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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064992 ID=TCONS_00064992|Name=TCONS_00064992|organism=Clytia hemisphaerica|type=transcript|length=3011bpRun BLAST on NCBI protein sequence of TCONS_00064992-protein >TCONS_00064992-protein ID=TCONS_00064992-protein|Name=TCONS_00064992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp MITRRARRRVNSQQEEDQVEEAATLNVITIEDSPNEESESNNMTDTEADVRun BLAST on NCBI transcript from alignment at scaffold_428:133887..159118+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064992 ID=TCONS_00064992|Name=TCONS_00064992|organism=Clytia hemisphaerica|type=transcript|length=25232bp|location=Sequence derived from alignment at scaffold_428:133887..159118+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_428:133887..159118+ >TCONS_00064992 ID=TCONS_00064992|Name=TCONS_00064992|organism=Clytia hemisphaerica|type=CDS|length=19044bp|location=Sequence derived from alignment at scaffold_428:133887..159118+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064992 vs. Swiss-Prot (Human)
Match: RFWD3 (E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens GN=RFWD3 PE=1 SV=3) HSP 1 Score: 256.914 bits (655), Expect = 2.323e-72 Identity = 161/426 (37.79%), Postives = 235/426 (55.16%), Query Frame = 1
Query: 352 SMDEEQ--SCPICFEMWTSAGAHRLVSLPCGHLFGRSCIERWLKEPKNKCCPQCKSTAKRKDIRNIFAKSLKALDTSEKEQVKKALLEEQYKRSKAEENEAKAVLQCQLMQAEMEKLRKQISEQANQTKSSVASSSRGDVAGPSGSGVQSTFMARNHLFSPMKATQQHSXXXXXXXXXXXXXLSDYGKSYKFQRTLQVSQK-DARVLAYDGTHMTMVVTKPSPNQLF-KGFGVLKVSSLEQRSSEYISIHSNTIRDAKFNSTGDRLLLTASVDKTLKLTSVLSNSMVQSYTCPNPVWACAWDESNCNYVYAGLQNGQCYVYDIRQSSV---ELSVIRPRLGVPRPIVSLAYVPPGNENSVLRCQGVLVGTLQGGWFIQNVNNENFIDHQLILPEGSCSGLYFDKTNRSCLLSQRPGKSNHRIIQSV 1608
SMDEE+ +C IC E WT+AG HRL +L CGHLFG CI WLK KC PQC A+ DI ++A++L+ALDTSE+E++K +LL+EQ R +AE A+ LQ Q++ + +L++++ Q + S ++ P GS Q+ ++ SP Q + Y FQ+T VSQ + R++AY +V+++PSP F GFGV +S+ +SS+YI +H IR F+S LLL+AS+D T+KLTS+ +N++VQ+Y PVW+C W NY+YAGL NG VYD+R +S EL + R P+VSL+Y+P ++ GVL GTL+ F + + + H L L G C + ++R CL++ RP K NH I+SV
Sbjct: 278 SMDEEEGDTCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQVRKC-PQCNKKARHSDIVVLYARTLRALDTSEQERMKSSLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRV-----QDLQKLTSHQSQNLQQPRGS--QAWVLS----CSPSSQGQ-------------------HKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVKMLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGRPVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARC----PLVSLSYMPRA-ASAAFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDK-NHTTIRSV 666 The following BLAST results are available for this feature:
BLAST of TCONS_00064992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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