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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064996 ID=TCONS_00064996|Name=TCONS_00064996|organism=Clytia hemisphaerica|type=transcript|length=1673bpRun BLAST on NCBI protein sequence of TCONS_00064996-protein >TCONS_00064996-protein ID=TCONS_00064996-protein|Name=TCONS_00064996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp GEARKVQYKKLFINNEWCDSISGKTFPTINPATGKVICHLQEGDKADVDLRun BLAST on NCBI transcript from alignment at scaffold_428:165268..214004+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064996 ID=TCONS_00064996|Name=TCONS_00064996|organism=Clytia hemisphaerica|type=transcript|length=48737bp|location=Sequence derived from alignment at scaffold_428:165268..214004+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_428:165268..214004+ >TCONS_00064996 ID=TCONS_00064996|Name=TCONS_00064996|organism=Clytia hemisphaerica|type=CDS|length=22095bp|location=Sequence derived from alignment at scaffold_428:165268..214004+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064996 vs. Swiss-Prot (Human)
Match: ALDH2 (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2) HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0 Identity = 279/479 (58.25%), Postives = 354/479 (73.90%), Query Frame = 2
Query: 29 KLFINNEWCDSISGKTFPTINPATGKVICHLQEGXXXXXXXXXXXXXXXFEFGSEWRSIAAAQRGALIEKLVELVQRDQEPIAELITTDMGKTITWSRK-ETALSVAILAYYAGYCDKICGKTLPPSLASEDAFFAYTKQEPIGVCGAITTYNFPLLMMVMKIGPALACGCTMVMKAGEQSPLVGLHMAALIKEAGFPPGVFNLVNGYGPTAGAAISEHMDINKVAFTGSVEIGKIVMQAAAKSNLKRVFLELGGKSPLIVFPDVDVDWAVLQAHEAIMENHGQNCCAGSRTFVHEDIYDQFVEKATACAAARVVGDPFNDITQQGPLINDTQHEKVLGLIQTGIKEGASLKYGGERVGNEGYFVQPTVFADVTDEMTIAKQEIFGPVQSILKFKDIDEVIARANATAYGLGSGVLTKDIDKAMKVVNGIEAGTVWVNCYNYTHPQCPFGGFKQSGHGRELGKYALKEYTEVKQVTMKL 1462
++FINNEW D++S KTFPT+NP+TG+VIC + EGDK DVD AVKAA+ AF+ GS WR + A+ RG L+ +L +L++RD+ +A L T D GK S + + + L YYAG+ DK GKT+P + FF+YT+ EP+GVCG I +NFPLLM K+GPALA G +VMK EQ+PL L++A LIKEAGFPPGV N+V G+GPTAGAAI+ H D++KVAFTGS EIG+++ AA SNLKRV LELGGKSP I+ D D+DWAV QAH A+ N GQ CCAGSRTFV EDIYD+FVE++ A A +RVVG+PF+ T+QGP +++TQ +K+LG I TG +EGA L GG + GYF+QPTVF DV D MTIAK+EIFGPV ILKFK I+EV+ RAN + YGL + V TKD+DKA + ++AGTVWVNCY+ Q PFGG+K SG GRELG+Y L+ YTEVK VT+K+
Sbjct: 38 QIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIP----IDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKV 512 The following BLAST results are available for this feature:
BLAST of TCONS_00064996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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