAATTAACCAA
GAAGCAGATTCTGTACCATTAAATCTTTTACTCAAGATGTATGAAAGGAT
TGATTTACTTGATAATTTTTTTTTTCACTTTAATTTCAGGAAAACACAAA
CAGAATTTTTTTGAATCACTTTTAAAGCTTTGTTTATCATACTTTAACGA
TCTCATACAAGATGGAATTTTTGCATTGGAAATGGAATCTTACCATTCCA
AAGAAGATCTACCCATATTGAGGTCGAACAGTACCACAAGTGATCCTGGA
GAATATGGGTTCAATTTTCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040736XLOC_040736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064973-exon-scaffold_427-1575043694:340373..340662TCONS_00064973-exon-scaffold_427-1575043694:340373..340662Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1575043694:336035..336219TCONS_00064973-exon-scaffold_427-1575043694:336035..336219Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1575043694:334581..334826TCONS_00064973-exon-scaffold_427-1575043694:334581..334826Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1575043694:334302..334352TCONS_00064973-exon-scaffold_427-1575043694:334302..334352Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1575043694:332755..333299TCONS_00064973-exon-scaffold_427-1575043694:332755..333299Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1575043694:332242..332392TCONS_00064973-exon-scaffold_427-1575043694:332242..332392Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1575043694:331866..332042TCONS_00064973-exon-scaffold_427-1575043694:331866..332042Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1575043694:330992..331173TCONS_00064973-exon-scaffold_427-1575043694:330992..331173Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1510915933:340373..340662TCONS_00064973-exon-scaffold_427-1510915933:340373..340662Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1510915933:336035..336219TCONS_00064973-exon-scaffold_427-1510915933:336035..336219Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1510915933:334581..334826TCONS_00064973-exon-scaffold_427-1510915933:334581..334826Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1510915933:334302..334352TCONS_00064973-exon-scaffold_427-1510915933:334302..334352Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1510915933:332755..333299TCONS_00064973-exon-scaffold_427-1510915933:332755..333299Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1510915933:332242..332392TCONS_00064973-exon-scaffold_427-1510915933:332242..332392Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1510915933:331866..332042TCONS_00064973-exon-scaffold_427-1510915933:331866..332042Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1510915933:330992..331173TCONS_00064973-exon-scaffold_427-1510915933:330992..331173Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1491911889:340373..340662TCONS_00064973-exon-scaffold_427-1491911889:340373..340662Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1491911889:336035..336219TCONS_00064973-exon-scaffold_427-1491911889:336035..336219Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1491911889:334581..334826TCONS_00064973-exon-scaffold_427-1491911889:334581..334826Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1491911889:334302..334352TCONS_00064973-exon-scaffold_427-1491911889:334302..334352Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1491911889:332755..333299TCONS_00064973-exon-scaffold_427-1491911889:332755..333299Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1491911889:332242..332392TCONS_00064973-exon-scaffold_427-1491911889:332242..332392Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1491911889:331866..332042TCONS_00064973-exon-scaffold_427-1491911889:331866..332042Clytia hemisphaericaexon
TCONS_00064973-exon-scaffold_427-1491911889:330992..331173TCONS_00064973-exon-scaffold_427-1491911889:330992..331173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:330992..340662 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337084	0.177864	0	0	0.000697635	0.00172979	0.780494	0.377877	0.909991	0.45485	0	0.525637	0.843754	0	0.743153	0.662181	0.361347	0.33721	0.21736	1.0005	0.520785	0.533847	0	0.473702	0.619242	1.78494	0	0	0.552288	0.541667
Blast
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BLAST of TCONS_00064973 vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.256e-16
Identity = 55/214 (25.70%), Postives = 101/214 (47.20%), Query Frame = 1 
Query: 1171 MDNTFNSLDLDTETCLCYS-NNPHFPT---------LLISIHSITIPTFNANQEQLIDTIIQYSGIDQAEVICKTNNWDQFSIPLHTLEVGLQHRQFETVAFFLKSREKVFTRYWRSVGELSSSFNAGGGGSPSKSFTSQRSYTENINSDEMVSAIEMLMKSLKSCSTGKHKQNFFESLLKLCLSYFNDLIQDGIFALEMESYHSKEDLPILRS 1782
            M  T    DL+T+   C+S      P           +++ + +++  F   QE+ ++ ++ +      + +C  N W + SIP+H LE G+++RQ +TV FFLKS+E +              FN     S S  F    S+    N +E++ A+++L  +++   +    ++F E LL L LS+ N+ I++     E    H ++ + IL S
Sbjct:  446 MGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENRQLDTVNFFLKSKENL--------------FNPSSKSSVSDQFDHLSSHLYLRNVEELIPALDLLCSAIRESYSEPQSKHFSEQLLNLTLSFLNNQIKELFIHTEELDEHLQKGVNILTS 645
The following BLAST results are available for this feature:
BLAST of TCONS_00064973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTCS2.256e-1625.70Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3[more]
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