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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064990 ID=TCONS_00064990|Name=TCONS_00064990|organism=Clytia hemisphaerica|type=transcript|length=454bp
CTCAAGTCTTTAAGACTCCAACCCAAGGAGACGTCTATGGGAAGTGGGCA
ATCCAGCTCCCAACTTTTGATCGATACTGTCGCCCCTCTCTCCGCCATAG
GATCTcGAAAGAGGCGGACAGCTGCAGTCATGCTCGAGAACAATTCGTGG
AAGAAATCGCGAAAGTAATTGGACTTCGCTCTATACTTTGTATATAACTT
ATCGTATATtgacaatttcaatattttatccaTAAAGCAAGCAATTTGTT
TGAGTCTCTTTTATACCTAAAAAACTCCAAAACCGGGGTATCATTTGCAT
TCACTAATATCTGGGGATTTCTTTTCGATTCACCCTtcattatctttcca
acaagcaCAGAACCGCAATCTGATCAATCtaaattctaaaatcaaaaatt
cgaATAAACGATGGGGtgttagaaaattttcaaaatttaataaacggggg
aggg Run BLAST on NCBI transcript from alignment at scaffold_428:47379..49400+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064990 ID=TCONS_00064990|Name=TCONS_00064990|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at scaffold_428:47379..49400+ (Clytia hemisphaerica)
CTCAAGTCTTTAAGACTCCAACCCAAGGTAATTCTGGTCCCTGCAATATC
ATAGAATAATTTAgcgatggaaaaacagcttctcgAAAAACAATGAGAAT
ACGGCTCGTCACATGTCAGGTTCTTTacccttaagggagtttgttttggt
taatgaatttcttttgtttttgattaaaaaatctgcataattagcgtgat
GTGACGAAATTATTTTGTACTGATTATGcctttactctcgggtacctaat
aaggaCCTTAAGCAACTAGGACGGCGACTTGAGGGAGAACGtggagaaaa
tattaaaatctaatggtaaattttattcgATTTTACTATGGTTTAATAGC
ACGTGAATGGACTTTAACAAAAGCAAACTTtggtgaaaaataatttttta
tcccCCGAGTGATTTAAATGATTAATTACTATTGTACTCTTTTATTACCG
CCTTCGTCTTAGAGAGCACGTCGAAACATGTTTTTGAAGTCGCCTTGTAA
TTTTGAAACGTCCAGTAACTGCCCAATTAAATCTAAGTATTTTCATGAGA
AAAGTATATGAAAAGAATGAAATCTTTTTGTGATTCAAATGTTGATCCCA
AAAGGGATTTGTTATTGTTGGATGCTACAGTTCTCACTACAACCGCCGTC
CTAGTTGCTTAGGGtccctaatagccggggggggcgctaattaatttttc
aaaaaatttccaccaggacattcttattccaaccccctatccgcttattg
attttttgaaaaaaaatttggaaagttGTTAGCcttcttttcgaaaattt
tctacccaggacatttttattccaaccaaCGAGAAATTGTTTAACAATCA
TCACggtaaaacaaaacaaaacaaaaaataaataaataaaaatttaaccG
AATTTCAAAATCCATATTATATTCAACGTGAATTCTACCTTTCAGGAGAC
GTCTATGGGAAGTGGGCAATCCAGCTCCCAACTTTTGATCGATACTGTCG
CCCCTCTCTCCGCCATAGGATCTGTAAGTGTGTTATAACCGTTCAGTTAA
AAAAGAAATGAGTGTATACCTTATcgaccaaaacttagtcggccttcatt
ttagtcggccttaattattagtcggccctaattttagtcNGAAATGAGTG
TATACCTTATcgaccaaaacttagtcggccttaattttagtcgtagtcgg
cccaaattttagtcggccctaattttagtcaccaagtcaaaatttagtca
cttagggccgactaggGTAGTCATAATTTCCCGGACTTCATGCGTTCCTT
GTGAAGTGTCTGCTGCTTTCCCTTGGAGAAATAGCGGGGTCCCCGAGATT
CATTTTACTGACCCAATCCCGAGGAGGtggtatattttcaaaatattttg
atcaagTTTCATAGGCCTTGAGAGTTGAATAAATGGAAAAAGTTTGTTCA
TTTTCATTGGTTGCTGAAATGAAATTTACTAACTCCTTTGCATTGATTTT
CTCTAGAAAAAGTCATTTGACCTCCCACTTTACGCCCTCTCACCTCCCAC
TGAACGCCCTCTCTCCCTTTTTTCTAATCTTCTATTGATATTGtgatttt
cagataattttcttTGGTGTCACTATCTTTCGTAAGCTTTGATAATTCAT
GAgacatttttttgtctttttagcGAAAGAGGCGGACAGCTGCAGTCATG
CTCGAGAACAATTCGTGGAAGAAATCGCGAAAGTAATTGGACTTCGCTCT
ATACTTTGTATATAACTTATCGTATATtgacaatttcaatattttatcca
TAAAGCAAGCAATTTGTTTGAGTCTCTTTTATACCTAAAAAACTCCAAAA
CCGGGGTATCATTTGCATTCACTAATATCTGGGGATTTCTTTTCGATTCA
CCCTtcattatctttccaacaagcaCAGAACCGCAATCTGATCAATCtaa
attctaaaatcaaaaattcgaATAAACGATGGGGtgttagaaaattttca
aaatttaataaacgggggaggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064990-exon-scaffold_428-1491911889:47379..47405 | TCONS_00064990-exon-scaffold_428-1491911889:47379..47405 | Clytia hemisphaerica | exon |
| TCONS_00064990-exon-scaffold_428-1510915933:47379..47405 | TCONS_00064990-exon-scaffold_428-1510915933:47379..47405 | Clytia hemisphaerica | exon |
| TCONS_00064990-exon-scaffold_428-1575043694:47379..47405 | TCONS_00064990-exon-scaffold_428-1575043694:47379..47405 | Clytia hemisphaerica | exon |
| TCONS_00064990-exon-scaffold_428-1491911889:48324..48401 | TCONS_00064990-exon-scaffold_428-1491911889:48324..48401 | Clytia hemisphaerica | exon |
| TCONS_00064990-exon-scaffold_428-1510915933:48324..48401 | TCONS_00064990-exon-scaffold_428-1510915933:48324..48401 | Clytia hemisphaerica | exon |
| TCONS_00064990-exon-scaffold_428-1575043694:48324..48401 | TCONS_00064990-exon-scaffold_428-1575043694:48324..48401 | Clytia hemisphaerica | exon |
| TCONS_00064990-exon-scaffold_428-1491911889:49052..49400 | TCONS_00064990-exon-scaffold_428-1491911889:49052..49400 | Clytia hemisphaerica | exon |
| TCONS_00064990-exon-scaffold_428-1510915933:49052..49400 | TCONS_00064990-exon-scaffold_428-1510915933:49052..49400 | Clytia hemisphaerica | exon |
| TCONS_00064990-exon-scaffold_428-1575043694:49052..49400 | TCONS_00064990-exon-scaffold_428-1575043694:49052..49400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_428 | supercontig | scaffold_428:47379..49400 + |
Blast
The following BLAST results are available for this feature:
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